Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38618 * 120.45033 * 2 1 4 4 C 1.38581 * 118.39852 * 179.72658 * 3 2 1 5 5 C 1.50698 * 120.44466 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47325 * 90.00050 * 5 4 3 7 7 C 1.81396 * 103.00004 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47111 * 175.09994 * 7 6 5 9 9 C 1.50703 * 115.54582 * 65.25395 * 8 7 6 10 10 H 1.08006 * 119.99834 * 268.60955 * 9 8 7 11 11 C 1.37870 * 120.00381 * 88.61671 * 9 8 7 12 12 N 1.31511 * 120.00374 * 174.71730 * 11 9 8 13 13 Si 1.86805 * 119.99806 * 354.71980 * 11 9 8 14 14 H 1.48494 * 109.47257 * 92.47814 * 13 11 9 15 15 H 1.48504 * 109.47105 * 212.47965 * 13 11 9 16 16 H 1.48502 * 109.46864 * 332.47668 * 13 11 9 17 17 C 1.53000 * 117.50206 * 279.58358 * 8 7 6 18 18 C 1.53001 * 117.49985 * 210.92045 * 8 7 6 19 19 N 1.32352 * 119.10483 * 359.97438 * 4 3 2 20 20 C 1.31776 * 120.81922 * 0.02562 * 19 4 3 21 21 N 1.31809 * 121.75547 * 359.97438 * 20 19 4 22 22 H 1.08994 * 109.46813 * 89.99455 * 1 2 3 23 23 H 1.08996 * 109.47478 * 209.99915 * 1 2 3 24 24 H 1.09003 * 109.46245 * 329.99922 * 1 2 3 25 25 H 1.07992 * 120.80044 * 359.70798 * 3 2 1 26 26 H 1.09002 * 109.46922 * 209.99620 * 5 4 3 27 27 H 1.08997 * 109.47500 * 329.99603 * 5 4 3 28 28 H 1.09001 * 109.47283 * 295.10299 * 7 6 5 29 29 H 1.09000 * 109.46915 * 55.10825 * 7 6 5 30 30 H 0.96999 * 120.00526 * 179.97438 * 12 11 9 31 31 H 1.08994 * 117.49554 * 359.97438 * 17 8 7 32 32 H 1.08994 * 117.49756 * 145.01657 * 17 8 7 33 33 H 1.09007 * 117.49864 * 214.97804 * 18 8 7 34 34 H 1.08995 * 117.49649 * 359.97438 * 18 8 7 35 35 H 1.08007 * 119.12097 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 0.0058 5 6 4.4041 2.4164 0.0067 6 16 4.7219 2.9298 1.7172 7 6 5.6917 4.4492 1.5137 8 6 5.9415 5.0821 2.8841 9 6 6.8011 4.2774 3.8247 10 1 6.3437 3.5814 4.5124 11 6 8.1713 4.4297 3.8075 12 7 8.9134 3.8067 4.6966 13 14 8.9736 5.5210 2.5211 14 1 9.1296 6.8941 3.0645 15 1 10.3084 4.9730 2.1699 16 1 8.1206 5.5634 1.3062 17 6 4.8112 5.9124 3.4955 18 6 6.0607 6.6062 2.9472 19 7 4.1964 -0.0333 0.0117 20 6 3.4956 -1.1493 0.0115 21 7 2.1775 -1.1407 0.0060 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 1.6901 2.1418 -0.0047 26 1 5.3520 2.2436 -0.5029 27 1 3.8508 3.2000 -0.5110 28 1 6.6461 4.2109 1.0441 29 1 5.1421 5.1495 0.8849 30 1 9.8774 3.9135 4.6843 31 1 3.8897 6.0080 2.9213 32 1 4.6895 5.8769 4.5780 33 1 6.7605 7.0268 3.6694 34 1 5.9616 7.1578 2.0124 35 1 4.0151 -2.0962 0.0168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596361763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = 47.539930 kcal Electronic energy + Delta-G solvation = -16838.957585 eV Core-core repulsion = 14156.265308 eV Total energy + Delta-G solvation = -2682.692277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04366 -38.70650 -35.81942 -34.29174 -34.22032 -30.48260 -29.68391 -28.56875 -27.42060 -25.14702 -23.27926 -22.78332 -20.93645 -18.70014 -18.44187 -17.50911 -16.93830 -16.83755 -16.41979 -16.08279 -15.51375 -15.02618 -14.96392 -14.71524 -14.63591 -14.11914 -13.91460 -13.72165 -13.45257 -13.10745 -12.97134 -12.62627 -12.14543 -11.94623 -11.85302 -11.67046 -11.51057 -10.96941 -10.83266 -10.66939 -10.38008 -10.31018 -10.10743 -8.48803 -8.26602 -6.33605 -0.30132 -0.01555 0.95366 1.36091 1.38297 1.49632 1.80751 2.38369 2.79402 2.96202 3.07519 3.12745 3.28126 3.35157 3.91846 4.01409 4.06703 4.13634 4.28153 4.40910 4.44882 4.45948 4.52129 4.62609 4.73203 4.75580 4.87885 4.88024 5.08658 5.09413 5.34231 5.46471 5.49985 5.70885 6.03492 6.31974 6.74095 7.09060 7.35153 8.89815 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.029811 B = 0.004675 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.015028 B = 5987.662749 C = 6378.426577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.167 3.833 3 C -0.209 4.209 4 C 0.181 3.819 5 C -0.048 4.048 6 S -0.257 6.257 7 C -0.033 4.033 8 C -0.018 4.018 9 C -0.477 4.477 10 H 0.023 0.977 11 C 0.018 3.982 12 N -0.953 5.953 13 Si 0.940 3.060 14 H -0.266 1.266 15 H -0.301 1.301 16 H -0.227 1.227 17 C -0.158 4.158 18 C -0.181 4.181 19 N -0.545 5.545 20 C 0.290 3.710 21 N -0.540 5.540 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.176 0.824 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.264 0.736 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 -1.136 -14.739 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.021 3.979 3 C -0.232 4.232 4 C 0.036 3.964 5 C -0.196 4.196 6 S -0.028 6.028 7 C -0.181 4.181 8 C -0.020 4.020 9 C -0.514 4.514 10 H 0.041 0.959 11 C -0.179 4.179 12 N -0.593 5.593 13 Si 0.764 3.236 14 H -0.192 1.192 15 H -0.229 1.229 16 H -0.150 1.150 17 C -0.195 4.195 18 C -0.220 4.220 19 N -0.261 5.261 20 C 0.003 3.997 21 N -0.256 5.256 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.194 0.806 26 H 0.113 0.887 27 H 0.148 0.852 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.848 -2.526 -13.753 21.135 hybrid contribution 1.284 1.267 -0.834 1.987 sum -14.564 -1.259 -14.588 20.652 Atomic orbital electron populations 1.20906 0.84873 1.05148 1.05000 1.22422 0.99489 0.87627 0.88391 1.22866 0.94405 1.02225 1.03710 1.21028 0.92118 0.92545 0.90713 1.22289 1.03180 0.96057 0.98072 1.87597 1.70488 1.35559 1.09173 1.23162 1.00182 0.94889 0.99916 1.18909 1.00308 0.89999 0.92820 1.20308 0.90868 1.22221 1.18042 0.95864 1.25868 0.97775 0.97029 0.97215 1.70068 1.05864 1.46126 1.37202 0.85881 0.77328 0.78891 0.81525 1.19174 1.22862 1.14966 1.22858 0.92508 1.04270 0.99879 1.23103 1.01302 0.94788 1.02805 1.68198 1.43203 0.99542 1.15178 1.25405 0.87043 0.97161 0.90132 1.68339 1.10379 1.31288 1.15586 0.87843 0.89915 0.88058 0.80623 0.88732 0.85190 0.91700 0.88416 0.92713 0.87200 0.90994 0.90768 0.87104 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.22 71.24 0.73 -0.52 16 2 C 0.17 3.53 6.82 42.58 0.29 3.82 16 3 C -0.21 -4.54 9.54 22.44 0.21 -4.33 16 4 C 0.18 5.04 6.08 42.56 0.26 5.30 16 5 C -0.05 -1.31 6.27 71.24 0.45 -0.86 16 6 S -0.26 -9.63 21.41 -56.49 -1.21 -10.84 16 7 C -0.03 -1.25 5.42 71.98 0.39 -0.86 16 8 C -0.02 -0.81 0.79 -52.93 -0.04 -0.85 16 9 C -0.48 -27.16 9.07 25.60 0.23 -26.93 16 10 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 11 C 0.02 1.05 5.47 84.65 0.46 1.51 16 12 N -0.95 -60.71 13.96 21.44 0.30 -60.41 16 13 Si 0.94 43.61 24.95 68.60 1.71 45.32 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 16 H -0.23 -9.21 5.69 99.48 0.57 -8.65 16 17 C -0.16 -5.92 9.96 30.62 0.30 -5.61 16 18 C -0.18 -6.80 7.67 30.62 0.23 -6.57 16 19 N -0.55 -16.79 10.38 -188.08 -1.95 -18.74 16 20 C 0.29 7.62 12.29 180.89 2.22 9.84 16 21 N -0.54 -13.52 10.38 -188.06 -1.95 -15.47 16 22 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 25 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.13 2.56 8.10 -2.39 -0.02 2.54 16 28 H 0.06 2.58 6.54 -2.39 -0.02 2.57 16 29 H 0.10 2.86 8.09 -2.39 -0.02 2.84 16 30 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.07 3.05 7.33 -2.38 -0.02 3.03 16 34 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.22 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -73.72 310.07 3.57 -70.15 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.93 Total: 16.05 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 5.74 Total: -26.06 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -3.60 Total: -94.62 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.71 Total: 45.32 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.21 Total: -10.84 kcal Total: -73.72 3.57 -70.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596361763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.686 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds