Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38269 * 119.99053 * 2 1 4 4 C 1.38223 * 120.05793 * 179.74801 * 3 2 1 5 5 C 1.38219 * 120.01899 * 0.54884 * 4 3 2 6 6 C 1.50704 * 120.01172 * 179.72439 * 5 4 3 7 7 H 1.09000 * 109.49288 * 144.69633 * 6 5 4 8 8 C 1.53091 * 109.48023 * 264.72798 * 6 5 4 9 9 C 1.53176 * 109.21206 * 177.62153 * 8 6 5 10 10 C 1.53174 * 109.04061 * 302.98570 * 9 8 6 11 11 C 1.53097 * 109.16185 * 56.97999 * 10 9 8 12 12 H 1.08997 * 109.47580 * 62.37620 * 11 10 9 13 13 C 1.50697 * 109.48105 * 182.41126 * 11 10 9 14 14 H 1.08007 * 120.00074 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00214 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99822 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00451 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46855 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47438 * 119.99581 * 17 15 13 20 20 H 1.48500 * 109.47126 * 240.00215 * 17 15 13 21 21 O 1.42902 * 109.41493 * 302.39739 * 11 10 9 22 22 C 1.38438 * 119.97779 * 359.44837 * 5 4 3 23 23 F 1.35104 * 120.02795 * 180.25310 * 22 5 4 24 24 C 1.38174 * 119.98885 * 180.02562 * 2 1 3 25 25 H 1.08992 * 109.46943 * 269.97672 * 1 2 3 26 26 H 1.08994 * 109.46840 * 29.98066 * 1 2 3 27 27 H 1.09001 * 109.46608 * 149.97813 * 1 2 3 28 28 H 1.08000 * 119.97092 * 0.04321 * 3 2 1 29 29 H 1.07997 * 119.98951 * 180.27982 * 4 3 2 30 30 H 1.09002 * 109.52401 * 57.68305 * 8 6 5 31 31 H 1.09004 * 109.52068 * 297.55951 * 8 6 5 32 32 H 1.08995 * 109.54674 * 62.85906 * 9 8 6 33 33 H 1.09007 * 109.53937 * 183.03159 * 9 8 6 34 34 H 1.08995 * 109.52612 * 176.89131 * 10 9 8 35 35 H 1.09004 * 109.52214 * 297.01676 * 10 9 8 36 36 H 0.96999 * 120.00091 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.01550 * 359.95487 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5804 1.1992 0.0053 5 6 4.2733 0.0033 -0.0009 6 6 5.7803 0.0053 -0.0015 7 1 6.1454 -0.8358 0.5880 8 6 6.2905 -0.1195 -1.4395 9 6 7.8210 -0.0571 -1.4385 10 6 8.2674 1.2499 -0.7761 11 6 7.6821 1.3227 0.6367 12 1 8.0719 0.4989 1.2345 13 6 8.0679 2.6329 1.2736 14 1 8.6706 3.3426 0.7263 15 6 7.6525 2.9251 2.5554 16 7 6.9191 2.0606 3.2220 17 14 8.1301 4.5493 3.3446 18 1 8.9511 5.3398 2.3925 19 1 6.9034 5.3107 3.6918 20 1 8.9163 4.2884 4.5772 21 8 6.2579 1.2282 0.5663 22 6 3.5825 -1.1965 -0.0009 23 9 4.2588 -2.3660 -0.0018 24 6 2.1976 -1.1968 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6575 2.1325 0.0007 29 1 4.1191 2.1352 0.0098 30 1 5.8929 0.6991 -2.0394 31 1 5.9650 -1.0710 -1.8602 32 1 8.2202 -0.9038 -0.8801 33 1 8.1879 -0.0913 -2.4644 34 1 9.3556 1.2774 -0.7214 35 1 7.9107 2.0962 -1.3632 36 1 6.6271 2.2660 4.1240 37 1 1.6577 -2.1321 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686641211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -86.918957 kcal Electronic energy + Delta-G solvation = -20231.547958 eV Core-core repulsion = 17080.352274 eV Total energy + Delta-G solvation = -3151.195684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55540 -39.20190 -37.79518 -33.51369 -32.65252 -32.11862 -30.23148 -29.92816 -27.06381 -25.30268 -23.16330 -22.48615 -21.78858 -20.51077 -19.21803 -16.91017 -16.54771 -16.17100 -15.59888 -15.27735 -14.61477 -14.41605 -14.26032 -13.72641 -13.61440 -13.51558 -13.33349 -13.13273 -12.70154 -12.26501 -11.99799 -11.90706 -11.51269 -11.33866 -10.98201 -10.86681 -10.70520 -10.67505 -10.34625 -10.25426 -9.88600 -9.65285 -8.88790 -8.58341 -8.51083 -8.24517 -7.81742 -6.01962 -4.14840 1.46394 1.56650 3.29082 3.37269 3.40839 3.88680 4.40541 4.51481 4.75819 4.96086 5.09656 5.25377 5.39790 5.44187 5.53592 5.56831 5.59237 5.69929 5.75066 5.87897 5.91640 6.09254 6.13328 6.26971 6.35835 6.37667 6.43850 6.58617 6.66238 6.77169 6.82145 6.86117 6.90324 6.96086 7.25675 7.51148 7.88836 8.27076 8.75910 9.09228 9.55695 11.05253 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.006532 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.226773 B = 4285.492613 C = 5203.521930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.136 4.136 4 C -0.053 4.053 5 C -0.097 4.097 6 C 0.124 3.876 7 H 0.053 0.947 8 C -0.137 4.137 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.219 3.781 12 H 0.014 0.986 13 C -0.526 4.526 14 H 0.065 0.935 15 C 0.078 3.922 16 N -0.858 5.858 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.348 6.348 22 C 0.100 3.900 23 F -0.142 7.142 24 C -0.163 4.163 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -4.808 -7.434 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.154 4.154 4 C -0.071 4.071 5 C -0.098 4.098 6 C 0.065 3.935 7 H 0.071 0.929 8 C -0.175 4.175 9 C -0.157 4.157 10 C -0.182 4.182 11 C 0.164 3.836 12 H 0.032 0.968 13 C -0.563 4.563 14 H 0.083 0.917 15 C -0.128 4.128 16 N -0.494 5.494 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.268 6.268 22 C 0.081 3.919 23 F -0.120 7.120 24 C -0.182 4.182 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.456 -4.748 -7.203 12.800 hybrid contribution 0.491 0.339 0.459 0.753 sum -8.965 -4.408 -6.744 12.053 Atomic orbital electron populations 1.20751 0.91000 1.02577 1.02331 1.19644 0.95918 0.92410 0.99329 1.21105 0.94309 0.97429 1.02570 1.21050 0.93205 0.98527 0.94354 1.19928 0.96393 0.91887 1.01578 1.20484 0.88119 0.92028 0.92918 0.92887 1.22113 0.96581 1.01163 0.97646 1.21613 0.95001 0.99254 0.99859 1.22260 1.00260 0.95605 1.00032 1.19730 0.77523 0.97334 0.89007 0.96808 1.21026 1.33180 1.03577 0.98513 0.91691 1.25080 0.94018 0.96636 0.97091 1.70058 1.33651 1.34529 1.11124 0.86572 0.78335 0.83984 0.79289 1.19605 1.20851 1.20930 1.88348 1.25037 1.32596 1.80773 1.17489 0.89846 0.80749 1.03833 1.91454 1.80474 1.46129 1.93986 1.20800 0.91857 0.98937 1.06559 0.91133 0.91441 0.91724 0.85770 0.83800 0.91674 0.92583 0.92589 0.92944 0.92387 0.92445 0.93009 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.07 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.14 -2.04 9.70 -39.58 -0.38 -2.43 16 4 C -0.05 -0.98 9.35 -39.59 -0.37 -1.35 16 5 C -0.10 -1.88 5.08 -104.55 -0.53 -2.41 16 6 C 0.12 2.64 2.64 -27.83 -0.07 2.57 16 7 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 8 C -0.14 -2.52 5.40 -26.59 -0.14 -2.67 16 9 C -0.12 -2.17 6.03 -26.55 -0.16 -2.33 16 10 C -0.14 -3.04 5.36 -26.59 -0.14 -3.18 16 11 C 0.22 5.65 2.50 -27.83 -0.07 5.58 16 12 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 13 C -0.53 -14.62 8.79 -34.44 -0.30 -14.93 16 14 H 0.06 1.76 7.74 -52.48 -0.41 1.35 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 16 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 O -0.35 -8.85 8.28 -35.23 -0.29 -9.14 16 22 C 0.10 1.76 7.24 -39.42 -0.29 1.48 16 23 F -0.14 -2.53 16.57 2.25 0.04 -2.49 16 24 C -0.16 -2.40 9.68 -39.51 -0.38 -2.78 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.14 2.83 7.35 -52.49 -0.39 2.44 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 310.22 15.07 4.68 4.68 Total: -1.00 -29.95 310.22 -8.48 -38.43 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.40 Total: -0.43 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.20 Total: -22.69 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.29 Total: -9.14 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.95 -8.48 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686641211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.485 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds