Wall clock time and date at job start Mon Mar 30 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00225 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46936 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.67301 * 51.77050 * 14 13 12 16 16 C 1.54886 * 110.75953 * 288.32769 * 14 13 12 17 17 C 1.54258 * 104.19947 * 203.74556 * 16 14 13 18 18 C 1.53873 * 106.59766 * 23.60863 * 17 16 14 19 19 F 1.39898 * 110.03573 * 240.71335 * 18 17 16 20 20 F 1.39907 * 110.03164 * 119.28781 * 18 17 16 21 21 C 1.54268 * 106.59879 * 0.02562 * 18 17 16 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.08997 * 109.47110 * 300.00260 * 13 12 11 30 30 H 1.09001 * 109.46880 * 60.00508 * 13 12 11 31 31 H 1.08998 * 110.48844 * 322.42731 * 16 14 13 32 32 H 1.09005 * 110.48291 * 85.06221 * 16 14 13 33 33 H 1.09005 * 110.03375 * 264.32739 * 17 16 14 34 34 H 1.08997 * 110.07614 * 142.91985 * 17 16 14 35 35 H 1.09008 * 110.48204 * 217.71071 * 21 18 17 36 36 H 1.08997 * 110.48942 * 95.06682 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0004 13 6 1.5805 -7.8247 0.0021 14 6 2.4373 -9.0922 0.0010 15 1 3.1768 -9.0576 0.8010 16 6 3.1201 -9.2922 -1.3748 17 6 3.4042 -10.8070 -1.4397 18 6 2.4056 -11.4828 -0.4838 19 9 3.0942 -12.1638 0.5257 20 9 1.5906 -12.3721 -1.1925 21 6 1.5491 -10.3550 0.1281 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 0.9523 -7.8110 0.8927 30 1 0.9505 -7.8117 -0.8873 31 1 2.4490 -8.9950 -2.1806 32 1 4.0509 -8.7269 -1.4244 33 1 4.4255 -11.0096 -1.1170 34 1 3.2545 -11.1725 -2.4556 35 1 1.3335 -10.5655 1.1758 36 1 0.6243 -10.2299 -0.4350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601059762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:03 Heat of formation + Delta-G solvation = -157.027226 kcal Electronic energy + Delta-G solvation = -17122.446194 eV Core-core repulsion = 13980.194034 eV Total energy + Delta-G solvation = -3142.252160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.93414 -48.02245 -38.77895 -36.35217 -34.04013 -32.04514 -29.62634 -29.41614 -26.33948 -25.19646 -22.20584 -21.96984 -21.34462 -18.66866 -18.52299 -17.76134 -17.39820 -16.72535 -16.46929 -16.23443 -15.66552 -15.35669 -15.21392 -14.71272 -14.57122 -14.41403 -14.35820 -13.87441 -13.70936 -13.42962 -12.87341 -12.80355 -12.74414 -12.60243 -12.47815 -12.23431 -12.05852 -11.72808 -11.68153 -11.62243 -11.34915 -11.07138 -10.80637 -10.56566 -8.60669 -8.21584 -6.32527 0.70757 1.40756 1.41675 1.53077 1.70279 2.40994 2.75957 2.93860 3.11982 3.19274 3.36187 3.86390 3.94492 4.05737 4.11243 4.19069 4.26417 4.32315 4.35600 4.55188 4.61284 4.70167 4.74559 4.83216 4.89722 4.99012 5.02765 5.14299 5.16361 5.26390 5.49115 5.68576 5.82279 6.22315 6.83451 7.36828 8.90197 Molecular weight = 264.11amu Principal moments of inertia in cm(-1) A = 0.068072 B = 0.002691 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.230778 B =10404.357227 C =10538.767512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.069 4.069 12 S -0.288 6.288 13 C -0.070 4.070 14 C -0.069 4.069 15 H 0.091 0.909 16 C -0.113 4.113 17 C -0.159 4.159 18 C 0.273 3.727 19 F -0.210 7.210 20 F -0.210 7.210 21 C -0.147 4.147 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.004 1.004 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -23.167 -1.806 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.217 4.217 12 S -0.059 6.059 13 C -0.219 4.219 14 C -0.089 4.089 15 H 0.109 0.891 16 C -0.151 4.151 17 C -0.197 4.197 18 C 0.237 3.763 19 F -0.191 7.191 20 F -0.191 7.191 21 C -0.187 4.187 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.243 -23.072 -1.799 23.728 hybrid contribution -1.260 0.760 0.124 1.477 sum 3.983 -22.311 -1.675 22.726 Atomic orbital electron populations 1.70082 1.07734 1.27855 1.51585 1.25959 0.95789 1.03312 0.94644 0.85453 0.78671 0.78432 0.78554 1.19697 1.20641 1.18840 1.21679 0.93565 0.92374 1.50718 0.92300 1.18982 0.94198 0.92450 0.95220 1.21163 0.97968 0.91654 1.01209 1.23337 0.98896 0.94833 1.04663 1.86830 1.18945 1.01991 1.98179 1.23392 0.99473 0.92831 1.06160 1.21783 0.96792 0.90816 0.99495 0.89096 1.22428 1.02311 0.93622 0.96698 1.23181 0.99480 0.96565 1.00448 1.22108 0.87432 0.83758 0.82972 1.92998 1.80749 1.82722 1.62653 1.92998 1.74620 1.72199 1.79258 1.23398 0.99323 0.91825 1.04153 0.92684 0.98588 0.98529 0.92608 0.92763 0.90376 0.90204 0.89036 0.88754 0.89662 0.89802 0.88199 0.87693 0.88008 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.08 -3.33 5.16 30.59 0.16 -3.17 16 11 C -0.07 -2.25 5.94 71.98 0.43 -1.83 16 12 S -0.29 -7.71 21.46 -56.49 -1.21 -8.92 16 13 C -0.07 -1.27 5.42 71.98 0.39 -0.88 16 14 C -0.07 -1.03 2.87 -9.50 -0.03 -1.06 16 15 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 16 C -0.11 -1.56 5.98 31.67 0.19 -1.37 16 17 C -0.16 -2.04 6.50 31.32 0.20 -1.83 16 18 C 0.27 4.37 2.57 31.32 0.08 4.45 16 19 F -0.21 -4.12 17.04 44.97 0.77 -3.36 16 20 F -0.21 -3.97 17.04 44.97 0.77 -3.20 16 21 C -0.15 -1.93 5.85 31.68 0.19 -1.75 16 22 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 31 H 0.08 1.12 7.93 -2.39 -0.02 1.10 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.10 1.19 8.02 -2.38 -0.02 1.17 16 34 H 0.10 1.15 8.02 -2.39 -0.02 1.13 16 35 H 0.10 1.23 8.11 -2.38 -0.02 1.21 16 36 H 0.11 1.24 8.02 -2.39 -0.02 1.23 16 Total: -1.00 -63.58 316.94 6.12 -57.46 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.04 Total: 3.97 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 2.45 Total: -36.04 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 1.53 Total: -6.56 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.21 Total: -8.92 kcal Total: -63.58 6.12 -57.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601059762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.565 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds