Wall clock time and date at job start Mon Mar 30 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09004 * 109.46878 * 55.00074 * 3 2 1 5 5 C 1.50690 * 109.47298 * 174.99961 * 3 2 1 6 6 H 1.07998 * 120.00299 * 120.00126 * 5 3 2 7 7 C 1.37880 * 120.00343 * 300.00234 * 5 3 2 8 8 N 1.31521 * 119.99619 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00508 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46929 * 90.00020 * 9 7 5 11 11 H 1.48502 * 109.46973 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47154 * 330.00071 * 9 7 5 13 13 O 1.42901 * 109.47193 * 295.00228 * 3 2 1 14 14 C 1.35000 * 116.99876 * 89.99828 * 13 3 2 15 15 O 1.21705 * 120.00259 * 0.02562 * 14 13 3 16 16 C 1.41297 * 119.99392 * 180.02562 * 14 13 3 17 17 C 1.35754 * 119.99833 * 186.46955 * 16 14 13 18 18 C 1.41534 * 119.99775 * 10.01104 * 17 16 14 19 19 C 1.38003 * 126.10898 * 218.66525 * 18 17 16 20 20 C 1.40279 * 106.52718 * 180.02562 * 19 18 17 21 21 C 1.35178 * 107.20884 * 0.02562 * 20 19 18 22 22 C 1.50705 * 125.47927 * 180.02562 * 21 20 19 23 23 O 1.34003 * 109.04380 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.46873 * 59.99505 * 1 2 3 25 25 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46980 * 300.00064 * 1 2 3 27 27 H 1.08999 * 109.47376 * 240.00249 * 2 1 3 28 28 H 1.09001 * 109.47203 * 120.00061 * 2 1 3 29 29 H 0.97003 * 119.99967 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.00500 * 6.46632 * 16 14 13 31 31 H 1.07997 * 120.00275 * 190.01210 * 17 16 14 32 32 H 1.08007 * 126.73213 * 0.04454 * 19 18 17 33 33 H 1.07997 * 126.39495 * 179.97438 * 20 19 18 34 34 H 1.08990 * 109.47389 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46608 * 299.98800 * 22 21 20 36 36 H 1.08996 * 109.46896 * 59.98066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8800 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3110 2.1546 12 1 6.6132 0.8395 0.0270 13 8 1.6620 2.0815 -1.2210 14 6 0.4720 2.7189 -1.2363 15 8 -0.2246 2.7312 -0.2384 16 6 0.0354 3.3716 -2.4109 17 6 -1.0957 4.1220 -2.3899 18 6 -1.7203 4.4261 -1.1568 19 6 -3.0796 4.4702 -0.9228 20 6 -3.2411 4.8098 0.4287 21 6 -2.0045 4.9570 0.9545 22 6 -1.6999 5.3214 2.3848 23 8 -1.0930 4.7257 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 0.6014 3.2736 -3.3255 31 1 -1.5189 4.4870 -3.3141 32 1 -3.8650 4.2801 -1.6395 33 1 -4.1783 4.9319 0.9512 34 1 -0.6202 5.3691 2.5255 35 1 -2.1396 6.2921 2.6139 36 1 -2.1198 4.5664 3.0493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588558030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:41 Heat of formation + Delta-G solvation = -75.926615 kcal Electronic energy + Delta-G solvation = -20319.144392 eV Core-core repulsion = 17156.052582 eV Total energy + Delta-G solvation = -3163.091810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.39706 -41.35639 -37.95548 -35.45471 -35.15915 -34.04659 -33.35221 -32.07055 -29.49140 -27.92649 -25.54541 -24.42878 -22.68625 -22.23957 -21.47967 -20.42062 -19.06470 -18.63209 -17.69294 -17.14372 -16.86533 -16.66530 -16.03919 -15.25130 -15.11547 -14.71278 -14.47144 -14.04693 -13.84645 -13.81292 -13.70478 -13.47037 -13.33564 -13.13473 -13.03005 -12.81727 -12.72855 -12.57299 -12.14132 -11.77379 -11.43021 -11.22482 -11.07782 -10.76777 -10.63424 -10.48162 -8.81707 -8.27730 -6.44711 -0.49706 1.09939 1.39363 1.41461 1.53294 1.71366 2.14397 2.24537 2.39062 2.56672 3.01468 3.79557 3.97289 4.11594 4.19336 4.34991 4.37724 4.42180 4.53827 4.55715 4.64915 4.79125 4.81446 4.83594 4.85570 5.04450 5.09097 5.15739 5.21624 5.33735 5.44348 5.51928 5.67602 5.72115 6.00734 6.19673 6.33081 6.61420 7.09710 7.30072 8.79197 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.005603 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.095620 B = 4995.921460 C = 5331.648145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.000 1.000 5 C -0.551 4.551 6 H 0.062 0.938 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.273 1.273 12 H -0.263 1.263 13 O -0.362 6.362 14 C 0.462 3.538 15 O -0.524 6.524 16 C -0.210 4.210 17 C 0.036 3.964 18 C -0.040 4.040 19 C -0.164 4.164 20 C -0.231 4.231 21 C -0.012 4.012 22 C -0.077 4.077 23 O -0.169 6.169 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.270 0.730 30 H 0.175 0.825 31 H 0.217 0.783 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 8.697 -6.600 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.080 0.920 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.198 1.198 11 H -0.198 1.198 12 H -0.187 1.187 13 O -0.280 6.280 14 C 0.311 3.689 15 O -0.417 6.417 16 C -0.229 4.229 17 C 0.018 3.982 18 C -0.089 4.089 19 C -0.183 4.183 20 C -0.250 4.250 21 C -0.065 4.065 22 C -0.133 4.133 23 O -0.065 6.065 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.192 0.808 31 H 0.233 0.767 32 H 0.200 0.800 33 H 0.191 0.809 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.051 8.581 -6.076 15.994 hybrid contribution 0.859 -0.362 0.626 1.123 sum -11.192 8.219 -5.451 14.917 Atomic orbital electron populations 1.21648 0.96331 1.00226 0.99831 1.21870 0.94361 0.98442 1.02035 1.19822 0.94355 0.89192 0.79414 0.98262 1.21362 0.90710 1.39882 1.06865 0.91955 1.25821 1.04306 0.93836 0.94323 1.70029 1.37421 1.38012 1.09830 0.85222 0.77664 0.78062 0.78699 1.19788 1.19822 1.18747 1.86179 1.36095 1.63725 1.41954 1.20799 0.80169 0.77955 0.89979 1.90851 1.54916 1.59238 1.36726 1.21851 1.00402 1.02772 0.97858 1.21402 0.90976 0.90720 0.95112 1.20285 0.92158 1.09719 0.86734 1.22574 0.94493 1.03412 0.97788 1.21737 0.97961 1.09536 0.95727 1.23353 0.88147 1.02512 0.92466 1.20468 1.03056 1.03960 0.85847 1.84240 1.37713 1.66287 1.18234 0.94578 0.92215 0.94990 0.93821 0.89825 0.92093 0.80796 0.76678 0.79967 0.80918 0.92390 0.86689 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.55 71.98 0.62 -5.12 16 2 C -0.13 -6.85 5.48 30.60 0.17 -6.68 16 3 C 0.23 13.00 2.22 29.85 0.07 13.07 16 4 H 0.00 -0.02 7.11 -2.38 -0.02 -0.04 16 5 C -0.55 -32.71 8.89 25.60 0.23 -32.48 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -54.03 11.29 21.45 0.24 -53.79 16 9 Si 0.98 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 13 O -0.36 -18.66 9.68 -59.19 -0.57 -19.23 16 14 C 0.46 20.66 5.88 68.57 0.40 21.06 16 15 O -0.52 -25.72 9.57 27.07 0.26 -25.46 16 16 C -0.21 -6.56 9.99 22.45 0.22 -6.33 16 17 C 0.04 0.88 9.95 22.51 0.22 1.10 16 18 C -0.04 -1.24 5.34 23.03 0.12 -1.12 16 19 C -0.16 -4.20 10.90 22.71 0.25 -3.95 16 20 C -0.23 -6.11 10.76 22.06 0.24 -5.87 16 21 C -0.01 -0.40 7.30 24.98 0.18 -0.22 16 22 C -0.08 -1.95 10.41 71.24 0.74 -1.20 16 23 O -0.17 -6.52 7.80 17.65 0.14 -6.38 16 24 H 0.04 1.62 6.05 -2.39 -0.01 1.61 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.03 1.58 7.75 -2.39 -0.02 1.56 16 27 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 4.82 5.95 -2.39 -0.01 4.80 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.17 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.22 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.88 306.09 7.07 -68.81 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.07 Total: 16.20 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.91 Total: -26.35 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.24 Total: -53.79 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.18 Total: -51.07 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.88 7.07 -68.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.120 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds