Wall clock time and date at job start Mon Mar 30 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99033 * 2 1 4 4 C 1.38224 * 120.05570 * 179.97438 * 3 2 1 5 5 C 1.38221 * 120.02395 * 0.25357 * 4 3 2 6 6 C 1.50695 * 120.01208 * 179.74633 * 5 4 3 7 7 H 1.08995 * 110.27377 * 144.29697 * 6 5 4 8 8 C 1.54939 * 110.30874 * 266.38761 * 6 5 4 9 9 C 1.55419 * 100.89345 * 155.28910 * 8 6 5 10 10 C 1.54378 * 102.30755 * 325.99005 * 9 8 6 11 11 C 1.52998 * 109.82929 * 261.77212 * 10 9 8 12 12 C 1.50700 * 109.90378 * 140.84359 * 10 9 8 13 13 H 1.07994 * 120.00501 * 29.11459 * 12 10 9 14 14 C 1.37877 * 119.99689 * 209.11642 * 12 10 9 15 15 N 1.31520 * 120.00145 * 173.47026 * 14 12 10 16 16 Si 1.86800 * 120.00173 * 353.47469 * 14 12 10 17 17 H 1.48498 * 109.47595 * 86.64076 * 16 14 12 18 18 H 1.48503 * 109.46919 * 206.64357 * 16 14 12 19 19 H 1.48506 * 109.46873 * 326.63758 * 16 14 12 20 20 O 1.43237 * 107.58770 * 21.28506 * 10 9 8 21 21 C 1.38436 * 119.97282 * 359.48923 * 5 4 3 22 22 F 1.35103 * 120.02743 * 180.25637 * 21 5 4 23 23 C 1.38182 * 119.98843 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47031 * 90.00177 * 1 2 3 25 25 H 1.08997 * 109.47053 * 210.00215 * 1 2 3 26 26 H 1.08996 * 109.46885 * 330.00330 * 1 2 3 27 27 H 1.08003 * 119.96989 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.98751 * 179.97438 * 4 3 2 29 29 H 1.09007 * 111.12815 * 273.27863 * 8 6 5 30 30 H 1.09003 * 111.12804 * 37.44049 * 8 6 5 31 31 H 1.09002 * 110.88294 * 207.75224 * 9 8 6 32 32 H 1.09002 * 110.75764 * 84.17067 * 9 8 6 33 33 H 1.08999 * 109.47020 * 184.09217 * 11 10 9 34 34 H 1.08996 * 109.47380 * 304.08776 * 11 10 9 35 35 H 1.08996 * 109.47543 * 64.09357 * 11 10 9 36 36 H 0.96999 * 120.00115 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.01054 * 0.04363 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1991 0.0005 5 6 4.2733 0.0032 -0.0042 6 6 5.7803 0.0052 -0.0094 7 1 6.1611 -0.8257 0.5843 8 6 6.3131 -0.0827 -1.4616 9 6 7.7150 0.5685 -1.3000 10 6 7.4586 1.6366 -0.2152 11 6 7.2456 3.0022 -0.8715 12 6 8.6314 1.7007 0.7290 13 1 9.6215 1.4501 0.3781 14 6 8.4402 2.0793 2.0409 15 7 9.4368 2.0123 2.8966 16 14 6.7658 2.6872 2.6031 17 1 5.9263 1.5286 3.0007 18 1 6.9341 3.5981 3.7639 19 1 6.1059 3.4185 1.4917 20 8 6.2789 1.2521 0.5005 21 6 3.5825 -1.1965 0.0012 22 9 4.2587 -2.3661 0.0017 23 6 2.1977 -1.1968 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6575 2.1325 -0.0004 28 1 4.1191 2.1351 0.0001 29 1 6.3953 -1.1196 -1.7879 30 1 5.6893 0.4938 -2.1447 31 1 8.0379 1.0321 -2.2322 32 1 8.4447 -0.1651 -0.9573 33 1 7.1375 3.7636 -0.0990 34 1 8.1036 3.2412 -1.4997 35 1 6.3439 2.9747 -1.4832 36 1 9.3024 2.2790 3.8194 37 1 1.6577 -2.1321 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686651096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:47 Heat of formation + Delta-G solvation = -93.696094 kcal Electronic energy + Delta-G solvation = -20571.616908 eV Core-core repulsion = 17420.127345 eV Total energy + Delta-G solvation = -3151.489563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.94547 -41.03619 -39.68997 -35.23704 -34.01342 -33.20578 -31.91570 -31.48310 -28.57910 -27.29416 -25.47823 -23.81803 -23.22986 -21.77451 -21.18675 -18.79697 -18.15600 -18.05399 -17.31066 -16.96547 -16.64885 -16.13692 -15.37726 -15.07424 -14.93511 -14.70065 -14.43752 -14.38337 -14.20786 -13.87800 -13.56921 -13.34124 -13.13048 -12.92461 -12.83252 -12.58827 -12.43034 -12.25618 -12.14682 -11.79783 -11.59284 -11.35225 -10.99386 -10.77762 -10.20470 -9.84244 -9.44599 -8.31681 -6.40786 0.12250 0.23555 1.36178 1.49093 1.58011 2.42576 2.54930 2.96801 3.19731 3.26906 3.60739 3.74221 3.88085 3.94851 4.11832 4.23275 4.31896 4.37148 4.55172 4.59194 4.69029 4.78342 4.81375 4.85158 4.89020 4.96102 5.02812 5.08419 5.12282 5.20785 5.25243 5.28796 5.45954 5.53681 5.65020 5.70266 5.94699 6.09616 6.44669 6.70506 7.36313 8.81898 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.007117 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.620062 B = 3933.085107 C = 4289.163319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.059 4.059 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.138 4.138 6 C 0.114 3.886 7 H 0.048 0.952 8 C -0.125 4.125 9 C -0.128 4.128 10 C 0.187 3.813 11 C -0.136 4.136 12 C -0.529 4.529 13 H 0.043 0.957 14 C 0.026 3.974 15 N -0.947 5.947 16 Si 0.981 3.019 17 H -0.298 1.298 18 H -0.324 1.324 19 H -0.233 1.233 20 O -0.385 6.385 21 C 0.086 3.914 22 F -0.148 7.148 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.263 0.737 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.871 -3.642 -10.052 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.057 3.943 7 H 0.066 0.934 8 C -0.162 4.162 9 C -0.166 4.166 10 C 0.149 3.851 11 C -0.193 4.193 12 C -0.567 4.567 13 H 0.061 0.939 14 C -0.172 4.172 15 N -0.587 5.587 16 Si 0.813 3.187 17 H -0.226 1.226 18 H -0.255 1.255 19 H -0.157 1.157 20 O -0.307 6.307 21 C 0.067 3.933 22 F -0.127 7.127 23 C -0.173 4.173 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.173 0.827 28 H 0.145 0.855 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.861 -3.548 -9.756 22.410 hybrid contribution 0.687 -0.247 0.901 1.160 sum -19.174 -3.796 -8.855 21.458 Atomic orbital electron populations 1.20875 0.87578 1.04271 1.03902 1.20167 0.98230 0.91317 0.96238 1.21431 0.92931 0.99482 1.00854 1.21044 0.94956 0.97126 0.96953 1.19990 0.95141 0.93528 1.05202 1.21544 0.89595 0.87801 0.95383 0.93409 1.23149 0.96107 1.02396 0.94584 1.23074 0.96601 0.97893 0.99032 1.20181 0.82200 0.93027 0.89710 1.22142 1.00936 0.96742 0.99508 1.21467 0.93890 1.45887 0.95415 0.93853 1.25764 1.00340 0.94328 0.96800 1.70098 1.34424 1.49653 1.04493 0.85106 0.79979 0.77164 0.76428 1.22570 1.25529 1.15695 1.87916 1.44515 1.37841 1.60453 1.17689 0.91003 0.79980 1.04600 1.91450 1.80843 1.46283 1.94101 1.21225 0.90641 1.00905 1.04561 0.89234 0.90209 0.89970 0.82735 0.85502 0.89174 0.89080 0.88959 0.92597 0.94286 0.91549 0.92215 0.92889 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.57 16 2 C -0.06 -1.20 5.88 -19.87 -0.12 -1.31 16 3 C -0.13 -2.97 9.70 22.27 0.22 -2.76 16 4 C -0.08 -2.55 9.37 22.26 0.21 -2.34 16 5 C -0.14 -4.71 5.10 -19.82 -0.10 -4.81 16 6 C 0.11 4.52 3.42 30.51 0.10 4.63 16 7 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 8 C -0.12 -4.11 6.57 32.09 0.21 -3.90 16 9 C -0.13 -4.90 6.08 31.89 0.19 -4.71 16 10 C 0.19 8.59 0.78 -11.07 -0.01 8.58 16 11 C -0.14 -5.43 8.37 71.98 0.60 -4.83 16 12 C -0.53 -30.64 8.65 25.60 0.22 -30.42 16 13 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 14 C 0.03 1.57 5.46 84.65 0.46 2.04 16 15 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 16 Si 0.98 51.43 24.39 68.60 1.67 53.10 16 17 H -0.30 -16.11 7.11 99.48 0.71 -15.41 16 18 H -0.32 -17.04 7.11 99.48 0.71 -16.33 16 19 H -0.23 -11.05 5.50 99.48 0.55 -10.50 16 20 O -0.39 -17.80 4.53 -148.98 -0.67 -18.48 16 21 C 0.09 2.64 7.25 22.38 0.16 2.81 16 22 F -0.15 -4.79 16.60 44.97 0.75 -4.05 16 23 C -0.15 -3.60 9.68 22.31 0.22 -3.39 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 26 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.13 4.19 7.32 -2.91 -0.02 4.17 16 29 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.09 2.64 8.05 -2.39 -0.02 2.62 16 31 H 0.09 3.01 7.80 -2.39 -0.02 2.99 16 32 H 0.06 2.32 7.85 -2.39 -0.02 2.30 16 33 H 0.04 1.67 6.04 -2.39 -0.01 1.65 16 34 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -71.32 301.59 6.02 -65.30 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.89 Total: 6.46 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.08 Total: -40.99 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.30 Total: -61.34 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.67 Total: -18.48 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.75 Total: -4.05 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 1.67 Total: 53.10 kcal Total: -71.32 6.02 -65.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686651096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.400 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds