Wall clock time and date at job start Mon Mar 30 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.52265 * 2 1 4 4 C 1.38771 * 119.35245 * 179.75531 * 3 2 1 5 5 C 1.38796 * 118.44908 * 0.51247 * 4 3 2 6 6 O 1.35978 * 120.50071 * 179.73278 * 5 4 3 7 7 C 1.39476 * 119.00564 * 359.75351 * 5 4 3 8 8 N 1.39573 * 119.72403 * 180.02562 * 7 5 4 9 9 C 1.34787 * 119.99442 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99560 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46551 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46844 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46921 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00011 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00254 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47129 * 90.00138 * 18 16 14 20 20 H 1.48498 * 109.47388 * 209.99890 * 18 16 14 21 21 H 1.48503 * 109.47298 * 330.00249 * 18 16 14 22 22 N 1.31956 * 119.52065 * 180.27620 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72223 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71821 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72451 * 1 2 3 26 26 H 1.07999 * 120.31802 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.77434 * 180.24913 * 4 3 2 28 28 H 0.96696 * 113.99997 * 270.02636 * 6 5 4 29 29 H 0.96996 * 120.00443 * 359.97438 * 8 7 5 30 30 H 1.08998 * 109.46716 * 299.99604 * 11 9 8 31 31 H 1.08997 * 109.47295 * 59.99631 * 11 9 8 32 32 H 1.08998 * 109.47364 * 299.99301 * 12 11 9 33 33 H 1.09005 * 109.47393 * 60.00149 * 12 11 9 34 34 H 1.08998 * 109.47024 * 300.00066 * 13 12 11 35 35 H 1.09005 * 109.46549 * 60.00189 * 13 12 11 36 36 H 0.97004 * 120.00284 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2016 0.0000 4 6 3.5752 1.1975 0.0052 5 6 4.2328 -0.0248 -0.0007 6 8 5.5916 -0.0775 -0.0015 7 6 3.4790 -1.1983 -0.0063 8 7 4.1248 -2.4356 -0.0118 9 6 3.4017 -3.5731 -0.0167 10 8 2.1901 -3.5214 -0.0159 11 6 4.0990 -4.9091 -0.0219 12 6 3.0561 -6.0285 -0.0262 13 6 3.7640 -7.3850 -0.0322 14 6 2.7368 -8.4876 -0.0358 15 1 1.6844 -8.2452 -0.0344 16 6 3.1405 -9.8060 -0.0409 17 7 2.2442 -10.7682 -0.0445 18 14 4.9609 -10.2252 -0.0440 19 1 5.4445 -10.3414 1.3553 20 1 5.1705 -11.5154 -0.7488 21 1 5.7148 -9.1523 -0.7409 22 7 2.1573 -1.1482 -0.0055 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6449 2.1354 0.0004 27 1 4.1306 2.1238 0.0093 28 1 5.9843 -0.0882 -0.8850 29 1 5.0939 -2.4770 -0.0120 30 1 4.7229 -4.9898 -0.9121 31 1 4.7224 -4.9971 0.8678 32 1 2.4326 -5.9477 0.8642 33 1 2.4324 -5.9407 -0.9159 34 1 4.3872 -7.4656 -0.9228 35 1 4.3880 -7.4731 0.8572 36 1 2.5282 -11.6957 -0.0485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594347927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:10 Heat of formation + Delta-G solvation = -75.633409 kcal Electronic energy + Delta-G solvation = -19029.159273 eV Core-core repulsion = 15898.372928 eV Total energy + Delta-G solvation = -3130.786344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02129 -40.33590 -38.34541 -36.34592 -35.86641 -34.16314 -32.91919 -32.37506 -30.23006 -27.92127 -26.01266 -24.31305 -23.28373 -22.12452 -21.27998 -19.62811 -18.95126 -18.40508 -18.22940 -17.05531 -16.95111 -16.49165 -16.24830 -15.59529 -15.29361 -14.96628 -14.87202 -14.71090 -14.31812 -13.84306 -13.56659 -13.44257 -13.13472 -13.10514 -12.73412 -12.49782 -12.28378 -11.79168 -11.73488 -11.69465 -11.50301 -11.34707 -11.21203 -10.75125 -10.60752 -9.99850 -9.11428 -8.27737 -6.33603 -0.05207 0.26713 1.38785 1.42468 1.54534 1.65606 1.82468 2.39337 2.71395 3.04935 3.07376 3.29978 3.78320 3.83335 4.03414 4.13610 4.22439 4.32734 4.47509 4.71488 4.74453 4.77540 4.88977 4.92938 4.99423 5.02465 5.05756 5.13449 5.29387 5.54237 5.59017 5.67496 5.69635 6.20380 6.30944 6.68747 6.75156 6.98105 7.30562 7.32985 8.90094 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.003585 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.808286 B = 7808.541270 C = 8589.759970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.179 4.179 4 C -0.070 4.070 5 C 0.018 3.982 6 O -0.489 6.489 7 C 0.315 3.685 8 N -0.649 5.649 9 C 0.501 3.499 10 O -0.521 6.521 11 C -0.126 4.126 12 C -0.081 4.081 13 C -0.008 4.008 14 C -0.541 4.541 15 H 0.018 0.982 16 C -0.004 4.004 17 N -0.958 5.958 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.234 1.234 22 N -0.512 5.512 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.054 0.946 26 H 0.174 0.826 27 H 0.178 0.822 28 H 0.409 0.591 29 H 0.435 0.565 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 29.535 -1.691 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.096 4.096 5 C -0.033 4.033 6 O -0.300 6.300 7 C 0.083 3.917 8 N -0.298 5.298 9 C 0.289 3.711 10 O -0.393 6.393 11 C -0.165 4.165 12 C -0.119 4.119 13 C -0.046 4.046 14 C -0.579 4.579 15 H 0.036 0.964 16 C -0.200 4.200 17 N -0.599 5.599 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.157 1.157 22 N -0.230 5.230 23 H 0.101 0.899 24 H 0.127 0.873 25 H 0.073 0.927 26 H 0.191 0.809 27 H 0.195 0.805 28 H 0.267 0.733 29 H 0.275 0.725 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.356 28.513 -1.101 29.733 hybrid contribution 0.883 -0.314 -0.421 1.027 sum 9.239 28.200 -1.523 29.714 Atomic orbital electron populations 1.20780 0.87575 1.03913 1.03603 1.21713 0.98219 0.87699 0.93899 1.22171 0.94385 0.99550 1.03834 1.22076 0.94669 0.97937 0.94869 1.18796 0.84522 0.91051 1.08903 1.84859 1.13750 1.95902 1.35470 1.19296 0.89166 0.86429 0.96802 1.43622 1.11565 1.02602 1.72033 1.21612 0.87903 0.86613 0.75019 1.90787 1.15777 1.87295 1.45409 1.21751 0.99367 0.88450 1.06963 1.21052 0.96961 0.93584 1.00319 1.19540 0.95493 0.92056 0.97473 1.21561 0.93518 0.92061 1.50771 0.96361 1.26218 1.04032 0.95919 0.93821 1.70107 1.36699 1.00362 1.52685 0.85478 0.78396 0.78253 0.79380 1.18945 1.21210 1.15679 1.67465 1.07741 1.31271 1.16526 0.89898 0.87295 0.92727 0.80866 0.80475 0.73254 0.72456 0.85817 0.86100 0.94622 0.94444 0.94862 0.95152 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.17 71.24 0.72 -1.22 16 2 C 0.12 2.89 6.78 42.51 0.29 3.17 16 3 C -0.18 -2.73 9.72 22.36 0.22 -2.52 16 4 C -0.07 -0.98 10.12 22.53 0.23 -0.75 16 5 C 0.02 0.32 6.76 22.70 0.15 0.48 16 6 O -0.49 -6.15 12.77 -93.30 -1.19 -7.34 16 7 C 0.32 8.36 7.45 132.99 0.99 9.35 16 8 N -0.65 -15.96 5.39 -308.02 -1.66 -17.62 16 9 C 0.50 16.32 7.79 87.66 0.68 17.01 16 10 O -0.52 -22.54 14.24 -3.01 -0.04 -22.58 16 11 C -0.13 -3.67 5.70 29.85 0.17 -3.50 16 12 C -0.08 -3.44 4.44 30.60 0.14 -3.30 16 13 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 14 C -0.54 -32.94 9.66 25.60 0.25 -32.69 16 15 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 16 C 0.00 -0.25 5.47 84.66 0.46 0.22 16 17 N -0.96 -62.47 13.96 21.45 0.30 -62.17 16 18 Si 0.96 44.16 27.47 68.60 1.88 46.04 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 22 N -0.51 -16.24 7.79 -180.66 -1.41 -17.65 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.41 1.22 9.06 -74.06 -0.67 0.55 16 29 H 0.43 6.97 8.04 -92.71 -0.75 6.22 16 30 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 34 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 35 H 0.03 1.32 7.57 -2.38 -0.02 1.30 16 36 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -87.71 311.58 1.94 -85.77 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -0.36 Total: 9.58 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.42 Total: -14.02 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.77 Total: -97.45 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.23 Total: -29.92 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -87.71 1.94 -85.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594347927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.140 kcal (2) G-P(sol) polarization free energy of solvation -87.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds