Wall clock time and date at job start Mon Mar 30 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47263 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47123 * 29.99826 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99902 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 S 1.76193 * 126.04209 * 269.69486 * 13 12 11 15 15 C 1.70974 * 90.28480 * 179.97438 * 14 13 12 16 16 N 1.29025 * 110.16433 * 0.34552 * 15 14 13 17 17 C 1.31779 * 117.12687 * 359.72884 * 16 15 14 18 18 C 1.50706 * 122.74892 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.50068 * 8.73923 * 18 17 16 20 20 C 1.52997 * 117.49422 * 300.07783 * 18 17 16 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 27 27 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 28 28 H 1.08003 * 124.91797 * 180.02562 * 15 14 13 29 29 H 1.09001 * 115.54641 * 154.41468 * 18 17 16 30 30 H 1.09009 * 117.49687 * 0.02562 * 19 18 17 31 31 H 1.09000 * 117.50209 * 145.02153 * 19 18 17 32 32 H 1.09002 * 117.49962 * 214.97897 * 20 18 17 33 33 H 1.08994 * 117.50172 * 359.97438 * 20 18 17 34 34 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 35 35 H 1.08993 * 113.76177 * 139.00817 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 16 0.3878 -7.3975 -2.7168 15 6 -0.6840 -7.2866 -4.0443 16 7 -0.6296 -6.1062 -4.5625 17 6 0.1931 -5.2418 -4.0033 18 6 0.3563 -3.8299 -4.5045 19 6 -0.6203 -3.3437 -5.5771 20 6 0.8350 -3.6429 -5.9455 21 6 2.1611 -3.7399 -0.0455 22 1 -0.4850 0.8400 -0.0004 23 1 0.4835 -2.5465 0.7729 24 1 -0.3212 -2.8279 -1.5258 25 1 1.3294 -2.4995 -2.2139 26 1 2.3663 -4.2117 -2.7493 27 1 2.6199 -5.6522 -1.7349 28 1 -1.3116 -8.0899 -4.4010 29 1 0.6929 -3.1043 -3.7640 30 1 -1.3813 -4.0450 -5.9200 31 1 -0.9261 -2.2980 -5.5427 32 1 1.4861 -2.7938 -6.1533 33 1 1.0323 -4.5409 -6.5309 34 1 3.1447 -3.5475 -0.4741 35 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:08 Heat of formation + Delta-G solvation = 104.277329 kcal Electronic energy + Delta-G solvation = -17651.967415 eV Core-core repulsion = 14971.735456 eV Total energy + Delta-G solvation = -2680.231958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.06857 -38.57953 -36.25051 -33.05999 -31.75833 -28.40591 -26.13407 -25.10187 -24.32397 -22.68427 -22.15016 -21.96967 -18.75270 -18.39787 -17.63455 -16.78268 -15.88413 -15.14923 -14.69433 -14.42157 -14.20279 -14.08872 -13.91336 -13.69502 -12.49657 -12.20829 -12.01442 -11.89013 -11.33321 -11.24196 -11.07469 -10.99755 -10.66944 -10.58997 -10.35461 -10.18824 -9.81451 -9.46496 -9.45224 -9.07338 -8.94407 -8.51144 -8.31438 -7.96728 -6.08122 -4.13379 0.89672 1.54669 1.93050 2.86763 3.26209 3.33971 3.36459 4.12070 4.37426 4.38365 4.81489 4.88771 5.09982 5.19773 5.22088 5.29708 5.38368 5.45173 5.79398 5.81283 5.97340 6.02979 6.06700 6.25652 6.30037 6.35691 6.38052 6.44810 6.59457 6.72488 7.10599 7.13962 7.68786 7.85298 7.89105 7.98628 8.32032 8.89259 9.52001 11.01115 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.005680 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.456452 B = 4928.124788 C = 5687.929335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.016 3.984 11 N -0.486 5.486 12 C 0.093 3.907 13 C -0.176 4.176 14 S 0.119 5.881 15 C 0.002 3.998 16 N -0.463 5.463 17 C 0.089 3.911 18 C -0.095 4.095 19 C -0.159 4.159 20 C -0.168 4.168 21 C -0.002 4.002 22 H 0.262 0.738 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.194 0.806 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -11.860 -8.460 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.113 4.113 11 N -0.209 5.209 12 C -0.037 4.037 13 C -0.297 4.297 14 S 0.372 5.628 15 C -0.296 4.296 16 N -0.176 5.176 17 C -0.043 4.043 18 C -0.115 4.115 19 C -0.197 4.197 20 C -0.205 4.205 21 C -0.130 4.130 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.211 0.789 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.509 -12.972 -8.025 15.262 hybrid contribution 0.974 2.088 -0.727 2.416 sum 1.484 -10.884 -8.751 14.044 Atomic orbital electron populations 1.69962 1.05970 1.26788 1.49471 1.25005 0.94798 0.99112 0.94638 0.86638 0.79962 0.83526 0.78150 1.20650 1.21142 1.19826 1.21071 0.92759 0.90283 1.51696 0.92416 1.20307 0.93695 0.91001 0.92918 1.24235 1.00170 0.85849 1.01012 1.68634 1.26029 1.17498 1.08778 1.21009 0.92398 0.97095 0.93229 1.25579 1.06180 0.96572 1.01385 1.83849 1.37158 1.10258 1.31564 1.28095 1.04410 0.98542 0.98537 1.65988 1.19772 1.01365 1.30507 1.19207 0.95046 0.95632 0.94383 1.20798 1.06406 0.91566 0.92739 1.22907 0.92961 1.01962 1.01820 1.22941 0.97966 1.03017 0.96620 1.24107 0.95338 0.98005 0.95549 0.92828 0.92276 0.91353 0.92479 0.91879 0.90728 0.78888 0.85121 0.88000 0.88536 0.88473 0.89092 0.92494 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 13.29 55.43 0.74 -24.37 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.77 8.77 -34.44 -0.30 -14.07 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.97 3.60 -90.84 -0.33 0.65 16 10 C 0.02 0.35 6.33 -2.57 -0.02 0.33 16 11 N -0.49 -9.65 6.15 -239.49 -1.47 -11.12 16 12 C 0.09 1.58 4.93 -4.97 -0.02 1.55 16 13 C -0.18 -2.86 6.15 -35.92 -0.22 -3.08 16 14 S 0.12 1.56 23.22 -107.50 -2.50 -0.93 16 15 C 0.00 0.03 12.23 51.58 0.63 0.66 16 16 N -0.46 -7.28 9.83 -11.90 -0.12 -7.40 16 17 C 0.09 1.48 6.36 -84.22 -0.54 0.94 16 18 C -0.09 -1.53 5.53 -91.77 -0.51 -2.03 16 19 C -0.16 -2.30 10.09 -26.69 -0.27 -2.56 16 20 C -0.17 -2.28 10.24 -26.69 -0.27 -2.55 16 21 C 0.00 -0.03 7.50 -2.76 -0.02 -0.05 16 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 25 H 0.06 1.27 5.83 -51.93 -0.30 0.97 16 26 H 0.06 1.07 6.67 -51.93 -0.35 0.73 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.19 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.13 2.31 4.45 -51.93 -0.23 2.08 16 30 H 0.10 1.49 7.73 -51.92 -0.40 1.09 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.11 7.88 -51.92 -0.41 0.70 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -28.74 304.21 -10.36 -39.10 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.61 Total: 2.96 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.96 Total: -18.49 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.85 Total: -42.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.74 -10.36 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.382 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds