Wall clock time and date at job start Mon Mar 30 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99033 * 2 1 4 4 C 1.38224 * 120.05570 * 179.97438 * 3 2 1 5 5 C 1.38221 * 120.02395 * 0.25357 * 4 3 2 6 6 C 1.50695 * 120.01208 * 179.74633 * 5 4 3 7 7 H 1.08995 * 110.27377 * 144.29697 * 6 5 4 8 8 C 1.54939 * 110.30874 * 266.38761 * 6 5 4 9 9 C 1.55419 * 100.89345 * 155.28910 * 8 6 5 10 10 C 1.54378 * 102.30755 * 325.99005 * 9 8 6 11 11 C 1.52998 * 109.82929 * 261.77212 * 10 9 8 12 12 C 1.50700 * 109.90378 * 140.84359 * 10 9 8 13 13 H 1.07994 * 120.00501 * 29.11459 * 12 10 9 14 14 C 1.37877 * 119.99689 * 209.11642 * 12 10 9 15 15 N 1.31520 * 120.00145 * 173.47026 * 14 12 10 16 16 Si 1.86800 * 120.00173 * 353.47469 * 14 12 10 17 17 H 1.48498 * 109.47595 * 86.64076 * 16 14 12 18 18 H 1.48503 * 109.46919 * 206.64357 * 16 14 12 19 19 H 1.48506 * 109.46873 * 326.63758 * 16 14 12 20 20 O 1.43237 * 107.58770 * 21.28506 * 10 9 8 21 21 C 1.38436 * 119.97282 * 359.48923 * 5 4 3 22 22 F 1.35103 * 120.02743 * 180.25637 * 21 5 4 23 23 C 1.38182 * 119.98843 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47031 * 90.00177 * 1 2 3 25 25 H 1.08997 * 109.47053 * 210.00215 * 1 2 3 26 26 H 1.08996 * 109.46885 * 330.00330 * 1 2 3 27 27 H 1.08003 * 119.96989 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.98751 * 179.97438 * 4 3 2 29 29 H 1.09007 * 111.12815 * 273.27863 * 8 6 5 30 30 H 1.09003 * 111.12804 * 37.44049 * 8 6 5 31 31 H 1.09002 * 110.88294 * 207.75224 * 9 8 6 32 32 H 1.09002 * 110.75764 * 84.17067 * 9 8 6 33 33 H 1.08999 * 109.47020 * 184.09217 * 11 10 9 34 34 H 1.08996 * 109.47380 * 304.08776 * 11 10 9 35 35 H 1.08996 * 109.47543 * 64.09357 * 11 10 9 36 36 H 0.96999 * 120.00115 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.01054 * 0.04363 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1991 0.0005 5 6 4.2733 0.0032 -0.0042 6 6 5.7803 0.0052 -0.0094 7 1 6.1611 -0.8257 0.5843 8 6 6.3131 -0.0827 -1.4616 9 6 7.7150 0.5685 -1.3000 10 6 7.4586 1.6366 -0.2152 11 6 7.2456 3.0022 -0.8715 12 6 8.6314 1.7007 0.7290 13 1 9.6215 1.4501 0.3781 14 6 8.4402 2.0793 2.0409 15 7 9.4368 2.0123 2.8966 16 14 6.7658 2.6872 2.6031 17 1 5.9263 1.5286 3.0007 18 1 6.9341 3.5981 3.7639 19 1 6.1059 3.4185 1.4917 20 8 6.2789 1.2521 0.5005 21 6 3.5825 -1.1965 0.0012 22 9 4.2587 -2.3661 0.0017 23 6 2.1977 -1.1968 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6575 2.1325 -0.0004 28 1 4.1191 2.1351 0.0001 29 1 6.3953 -1.1196 -1.7879 30 1 5.6893 0.4938 -2.1447 31 1 8.0379 1.0321 -2.2322 32 1 8.4447 -0.1651 -0.9573 33 1 7.1375 3.7636 -0.0990 34 1 8.1036 3.2412 -1.4997 35 1 6.3439 2.9747 -1.4832 36 1 9.3024 2.2790 3.8194 37 1 1.6577 -2.1321 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686651096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:48 Heat of formation + Delta-G solvation = -75.630838 kcal Electronic energy + Delta-G solvation = -20570.833539 eV Core-core repulsion = 17420.127345 eV Total energy + Delta-G solvation = -3150.706194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.73089 -39.61169 -38.36264 -33.66154 -32.25673 -31.52049 -30.50488 -30.29159 -27.43627 -25.28120 -24.05250 -22.68838 -21.84847 -20.49674 -19.38422 -16.97359 -16.77182 -16.58361 -15.99131 -15.52638 -15.34896 -14.39098 -13.93132 -13.84193 -13.69665 -13.37150 -13.33258 -12.71048 -12.46521 -12.29490 -12.20452 -12.01313 -11.80870 -11.55569 -11.44587 -11.27539 -11.11097 -10.50812 -10.37054 -10.13725 -9.96955 -9.55308 -9.02718 -8.78420 -8.65884 -8.39391 -8.12832 -6.02028 -4.10609 1.23644 1.32904 3.45548 3.60402 3.65329 3.71690 4.32252 4.51608 4.70916 4.77740 4.89663 5.05632 5.22298 5.26002 5.31120 5.38923 5.43575 5.53494 5.60227 5.70514 5.89772 6.02656 6.05782 6.10187 6.20075 6.27888 6.33983 6.41553 6.50487 6.56287 6.59497 6.68471 6.78050 6.90338 7.01931 7.40545 7.70855 8.06261 8.52092 8.93833 9.62991 11.07665 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.007117 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.620062 B = 3933.085107 C = 4289.163319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.066 4.066 5 C -0.113 4.113 6 C 0.122 3.878 7 H 0.076 0.924 8 C -0.142 4.142 9 C -0.131 4.131 10 C 0.197 3.803 11 C -0.142 4.142 12 C -0.532 4.532 13 H 0.078 0.922 14 C 0.081 3.919 15 N -0.898 5.898 16 Si 0.923 3.077 17 H -0.284 1.284 18 H -0.318 1.318 19 H -0.259 1.259 20 O -0.369 6.369 21 C 0.105 3.895 22 F -0.138 7.138 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -3.823 -8.195 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.084 4.084 5 C -0.114 4.114 6 C 0.065 3.935 7 H 0.094 0.906 8 C -0.180 4.180 9 C -0.169 4.169 10 C 0.159 3.841 11 C -0.199 4.199 12 C -0.569 4.569 13 H 0.096 0.904 14 C -0.123 4.123 15 N -0.535 5.535 16 Si 0.757 3.243 17 H -0.211 1.211 18 H -0.249 1.249 19 H -0.185 1.185 20 O -0.290 6.290 21 C 0.085 3.915 22 F -0.117 7.117 23 C -0.178 4.178 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.978 -3.730 -7.867 18.196 hybrid contribution -0.502 -0.101 0.354 0.622 sum -16.479 -3.831 -7.513 18.512 Atomic orbital electron populations 1.20769 0.90760 1.02886 1.02364 1.19688 0.96100 0.92331 0.98884 1.21106 0.94133 0.97625 1.02367 1.21051 0.93499 0.98273 0.95536 1.20157 0.96771 0.92137 1.02305 1.21475 0.87492 0.90154 0.94405 0.90584 1.23216 0.97869 1.01159 0.95770 1.23175 0.95431 0.99055 0.99209 1.20159 0.83635 0.90408 0.89888 1.22271 0.98837 0.99217 0.99616 1.21069 0.93164 1.48047 0.94616 0.90351 1.24996 0.97380 0.93568 0.96319 1.69973 1.32349 1.47107 1.04080 0.86013 0.83747 0.78071 0.76459 1.21071 1.24865 1.18475 1.88033 1.45004 1.36465 1.59495 1.17450 0.89853 0.80744 1.03407 1.91478 1.80404 1.45934 1.93880 1.20869 0.91866 0.99105 1.05979 0.91051 0.91516 0.91303 0.85575 0.84168 0.90954 0.91217 0.91618 0.90605 0.92592 0.92724 0.95396 0.92765 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.07 -0.85 5.88 -104.63 -0.62 -1.47 16 3 C -0.13 -1.79 9.70 -39.58 -0.38 -2.17 16 4 C -0.07 -1.08 9.37 -39.59 -0.37 -1.45 16 5 C -0.11 -1.99 5.10 -104.56 -0.53 -2.53 16 6 C 0.12 2.44 3.42 -26.86 -0.09 2.35 16 7 H 0.08 1.61 7.85 -51.93 -0.41 1.20 16 8 C -0.14 -2.47 6.57 -24.42 -0.16 -2.63 16 9 C -0.13 -2.56 6.08 -24.72 -0.15 -2.71 16 10 C 0.20 4.56 0.78 -91.05 -0.07 4.48 16 11 C -0.14 -2.97 8.37 37.16 0.31 -2.66 16 12 C -0.53 -14.93 8.65 -34.44 -0.30 -15.23 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 14 C 0.08 2.39 5.46 -17.82 -0.10 2.29 16 15 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 16 Si 0.92 24.27 24.39 -169.99 -4.15 20.12 16 17 H -0.28 -7.64 7.11 56.52 0.40 -7.24 16 18 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 19 H -0.26 -6.39 5.50 56.52 0.31 -6.08 16 20 O -0.37 -8.56 4.53 -35.23 -0.16 -8.72 16 21 C 0.10 1.68 7.25 -39.42 -0.29 1.40 16 22 F -0.14 -2.28 16.60 2.25 0.04 -2.24 16 23 C -0.16 -2.12 9.68 -39.51 -0.38 -2.50 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.14 2.44 7.32 -52.49 -0.38 2.05 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.07 1.15 7.80 -51.93 -0.40 0.74 16 32 H 0.08 1.55 7.85 -51.93 -0.41 1.14 16 33 H 0.06 1.25 6.04 -51.93 -0.31 0.93 16 34 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -31.42 301.59 -7.08 -38.50 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.36 Total: -1.55 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.77 Total: -23.40 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.25 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.16 Total: -8.72 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.15 Total: 20.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.42 -7.08 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686651096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.130 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds