Wall clock time and date at job start Mon Mar 30 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38275 * 119.98472 * 2 1 4 4 C 1.38226 * 120.04916 * 179.74479 * 3 2 1 5 5 C 1.38222 * 120.02267 * 0.55616 * 4 3 2 6 6 C 1.50704 * 120.00851 * 179.71759 * 5 4 3 7 7 H 1.08991 * 110.55150 * 217.60137 * 6 5 4 8 8 C 1.55004 * 110.61539 * 94.72556 * 6 5 4 9 9 C 1.54810 * 102.08978 * 204.31659 * 8 6 5 10 10 C 1.54100 * 104.18994 * 20.88358 * 9 8 6 11 11 C 1.53006 * 109.87448 * 242.60525 * 10 9 8 12 12 C 1.50692 * 109.88164 * 121.60356 * 10 9 8 13 13 H 1.08002 * 120.00356 * 0.30100 * 12 10 9 14 14 C 1.37880 * 120.00132 * 180.30232 * 12 10 9 15 15 N 1.31516 * 119.99664 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00101 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46542 * 90.00443 * 16 14 12 18 18 H 1.48493 * 109.46964 * 210.00102 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00533 * 16 14 12 20 20 O 1.43741 * 107.29237 * 2.02662 * 10 9 8 21 21 C 1.38437 * 119.97771 * 359.44175 * 5 4 3 22 22 F 1.35102 * 120.02472 * 180.29828 * 21 5 4 23 23 C 1.38177 * 119.98871 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47207 * 269.97537 * 1 2 3 25 25 H 1.08993 * 109.47513 * 29.97893 * 1 2 3 26 26 H 1.09009 * 109.46969 * 149.98215 * 1 2 3 27 27 H 1.07995 * 119.97644 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.98825 * 180.27198 * 4 3 2 29 29 H 1.08997 * 110.90518 * 86.11920 * 8 6 5 30 30 H 1.08998 * 110.90800 * 322.51295 * 8 6 5 31 31 H 1.08996 * 110.48812 * 262.20321 * 9 8 6 32 32 H 1.09002 * 110.59926 * 139.61096 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99866 * 11 10 9 34 34 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99753 * 11 10 9 36 36 H 0.97001 * 119.99606 * 179.97438 * 15 14 12 37 37 H 1.07991 * 120.01623 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5803 1.1992 0.0053 5 6 4.2732 0.0033 -0.0010 6 6 5.7803 0.0054 -0.0016 7 1 6.1637 -0.7995 -0.6285 8 6 6.3268 -0.1206 1.4434 9 6 7.7311 0.5183 1.3158 10 6 7.6358 1.3900 0.0486 11 6 8.6192 0.8816 -1.0076 12 6 7.9462 2.8247 0.3891 13 1 8.1934 3.0976 1.4044 14 6 7.9147 3.7893 -0.5956 15 7 7.6132 3.4572 -1.8319 16 14 8.2988 5.5681 -0.1734 17 1 9.7556 5.8102 -0.3295 18 1 7.5471 6.4667 -1.0857 19 1 7.8992 5.8410 1.2305 20 8 6.2899 1.2816 -0.4443 21 6 3.5824 -1.1964 -0.0009 22 9 4.2588 -2.3659 -0.0009 23 6 2.1976 -1.1968 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6574 2.1326 0.0004 28 1 4.1190 2.1352 0.0098 29 1 6.4008 -1.1664 1.7414 30 1 5.7070 0.4392 2.1439 31 1 8.4913 -0.2530 1.1920 32 1 7.9527 1.1347 2.1871 33 1 8.3778 -0.1504 -1.2619 34 1 8.5461 1.5022 -1.9007 35 1 9.6340 0.9307 -0.6127 36 1 7.5906 4.1359 -2.5246 37 1 1.6577 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686651094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:46 Heat of formation + Delta-G solvation = -75.793511 kcal Electronic energy + Delta-G solvation = -20295.554866 eV Core-core repulsion = 17144.841617 eV Total energy + Delta-G solvation = -3150.713248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.60262 -39.28216 -38.01493 -33.58925 -32.29414 -31.00173 -30.23444 -29.64018 -27.17121 -25.34768 -23.92537 -22.49762 -21.50390 -20.11168 -19.32176 -17.07330 -16.62730 -16.15514 -15.54698 -15.34171 -14.79271 -14.39362 -13.75177 -13.63996 -13.56983 -13.34887 -13.12860 -12.87611 -12.46252 -12.16728 -11.88150 -11.73822 -11.37970 -11.20654 -10.97797 -10.89490 -10.66342 -10.48996 -10.38906 -10.20674 -9.83941 -9.57625 -9.09520 -8.58218 -8.52855 -8.26083 -7.93750 -5.97163 -4.13295 1.41322 1.51952 3.29171 3.36643 3.39467 3.83791 4.40774 4.47414 4.76683 4.92503 5.06931 5.25732 5.35799 5.41986 5.52184 5.55554 5.66343 5.71467 5.77899 5.85678 6.08095 6.18973 6.26695 6.37422 6.39334 6.54484 6.59610 6.73095 6.77928 6.81082 6.89333 6.91933 7.16696 7.21736 7.29298 7.77022 8.11812 8.34312 8.54652 8.99318 9.57074 11.04922 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.006229 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.690929 B = 4493.870327 C = 5278.257084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.056 4.056 5 C -0.101 4.101 6 C 0.104 3.896 7 H 0.062 0.938 8 C -0.139 4.139 9 C -0.141 4.141 10 C 0.226 3.774 11 C -0.149 4.149 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.080 3.920 15 N -0.860 5.860 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.335 6.335 21 C 0.099 3.901 22 F -0.142 7.142 23 C -0.163 4.163 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.010 0.990 34 H 0.090 0.910 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -6.999 3.584 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.074 4.074 5 C -0.102 4.102 6 C 0.045 3.955 7 H 0.079 0.921 8 C -0.177 4.177 9 C -0.179 4.179 10 C 0.188 3.812 11 C -0.207 4.207 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.126 4.126 15 N -0.496 5.496 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.255 6.255 21 C 0.080 3.920 22 F -0.121 7.121 23 C -0.182 4.182 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.348 -6.813 3.266 12.813 hybrid contribution 0.469 0.510 0.255 0.738 sum -9.880 -6.303 3.521 12.237 Atomic orbital electron populations 1.20755 0.90966 1.02732 1.02242 1.19664 0.95953 0.92406 0.99263 1.21131 0.94311 0.97465 1.02403 1.21157 0.93271 0.98738 0.94256 1.19969 0.96444 0.91915 1.01919 1.21589 0.88099 0.91449 0.94334 0.92080 1.23039 0.97878 0.99941 0.96841 1.23079 0.94823 0.98693 1.01269 1.19668 0.79894 0.94243 0.87353 1.22174 0.97835 0.97413 1.03305 1.21062 1.48418 0.91474 0.94987 0.92025 1.25033 0.93805 0.98756 0.94986 1.69965 1.45824 1.33197 1.00593 0.86667 0.78312 0.84965 0.78438 1.20604 1.21139 1.19839 1.89260 1.30339 1.30248 1.75619 1.17488 0.89847 0.80728 1.03959 1.91454 1.80474 1.46130 1.94002 1.20807 0.91858 0.98948 1.06546 0.91191 0.91360 0.91675 0.85685 0.83391 0.92116 0.91393 0.92820 0.91437 0.97121 0.89117 0.94575 0.93015 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.07 -0.96 5.88 -104.63 -0.62 -1.58 16 3 C -0.13 -1.99 9.70 -39.57 -0.38 -2.37 16 4 C -0.06 -1.02 9.39 -39.59 -0.37 -1.39 16 5 C -0.10 -1.92 5.14 -104.55 -0.54 -2.46 16 6 C 0.10 2.20 3.23 -26.82 -0.09 2.11 16 7 H 0.06 1.31 7.90 -51.93 -0.41 0.90 16 8 C -0.14 -2.69 6.57 -24.72 -0.16 -2.86 16 9 C -0.14 -2.98 6.26 -25.20 -0.16 -3.14 16 10 C 0.23 5.64 0.74 -91.20 -0.07 5.57 16 11 C -0.15 -3.67 8.39 37.16 0.31 -3.36 16 12 C -0.52 -14.17 8.26 -34.44 -0.28 -14.45 16 13 H 0.06 1.64 7.33 -52.49 -0.38 1.26 16 14 C 0.08 2.17 5.26 -17.82 -0.09 2.08 16 15 N -0.86 -24.37 10.94 55.43 0.61 -23.77 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 O -0.34 -8.48 8.88 -35.23 -0.31 -8.79 16 21 C 0.10 1.68 7.25 -39.42 -0.29 1.39 16 22 F -0.14 -2.43 16.65 2.25 0.04 -2.39 16 23 C -0.16 -2.31 9.68 -39.51 -0.38 -2.69 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.15 2.98 7.28 -52.49 -0.38 2.60 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 31 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.07 1.41 7.40 -51.93 -0.38 1.03 16 33 H 0.01 0.22 8.11 -51.93 -0.42 -0.20 16 34 H 0.09 2.47 6.03 -51.93 -0.31 2.15 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -28.99 307.91 -8.01 -37.00 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.20 Total: 1.27 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.76 Total: -23.83 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.61 Total: -23.77 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.31 Total: -8.79 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.99 -8.01 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686651094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.790 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds