Wall clock time and date at job start Mon Mar 30 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09004 * 109.46878 * 55.00074 * 3 2 1 5 5 C 1.50690 * 109.47298 * 174.99961 * 3 2 1 6 6 H 1.07998 * 120.00299 * 120.00126 * 5 3 2 7 7 C 1.37880 * 120.00343 * 300.00234 * 5 3 2 8 8 N 1.31521 * 119.99619 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00508 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46929 * 90.00020 * 9 7 5 11 11 H 1.48502 * 109.46973 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47154 * 330.00071 * 9 7 5 13 13 O 1.42901 * 109.47193 * 295.00228 * 3 2 1 14 14 C 1.35000 * 116.99876 * 89.99828 * 13 3 2 15 15 O 1.21705 * 120.00259 * 0.02562 * 14 13 3 16 16 C 1.41297 * 119.99392 * 180.02562 * 14 13 3 17 17 C 1.35754 * 119.99833 * 186.46955 * 16 14 13 18 18 C 1.41534 * 119.99775 * 10.01104 * 17 16 14 19 19 C 1.38003 * 126.10898 * 218.66525 * 18 17 16 20 20 C 1.40279 * 106.52718 * 180.02562 * 19 18 17 21 21 C 1.35178 * 107.20884 * 0.02562 * 20 19 18 22 22 C 1.50705 * 125.47927 * 180.02562 * 21 20 19 23 23 O 1.34003 * 109.04380 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.46873 * 59.99505 * 1 2 3 25 25 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46980 * 300.00064 * 1 2 3 27 27 H 1.08999 * 109.47376 * 240.00249 * 2 1 3 28 28 H 1.09001 * 109.47203 * 120.00061 * 2 1 3 29 29 H 0.97003 * 119.99967 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.00500 * 6.46632 * 16 14 13 31 31 H 1.07997 * 120.00275 * 190.01210 * 17 16 14 32 32 H 1.08007 * 126.73213 * 0.04454 * 19 18 17 33 33 H 1.07997 * 126.39495 * 179.97438 * 20 19 18 34 34 H 1.08990 * 109.47389 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46608 * 299.98800 * 22 21 20 36 36 H 1.08996 * 109.46896 * 59.98066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8800 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3110 2.1546 12 1 6.6132 0.8395 0.0270 13 8 1.6620 2.0815 -1.2210 14 6 0.4720 2.7189 -1.2363 15 8 -0.2246 2.7312 -0.2384 16 6 0.0354 3.3716 -2.4109 17 6 -1.0957 4.1220 -2.3899 18 6 -1.7203 4.4261 -1.1568 19 6 -3.0796 4.4702 -0.9228 20 6 -3.2411 4.8098 0.4287 21 6 -2.0045 4.9570 0.9545 22 6 -1.6999 5.3214 2.3848 23 8 -1.0930 4.7257 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 0.6014 3.2736 -3.3255 31 1 -1.5189 4.4870 -3.3141 32 1 -3.8650 4.2801 -1.6395 33 1 -4.1783 4.9319 0.9512 34 1 -0.6202 5.3691 2.5255 35 1 -2.1396 6.2921 2.6139 36 1 -2.1198 4.5664 3.0493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588558030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:41 Heat of formation + Delta-G solvation = -57.377748 kcal Electronic energy + Delta-G solvation = -20318.340052 eV Core-core repulsion = 17156.052582 eV Total energy + Delta-G solvation = -3162.287471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20045 -39.63165 -36.19636 -33.85315 -33.40344 -32.87146 -31.35041 -30.89755 -27.57696 -26.53750 -23.83564 -22.72758 -21.52358 -20.68400 -19.78343 -18.96003 -17.50799 -16.64517 -16.03288 -15.77909 -15.17465 -14.95500 -14.49313 -13.99907 -13.62844 -12.99850 -12.94004 -12.80915 -12.72508 -12.58425 -12.12716 -12.05824 -11.64615 -11.41453 -11.23772 -11.14260 -10.91261 -10.61626 -10.24053 -9.90604 -9.74185 -9.58192 -9.48328 -9.25012 -8.69143 -8.38960 -7.63660 -6.13764 -4.20347 0.72733 2.31034 2.86807 3.26583 3.32023 3.32101 3.36388 3.77934 3.98256 4.40362 4.87841 5.06849 5.17626 5.19108 5.33610 5.53059 5.58202 5.66962 5.86894 5.90999 5.99653 6.21110 6.26704 6.29838 6.36195 6.48923 6.57305 6.77818 6.94455 7.03902 7.24215 7.33343 7.48604 7.67359 7.81187 8.02948 8.23220 8.72345 8.99061 9.45004 10.93042 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.005603 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.095620 B = 4995.921460 C = 5331.648145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.219 3.781 4 H 0.045 0.955 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.472 3.528 15 O -0.496 6.496 16 C -0.170 4.170 17 C -0.009 4.009 18 C 0.006 3.994 19 C -0.179 4.179 20 C -0.229 4.229 21 C 0.015 3.985 22 C -0.077 4.077 23 O -0.129 6.129 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.106 0.894 29 H 0.265 0.735 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 8.115 -5.270 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.062 0.938 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.318 3.682 15 O -0.388 6.388 16 C -0.189 4.189 17 C -0.027 4.027 18 C -0.044 4.044 19 C -0.199 4.199 20 C -0.248 4.248 21 C -0.038 4.038 22 C -0.134 4.134 23 O -0.023 6.023 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.867 7.992 -4.731 14.295 hybrid contribution 0.696 -0.292 0.144 0.769 sum -10.171 7.700 -4.586 13.556 Atomic orbital electron populations 1.21835 0.98420 0.98755 1.00698 1.22032 0.92551 0.99655 1.03148 1.20194 0.94900 0.88777 0.79599 0.93766 1.21066 0.89810 1.38687 1.06117 0.91477 1.24884 0.99104 0.94839 0.95131 1.69903 1.35271 1.38008 1.09455 0.86314 0.84113 0.77636 0.78317 1.20460 1.20981 1.19616 1.86201 1.33885 1.62780 1.43514 1.19793 0.81549 0.78456 0.88384 1.90868 1.54525 1.58168 1.35233 1.21805 0.97996 0.99933 0.99139 1.20626 0.93432 0.94684 0.94006 1.19515 0.90824 1.07764 0.86330 1.22054 0.94607 1.06008 0.97189 1.21284 0.97553 1.10625 0.95379 1.22593 0.87446 1.02108 0.91606 1.20330 1.04075 1.01896 0.87072 1.84264 1.35889 1.65284 1.16821 0.94990 0.95047 0.92939 0.94164 0.87564 0.92514 0.83774 0.82540 0.83603 0.83872 0.90342 0.90051 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.55 37.16 0.32 -2.88 16 2 C -0.14 -3.49 5.48 -26.73 -0.15 -3.63 16 3 C 0.22 5.98 2.22 -27.89 -0.06 5.92 16 4 H 0.04 1.34 7.11 -51.93 -0.37 0.97 16 5 C -0.52 -14.86 8.89 -34.44 -0.31 -15.17 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.51 11.29 55.43 0.63 -24.89 16 9 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 O -0.35 -8.58 9.68 -41.32 -0.40 -8.98 16 14 C 0.47 10.24 5.88 31.89 0.19 10.43 16 15 O -0.50 -11.67 9.57 -27.69 -0.27 -11.93 16 16 C -0.17 -2.73 9.99 -39.31 -0.39 -3.12 16 17 C -0.01 -0.12 9.95 -39.22 -0.39 -0.51 16 18 C 0.01 0.10 5.34 -38.41 -0.21 -0.11 16 19 C -0.18 -2.56 10.90 -38.90 -0.42 -2.98 16 20 C -0.23 -3.27 10.76 -39.90 -0.43 -3.70 16 21 C 0.02 0.25 7.30 -35.39 -0.26 -0.01 16 22 C -0.08 -0.97 10.41 36.01 0.37 -0.59 16 23 O -0.13 -2.43 7.80 -20.12 -0.16 -2.59 16 24 H 0.03 0.71 6.05 -51.93 -0.31 0.39 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 1.26 7.75 -51.93 -0.40 0.86 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -32.79 306.09 -7.18 -39.97 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.75 Total: 2.19 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.83 Total: -14.72 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.82 Total: -23.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.79 -7.18 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.406 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds