Wall clock time and date at job start Mon Mar 30 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.52265 * 2 1 4 4 C 1.38771 * 119.35245 * 179.75531 * 3 2 1 5 5 C 1.38796 * 118.44908 * 0.51247 * 4 3 2 6 6 O 1.35978 * 120.50071 * 179.73278 * 5 4 3 7 7 C 1.39476 * 119.00564 * 359.75351 * 5 4 3 8 8 N 1.39573 * 119.72403 * 180.02562 * 7 5 4 9 9 C 1.34787 * 119.99442 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99560 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46551 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46844 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46921 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00011 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00254 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47129 * 90.00138 * 18 16 14 20 20 H 1.48498 * 109.47388 * 209.99890 * 18 16 14 21 21 H 1.48503 * 109.47298 * 330.00249 * 18 16 14 22 22 N 1.31956 * 119.52065 * 180.27620 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72223 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71821 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72451 * 1 2 3 26 26 H 1.07999 * 120.31802 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.77434 * 180.24913 * 4 3 2 28 28 H 0.96696 * 113.99997 * 270.02636 * 6 5 4 29 29 H 0.96996 * 120.00443 * 359.97438 * 8 7 5 30 30 H 1.08998 * 109.46716 * 299.99604 * 11 9 8 31 31 H 1.08997 * 109.47295 * 59.99631 * 11 9 8 32 32 H 1.08998 * 109.47364 * 299.99301 * 12 11 9 33 33 H 1.09005 * 109.47393 * 60.00149 * 12 11 9 34 34 H 1.08998 * 109.47024 * 300.00066 * 13 12 11 35 35 H 1.09005 * 109.46549 * 60.00189 * 13 12 11 36 36 H 0.97004 * 120.00284 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2016 0.0000 4 6 3.5752 1.1975 0.0052 5 6 4.2328 -0.0248 -0.0007 6 8 5.5916 -0.0775 -0.0015 7 6 3.4790 -1.1983 -0.0063 8 7 4.1248 -2.4356 -0.0118 9 6 3.4017 -3.5731 -0.0167 10 8 2.1901 -3.5214 -0.0159 11 6 4.0990 -4.9091 -0.0219 12 6 3.0561 -6.0285 -0.0262 13 6 3.7640 -7.3850 -0.0322 14 6 2.7368 -8.4876 -0.0358 15 1 1.6844 -8.2452 -0.0344 16 6 3.1405 -9.8060 -0.0409 17 7 2.2442 -10.7682 -0.0445 18 14 4.9609 -10.2252 -0.0440 19 1 5.4445 -10.3414 1.3553 20 1 5.1705 -11.5154 -0.7488 21 1 5.7148 -9.1523 -0.7409 22 7 2.1573 -1.1482 -0.0055 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6449 2.1354 0.0004 27 1 4.1306 2.1238 0.0093 28 1 5.9843 -0.0882 -0.8850 29 1 5.0939 -2.4770 -0.0120 30 1 4.7229 -4.9898 -0.9121 31 1 4.7224 -4.9971 0.8678 32 1 2.4326 -5.9477 0.8642 33 1 2.4324 -5.9407 -0.9159 34 1 4.3872 -7.4656 -0.9228 35 1 4.3880 -7.4731 0.8572 36 1 2.5282 -11.6957 -0.0485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594347927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:10 Heat of formation + Delta-G solvation = -47.015714 kcal Electronic energy + Delta-G solvation = -19027.918316 eV Core-core repulsion = 15898.372928 eV Total energy + Delta-G solvation = -3129.545388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12606 -39.21050 -37.65136 -35.06771 -34.25915 -32.22852 -32.12199 -31.36114 -28.55122 -27.02422 -24.54789 -23.10138 -22.40872 -20.59242 -19.88188 -18.86677 -17.62297 -17.23805 -16.58121 -16.09139 -15.90688 -15.47613 -14.69442 -14.36964 -14.24133 -13.71061 -13.57529 -13.56186 -12.78516 -12.64946 -12.49810 -12.35617 -12.01461 -11.65633 -11.59704 -11.00201 -10.80393 -10.72983 -10.19666 -9.92538 -9.78844 -9.70702 -9.66471 -9.17136 -8.97469 -8.50311 -8.26113 -5.99829 -3.97664 0.75245 1.03650 2.77875 2.80271 3.32303 3.39351 3.41992 3.49807 3.79368 4.14052 4.47804 4.48168 4.72699 4.87739 5.07763 5.19004 5.33367 5.39025 5.48950 5.50627 5.55013 5.70064 5.79749 5.83440 6.06230 6.13324 6.45348 6.54849 6.67312 6.91540 7.12927 7.20031 7.37638 7.45455 7.82926 7.91697 8.34500 8.60023 9.07054 9.62064 11.13888 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.003585 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.808286 B = 7808.541270 C = 8589.759970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.155 3.845 3 C -0.198 4.198 4 C -0.070 4.070 5 C 0.001 3.999 6 O -0.488 6.488 7 C 0.356 3.644 8 N -0.664 5.664 9 C 0.500 3.500 10 O -0.464 6.464 11 C -0.139 4.139 12 C -0.088 4.088 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 N -0.462 5.462 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.385 0.615 29 H 0.418 0.582 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 26.723 -1.555 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.017 3.983 3 C -0.219 4.219 4 C -0.096 4.096 5 C -0.049 4.049 6 O -0.296 6.296 7 C 0.122 3.878 8 N -0.311 5.311 9 C 0.286 3.714 10 O -0.331 6.331 11 C -0.179 4.179 12 C -0.126 4.126 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 N -0.179 5.179 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.240 0.760 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.480 25.636 -0.950 26.042 hybrid contribution 2.173 0.451 -0.458 2.266 sum 6.653 26.088 -1.408 26.959 Atomic orbital electron populations 1.20739 0.88352 1.03688 1.03390 1.21282 0.97288 0.87272 0.92494 1.21795 0.93938 0.99396 1.06802 1.21639 0.94604 0.97284 0.96079 1.18787 0.83709 0.91632 1.10754 1.84919 1.15184 1.96049 1.33410 1.18998 0.89008 0.85569 0.94182 1.43972 1.10998 1.03367 1.72793 1.21541 0.88522 0.85460 0.75828 1.90799 1.13463 1.86451 1.42382 1.21913 1.00951 0.91020 1.03987 1.21293 0.96109 0.92484 1.02718 1.19605 0.96596 0.92796 0.96145 1.21159 0.94463 0.89607 1.50474 0.90904 1.25053 0.97467 0.96430 0.94699 1.69919 1.33445 0.99672 1.51313 0.86760 0.86185 0.77764 0.78416 1.20341 1.21450 1.19049 1.67606 1.06145 1.28869 1.15295 0.90133 0.90634 0.89890 0.84485 0.84065 0.75992 0.74440 0.89090 0.89039 0.91935 0.91929 0.96621 0.97044 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.62 16 2 C 0.16 1.86 6.78 -82.59 -0.56 1.30 16 3 C -0.20 -1.80 9.72 -39.44 -0.38 -2.18 16 4 C -0.07 -0.62 10.12 -39.18 -0.40 -1.02 16 5 C 0.00 0.01 6.76 -38.91 -0.26 -0.25 16 6 O -0.49 -3.96 12.77 -19.67 -0.25 -4.21 16 7 C 0.36 4.84 7.45 -154.44 -1.15 3.69 16 8 N -0.66 -8.51 5.39 -11.29 -0.06 -8.57 16 9 C 0.50 8.12 7.79 -10.98 -0.09 8.04 16 10 O -0.46 -9.48 14.24 5.56 0.08 -9.40 16 11 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16 12 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 15 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.49 13.96 55.43 0.77 -27.72 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 N -0.46 -7.15 7.79 -8.45 -0.07 -7.21 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 28 H 0.39 1.34 9.06 45.56 0.41 1.76 16 29 H 0.42 3.86 8.04 -40.82 -0.33 3.53 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -37.15 311.58 -6.86 -44.01 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.07 Total: 0.75 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.29 Total: -9.48 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.65 Total: -43.51 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.17 Total: -13.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.15 -6.86 -44.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594347927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.009 kcal (2) G-P(sol) polarization free energy of solvation -37.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds