Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38618 * 120.45033 * 2 1 4 4 C 1.38581 * 118.39852 * 179.72658 * 3 2 1 5 5 C 1.50698 * 120.44466 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47325 * 90.00050 * 5 4 3 7 7 C 1.81396 * 103.00004 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47111 * 175.09994 * 7 6 5 9 9 C 1.50703 * 115.54582 * 65.25395 * 8 7 6 10 10 H 1.08006 * 119.99834 * 268.60955 * 9 8 7 11 11 C 1.37870 * 120.00381 * 88.61671 * 9 8 7 12 12 N 1.31511 * 120.00374 * 174.71730 * 11 9 8 13 13 Si 1.86805 * 119.99806 * 354.71980 * 11 9 8 14 14 H 1.48494 * 109.47257 * 92.47814 * 13 11 9 15 15 H 1.48504 * 109.47105 * 212.47965 * 13 11 9 16 16 H 1.48502 * 109.46864 * 332.47668 * 13 11 9 17 17 C 1.53000 * 117.50206 * 279.58358 * 8 7 6 18 18 C 1.53001 * 117.49985 * 210.92045 * 8 7 6 19 19 N 1.32352 * 119.10483 * 359.97438 * 4 3 2 20 20 C 1.31776 * 120.81922 * 0.02562 * 19 4 3 21 21 N 1.31809 * 121.75547 * 359.97438 * 20 19 4 22 22 H 1.08994 * 109.46813 * 89.99455 * 1 2 3 23 23 H 1.08996 * 109.47478 * 209.99915 * 1 2 3 24 24 H 1.09003 * 109.46245 * 329.99922 * 1 2 3 25 25 H 1.07992 * 120.80044 * 359.70798 * 3 2 1 26 26 H 1.09002 * 109.46922 * 209.99620 * 5 4 3 27 27 H 1.08997 * 109.47500 * 329.99603 * 5 4 3 28 28 H 1.09001 * 109.47283 * 295.10299 * 7 6 5 29 29 H 1.09000 * 109.46915 * 55.10825 * 7 6 5 30 30 H 0.96999 * 120.00526 * 179.97438 * 12 11 9 31 31 H 1.08994 * 117.49554 * 359.97438 * 17 8 7 32 32 H 1.08994 * 117.49756 * 145.01657 * 17 8 7 33 33 H 1.09007 * 117.49864 * 214.97804 * 18 8 7 34 34 H 1.08995 * 117.49649 * 359.97438 * 18 8 7 35 35 H 1.08007 * 119.12097 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 0.0058 5 6 4.4041 2.4164 0.0067 6 16 4.7219 2.9298 1.7172 7 6 5.6917 4.4492 1.5137 8 6 5.9415 5.0821 2.8841 9 6 6.8011 4.2774 3.8247 10 1 6.3437 3.5814 4.5124 11 6 8.1713 4.4297 3.8075 12 7 8.9134 3.8067 4.6966 13 14 8.9736 5.5210 2.5211 14 1 9.1296 6.8941 3.0645 15 1 10.3084 4.9730 2.1699 16 1 8.1206 5.5634 1.3062 17 6 4.8112 5.9124 3.4955 18 6 6.0607 6.6062 2.9472 19 7 4.1964 -0.0333 0.0117 20 6 3.4956 -1.1493 0.0115 21 7 2.1775 -1.1407 0.0060 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 1.6901 2.1418 -0.0047 26 1 5.3520 2.2436 -0.5029 27 1 3.8508 3.2000 -0.5110 28 1 6.6461 4.2109 1.0441 29 1 5.1421 5.1495 0.8849 30 1 9.8774 3.9135 4.6843 31 1 3.8897 6.0080 2.9213 32 1 4.6895 5.8769 4.5780 33 1 6.7605 7.0268 3.6694 34 1 5.9616 7.1578 2.0124 35 1 4.0151 -2.0962 0.0168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596361763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = 66.679892 kcal Electronic energy + Delta-G solvation = -16838.127614 eV Core-core repulsion = 14156.265308 eV Total energy + Delta-G solvation = -2681.862306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.07550 -37.00145 -34.85526 -33.34721 -32.08072 -29.49681 -28.22852 -27.56688 -25.37539 -24.17407 -21.82068 -21.65306 -19.11113 -17.66123 -16.76008 -16.21670 -15.67267 -15.51730 -15.00541 -14.89915 -13.93651 -13.78430 -13.66905 -13.36751 -13.10969 -12.98991 -12.78508 -12.52195 -12.39401 -11.92241 -11.12707 -10.90665 -10.82717 -10.56265 -10.35346 -10.16794 -9.71482 -9.69745 -9.29370 -9.27566 -9.07397 -8.58574 -8.41013 -7.00123 -6.09550 -4.12127 0.76792 0.92545 2.22667 3.17346 3.26970 3.36873 3.39162 3.78270 3.95676 3.96839 4.26305 4.41145 4.89265 4.90518 4.93994 5.07950 5.16393 5.22938 5.27825 5.44397 5.58296 5.61677 5.67692 5.73161 5.88095 6.01669 6.09215 6.33044 6.34869 6.43540 6.68710 6.99155 7.00185 7.09103 7.70837 8.07258 8.50108 8.95964 9.52932 11.02568 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.004675 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.015028 B = 5987.662749 C = 6378.426577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.173 3.827 3 C -0.214 4.214 4 C 0.207 3.793 5 C -0.071 4.071 6 S -0.193 6.193 7 C -0.046 4.046 8 C 0.013 3.987 9 C -0.481 4.481 10 H 0.081 0.919 11 C 0.080 3.920 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.261 1.261 17 C -0.173 4.173 18 C -0.192 4.192 19 N -0.511 5.511 20 C 0.301 3.699 21 N -0.528 5.528 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.265 0.735 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 -2.982 -11.894 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.238 4.238 4 C 0.061 3.939 5 C -0.219 4.219 6 S 0.036 5.964 7 C -0.194 4.194 8 C 0.010 3.990 9 C -0.518 4.518 10 H 0.099 0.901 11 C -0.123 4.123 12 N -0.531 5.531 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.220 1.220 16 H -0.186 1.186 17 C -0.210 4.210 18 C -0.232 4.232 19 N -0.226 5.226 20 C 0.013 3.987 21 N -0.244 5.244 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.165 0.835 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.602 -4.392 -10.903 17.977 hybrid contribution 0.739 1.981 -1.787 2.769 sum -12.863 -2.410 -12.690 18.229 Atomic orbital electron populations 1.20772 0.87852 1.04165 1.03475 1.21705 0.97579 0.88149 0.89912 1.22563 0.95378 1.00754 1.05063 1.20868 0.90909 0.92876 0.89263 1.22320 1.02728 0.94915 1.01933 1.87396 1.70570 1.34605 1.03847 1.23391 1.00205 0.94316 1.01532 1.19013 0.98891 0.89090 0.91968 1.20192 0.90145 1.23157 1.18334 0.90143 1.24948 0.97100 0.95217 0.94994 1.69891 1.05615 1.43208 1.34416 0.86892 0.78561 0.80821 0.83213 1.20438 1.21962 1.18551 1.22838 0.91516 1.06350 1.00321 1.23042 1.01864 0.96722 1.01575 1.68228 1.41962 0.98568 1.13851 1.24956 0.86587 0.96803 0.90373 1.68244 1.10504 1.30390 1.15288 0.89849 0.89930 0.90009 0.83465 0.88149 0.88798 0.90255 0.92482 0.92553 0.90704 0.89320 0.89092 0.90965 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.22 36.01 0.37 -0.44 16 2 C 0.17 2.02 6.82 -82.24 -0.56 1.46 16 3 C -0.21 -2.61 9.54 -39.31 -0.38 -2.98 16 4 C 0.21 3.04 6.08 -82.24 -0.50 2.54 16 5 C -0.07 -1.04 6.27 36.00 0.23 -0.82 16 6 S -0.19 -3.71 21.41 -107.50 -2.30 -6.01 16 7 C -0.05 -0.92 5.42 37.16 0.20 -0.72 16 8 C 0.01 0.29 0.79 -155.66 -0.12 0.16 16 9 C -0.48 -13.27 9.07 -34.44 -0.31 -13.58 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 12 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 13 Si 0.88 21.27 24.95 -169.99 -4.24 17.03 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.26 -5.89 5.69 56.52 0.32 -5.57 16 17 C -0.17 -3.45 9.96 -26.69 -0.27 -3.71 16 18 C -0.19 -3.95 7.67 -26.69 -0.20 -4.16 16 19 N -0.51 -7.95 10.38 -10.80 -0.11 -8.06 16 20 C 0.30 4.01 12.29 -92.16 -1.13 2.88 16 21 N -0.53 -6.94 10.38 -10.79 -0.11 -7.06 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 27 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 28 H 0.08 1.68 6.54 -51.92 -0.34 1.34 16 29 H 0.06 0.98 8.09 -51.92 -0.42 0.56 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 33 H 0.09 1.97 7.33 -51.92 -0.38 1.59 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -31.89 310.07 -9.10 -40.99 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.00 Total: 2.04 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.78 Total: -17.21 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.55 Total: -41.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.24 Total: 17.03 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.30 Total: -6.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.89 -9.10 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596361763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.672 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds