Wall clock time and date at job start Mon Mar 30 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38275 * 119.98472 * 2 1 4 4 C 1.38226 * 120.04916 * 179.74479 * 3 2 1 5 5 C 1.38222 * 120.02267 * 0.55616 * 4 3 2 6 6 C 1.50704 * 120.00851 * 179.71759 * 5 4 3 7 7 H 1.08991 * 110.55150 * 217.60137 * 6 5 4 8 8 C 1.55004 * 110.61539 * 94.72556 * 6 5 4 9 9 C 1.54810 * 102.08978 * 204.31659 * 8 6 5 10 10 C 1.54100 * 104.18994 * 20.88358 * 9 8 6 11 11 C 1.53006 * 109.87448 * 242.60525 * 10 9 8 12 12 C 1.50692 * 109.88164 * 121.60356 * 10 9 8 13 13 H 1.08002 * 120.00356 * 0.30100 * 12 10 9 14 14 C 1.37880 * 120.00132 * 180.30232 * 12 10 9 15 15 N 1.31516 * 119.99664 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00101 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46542 * 90.00443 * 16 14 12 18 18 H 1.48493 * 109.46964 * 210.00102 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00533 * 16 14 12 20 20 O 1.43741 * 107.29237 * 2.02662 * 10 9 8 21 21 C 1.38437 * 119.97771 * 359.44175 * 5 4 3 22 22 F 1.35102 * 120.02472 * 180.29828 * 21 5 4 23 23 C 1.38177 * 119.98871 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47207 * 269.97537 * 1 2 3 25 25 H 1.08993 * 109.47513 * 29.97893 * 1 2 3 26 26 H 1.09009 * 109.46969 * 149.98215 * 1 2 3 27 27 H 1.07995 * 119.97644 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.98825 * 180.27198 * 4 3 2 29 29 H 1.08997 * 110.90518 * 86.11920 * 8 6 5 30 30 H 1.08998 * 110.90800 * 322.51295 * 8 6 5 31 31 H 1.08996 * 110.48812 * 262.20321 * 9 8 6 32 32 H 1.09002 * 110.59926 * 139.61096 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99866 * 11 10 9 34 34 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99753 * 11 10 9 36 36 H 0.97001 * 119.99606 * 179.97438 * 15 14 12 37 37 H 1.07991 * 120.01623 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1977 0.0000 4 6 3.5803 1.1992 0.0053 5 6 4.2732 0.0033 -0.0010 6 6 5.7803 0.0054 -0.0016 7 1 6.1637 -0.7995 -0.6285 8 6 6.3268 -0.1206 1.4434 9 6 7.7311 0.5183 1.3158 10 6 7.6358 1.3900 0.0486 11 6 8.6192 0.8816 -1.0076 12 6 7.9462 2.8247 0.3891 13 1 8.1934 3.0976 1.4044 14 6 7.9147 3.7893 -0.5956 15 7 7.6132 3.4572 -1.8319 16 14 8.2988 5.5681 -0.1734 17 1 9.7556 5.8102 -0.3295 18 1 7.5471 6.4667 -1.0857 19 1 7.8992 5.8410 1.2305 20 8 6.2899 1.2816 -0.4443 21 6 3.5824 -1.1964 -0.0009 22 9 4.2588 -2.3659 -0.0009 23 6 2.1976 -1.1968 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6574 2.1326 0.0004 28 1 4.1190 2.1352 0.0098 29 1 6.4008 -1.1664 1.7414 30 1 5.7070 0.4392 2.1439 31 1 8.4913 -0.2530 1.1920 32 1 7.9527 1.1347 2.1871 33 1 8.3778 -0.1504 -1.2619 34 1 8.5461 1.5022 -1.9007 35 1 9.6340 0.9307 -0.6127 36 1 7.5906 4.1359 -2.5246 37 1 1.6577 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686651094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:46 Heat of formation + Delta-G solvation = -90.466401 kcal Electronic energy + Delta-G solvation = -20296.191130 eV Core-core repulsion = 17144.841617 eV Total energy + Delta-G solvation = -3151.349513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90184 -40.74736 -39.53124 -35.29003 -33.85574 -32.77766 -31.49143 -31.25634 -28.51398 -27.35538 -25.46451 -23.75604 -22.94150 -21.57613 -21.17110 -18.86079 -17.95787 -17.59952 -17.02341 -16.71171 -16.48442 -16.12604 -15.37863 -15.05492 -14.91753 -14.56633 -14.36746 -14.34911 -14.15504 -13.72747 -13.23534 -13.07905 -12.87399 -12.78214 -12.61472 -12.49702 -12.32957 -12.25547 -11.98440 -11.90255 -11.62927 -11.33337 -10.98422 -10.59366 -9.99233 -9.79197 -9.38973 -8.03761 -6.26948 0.17433 0.28929 1.41850 1.43021 1.52839 2.43274 2.59759 3.04005 3.27543 3.48039 3.74009 3.86605 3.99414 4.04283 4.14576 4.26438 4.36153 4.54732 4.61163 4.72168 4.73096 4.86248 4.88973 4.92190 4.97417 5.02598 5.10319 5.17404 5.19615 5.28222 5.32505 5.37390 5.57330 5.58293 5.67197 5.99725 6.09326 6.33525 6.58725 7.02579 7.47409 8.97544 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.006229 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.690929 B = 4493.870327 C = 5278.257084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.079 4.079 5 C -0.129 4.129 6 C 0.101 3.899 7 H 0.051 0.949 8 C -0.128 4.128 9 C -0.137 4.137 10 C 0.210 3.790 11 C -0.142 4.142 12 C -0.541 4.541 13 H 0.059 0.941 14 C 0.032 3.968 15 N -0.890 5.890 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.269 1.269 20 O -0.364 6.364 21 C 0.088 3.912 22 F -0.146 7.146 23 C -0.154 4.154 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.258 0.742 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -7.727 4.549 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.130 4.130 6 C 0.042 3.958 7 H 0.068 0.932 8 C -0.165 4.165 9 C -0.175 4.175 10 C 0.173 3.827 11 C -0.200 4.200 12 C -0.578 4.578 13 H 0.077 0.923 14 C -0.170 4.170 15 N -0.527 5.527 16 Si 0.777 3.223 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.193 1.193 20 O -0.284 6.284 21 C 0.068 3.932 22 F -0.125 7.125 23 C -0.173 4.173 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.480 -7.548 4.242 15.190 hybrid contribution 1.050 0.684 -0.061 1.254 sum -11.431 -6.864 4.181 13.973 Atomic orbital electron populations 1.20865 0.87500 1.04306 1.03828 1.20140 0.98228 0.91199 0.96461 1.21384 0.92848 0.99465 1.01257 1.20967 0.94887 0.97201 0.96625 1.19857 0.95182 0.93250 1.04669 1.21665 0.89955 0.89320 0.94857 0.93151 1.22969 0.96437 1.01219 0.95893 1.22994 0.96491 0.98620 0.99369 1.19779 0.79970 0.94087 0.88912 1.22059 0.98350 0.97438 1.02153 1.21412 1.48443 0.93088 0.94898 0.92318 1.25766 0.93721 1.02670 0.94839 1.70116 1.46937 1.34215 1.01406 0.85677 0.78284 0.80138 0.78195 1.19831 1.21058 1.19335 1.89193 1.30418 1.32559 1.76243 1.17629 0.90939 0.79850 1.04738 1.91438 1.80821 1.46073 1.94133 1.21207 0.90612 1.00784 1.04659 0.89381 0.90154 0.89864 0.83391 0.86732 0.89599 0.91433 0.91215 0.91514 0.95882 0.92113 0.93898 0.93228 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.06 -1.40 5.88 -19.87 -0.12 -1.51 16 3 C -0.13 -3.68 9.70 22.28 0.22 -3.46 16 4 C -0.08 -2.91 9.39 22.26 0.21 -2.70 16 5 C -0.13 -4.92 5.14 -19.82 -0.10 -5.02 16 6 C 0.10 4.34 3.23 30.54 0.10 4.44 16 7 H 0.05 2.22 7.90 -2.39 -0.02 2.20 16 8 C -0.13 -4.91 6.57 31.90 0.21 -4.70 16 9 C -0.14 -5.80 6.26 31.58 0.20 -5.60 16 10 C 0.21 10.76 0.74 -11.17 -0.01 10.75 16 11 C -0.14 -7.17 8.39 71.98 0.60 -6.57 16 12 C -0.54 -30.08 8.26 25.60 0.21 -29.86 16 13 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 14 C 0.03 1.81 5.26 84.66 0.45 2.25 16 15 N -0.89 -52.18 10.94 21.45 0.23 -51.95 16 16 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 O -0.36 -19.18 8.88 -148.98 -1.32 -20.51 16 21 C 0.09 2.87 7.25 22.38 0.16 3.03 16 22 F -0.15 -4.83 16.65 44.97 0.75 -4.08 16 23 C -0.15 -3.91 9.68 22.31 0.22 -3.69 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 27 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.11 4.94 7.28 -2.91 -0.02 4.92 16 29 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 31 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 32 H 0.07 2.79 7.40 -2.39 -0.02 2.77 16 33 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 34 H 0.06 3.43 6.03 -2.39 -0.01 3.41 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.16 3.02 8.06 -2.92 -0.02 3.00 16 Total: -1.00 -64.58 307.91 5.80 -58.78 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.06 Total: 15.53 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 3.06 Total: -43.47 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.23 Total: -51.95 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.32 Total: -20.51 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.75 Total: -4.08 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.58 5.80 -58.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686651094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.687 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds