Wall clock time and date at job start Mon Mar 30 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47038 * 2 1 4 4 C 1.53002 * 109.46755 * 120.00142 * 2 1 3 5 5 C 1.52995 * 109.47452 * 294.99404 * 4 2 1 6 6 O 1.42899 * 109.47055 * 179.97438 * 5 4 2 7 7 C 1.35680 * 116.99791 * 179.97438 * 6 5 4 8 8 C 1.39307 * 119.81735 * 359.73563 * 7 6 5 9 9 C 1.36443 * 120.18498 * 179.75871 * 8 7 6 10 10 C 1.40827 * 119.80746 * 0.50427 * 9 8 7 11 11 C 1.41219 * 120.17498 * 179.72010 * 10 9 8 12 12 H 1.08003 * 119.99476 * 155.16935 * 11 10 9 13 13 C 1.39890 * 120.00486 * 335.16951 * 11 10 9 14 14 N 1.30882 * 119.99551 * 342.15984 * 13 11 10 15 15 Si 1.86798 * 119.99945 * 162.15629 * 13 11 10 16 16 H 1.48505 * 109.46917 * 94.66010 * 15 13 11 17 17 H 1.48499 * 109.46757 * 214.65756 * 15 13 11 18 18 H 1.48492 * 109.47195 * 334.65822 * 15 13 11 19 19 C 1.40836 * 119.64691 * 359.74975 * 10 9 8 20 20 C 1.36436 * 119.80625 * 359.97438 * 19 10 9 21 21 C 1.50700 * 109.46632 * 240.00114 * 2 1 3 22 22 O 1.20832 * 119.99875 * 239.99900 * 21 2 1 23 23 O 1.34230 * 120.00184 * 60.00575 * 21 2 1 24 24 H 1.09001 * 109.47381 * 59.99402 * 1 2 3 25 25 H 1.08999 * 109.47563 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99937 * 1 2 3 27 27 H 1.09007 * 109.46426 * 174.99382 * 4 2 1 28 28 H 1.09000 * 109.47212 * 55.00269 * 4 2 1 29 29 H 1.09007 * 109.46878 * 60.00232 * 5 4 2 30 30 H 1.09001 * 109.47159 * 300.00888 * 5 4 2 31 31 H 1.08005 * 119.91048 * 0.02562 * 8 7 6 32 32 H 1.08007 * 120.09573 * 180.25170 * 9 8 7 33 33 H 0.97002 * 119.99495 * 179.97438 * 14 13 11 34 34 H 1.07998 * 120.09519 * 179.97438 * 19 10 9 35 35 H 1.08005 * 119.90852 * 179.97438 * 20 19 10 36 36 H 0.96695 * 116.99565 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6353 0.0688 2.4953 6 8 2.1111 -0.6052 3.6621 7 6 1.8352 -0.0316 4.8603 8 6 1.1223 1.1642 4.9081 9 6 0.8364 1.7450 6.1092 10 6 1.2735 1.1376 7.3022 11 6 0.9871 1.7351 8.5492 12 1 0.9465 1.1285 9.4419 13 6 0.7559 3.1125 8.6284 14 7 1.1366 3.8970 7.6524 15 14 -0.0962 3.8319 10.1270 16 1 0.9240 4.2986 11.1000 17 1 -0.9446 4.9777 9.7115 18 1 -0.9452 2.7915 10.7607 19 6 1.9983 -0.0686 7.2448 20 6 2.2709 -0.6392 6.0358 21 6 2.0322 -0.7104 -1.2305 22 8 2.7269 -1.6928 -1.1197 23 8 1.7080 -0.2517 -2.4496 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7996 1.2055 28 1 1.6053 -1.7199 1.2951 29 1 0.5489 0.1471 2.5390 30 1 2.0699 1.0674 2.4494 31 1 0.7911 1.6308 3.9920 32 1 0.2801 2.6701 6.1447 33 1 0.9759 4.8521 7.7071 34 1 2.3374 -0.5404 8.1552 35 1 2.8269 -1.5639 5.9899 36 1 2.0540 -0.7405 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691804375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:10 Heat of formation + Delta-G solvation = -128.443470 kcal Electronic energy + Delta-G solvation = -18951.789158 eV Core-core repulsion = 15786.420046 eV Total energy + Delta-G solvation = -3165.369112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60670 -38.82970 -36.78605 -36.31738 -35.12934 -33.30639 -29.78877 -29.58671 -28.48350 -25.71444 -24.74480 -23.11542 -21.14900 -20.47022 -19.93864 -18.24370 -17.37833 -17.20793 -16.63468 -16.05614 -15.46692 -15.26092 -14.41683 -14.03115 -13.94643 -13.73596 -13.15402 -12.80182 -12.56960 -12.41874 -12.18493 -11.89788 -11.81016 -11.61551 -11.43029 -11.16985 -11.07906 -10.93630 -10.86002 -10.62078 -10.46288 -9.86239 -9.78343 -9.36479 -9.00433 -7.65064 -7.00653 -6.72898 -4.24927 1.98613 2.73433 2.77065 2.96850 3.08070 3.12378 3.21756 3.95136 4.03471 4.60809 4.62461 4.63570 4.83526 5.19499 5.32597 5.38238 5.53879 5.62752 5.65724 5.67418 5.87107 6.10505 6.12220 6.15430 6.25818 6.30458 6.73890 6.89852 7.07085 7.28239 7.41802 7.56390 7.65735 7.91043 8.00517 8.15888 8.45314 8.65620 8.90450 8.99726 10.21997 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.003366 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.840446 B = 8316.379292 C = 8809.446749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.113 0.887 4 C -0.106 4.106 5 C 0.069 3.931 6 O -0.328 6.328 7 C -0.009 4.009 8 C -0.173 4.173 9 C -0.134 4.134 10 C 0.087 3.913 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.800 5.800 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.196 4.196 20 C -0.113 4.113 21 C 0.484 3.516 22 O -0.512 6.512 23 O -0.517 6.517 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.279 0.721 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 -2.726 -14.331 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.131 0.869 4 C -0.143 4.143 5 C -0.007 4.007 6 O -0.244 6.244 7 C -0.052 4.052 8 C -0.192 4.192 9 C -0.154 4.154 10 C 0.085 3.915 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.427 5.427 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.216 4.216 20 C -0.132 4.132 21 C 0.326 3.674 22 O -0.399 6.399 23 O -0.328 6.328 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.821 -2.704 -14.050 14.423 hybrid contribution -0.143 0.406 0.039 0.432 sum -1.964 -2.298 -14.010 14.333 Atomic orbital electron populations 1.21879 0.91656 1.03319 1.03827 1.20913 0.98567 1.01120 0.89211 0.86893 1.21376 1.02903 0.99735 0.90299 1.22408 0.98538 0.95401 0.84343 1.85783 1.76202 1.50127 1.12330 1.18567 1.07059 0.95948 0.83631 1.20606 1.04193 0.96308 0.98131 1.20935 1.02351 1.01080 0.91016 1.17596 0.89473 0.91000 0.93424 1.19466 1.42749 0.92502 0.94626 0.90513 1.25872 0.93402 0.97358 0.97530 1.69845 1.34996 1.05562 1.32258 0.86338 0.80010 0.78987 0.81600 1.19659 1.20136 1.18494 1.20603 1.05557 1.00299 0.95111 1.19623 1.03290 0.99764 0.90506 1.23505 0.76732 0.82446 0.84710 1.90741 1.35765 1.26175 1.87248 1.84538 1.72350 1.59069 1.16885 0.91147 0.91818 0.90265 0.90043 0.90162 0.92690 0.92936 0.88751 0.86156 0.91035 0.88212 0.88513 0.73303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.88 37.16 0.33 -0.98 16 2 C -0.08 -0.79 2.83 -91.77 -0.26 -1.05 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.37 4.40 -26.73 -0.12 -1.49 16 5 C 0.07 1.08 4.49 37.16 0.17 1.24 16 6 O -0.33 -6.73 10.12 -18.74 -0.19 -6.92 16 7 C -0.01 -0.21 6.71 -38.79 -0.26 -0.47 16 8 C -0.17 -4.04 8.96 -39.83 -0.36 -4.40 16 9 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 10 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 11 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 12 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 13 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 14 N -0.80 -20.62 10.97 55.54 0.61 -20.01 16 15 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 C -0.20 -4.85 9.74 -39.25 -0.38 -5.24 16 20 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16 21 C 0.48 5.17 7.63 36.01 0.27 5.44 16 22 O -0.51 -7.18 16.68 -18.75 -0.31 -7.49 16 23 O -0.52 -4.03 13.33 -39.26 -0.52 -4.55 16 24 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.70 6.57 -51.92 -0.34 0.36 16 27 H 0.08 1.13 7.96 -51.92 -0.41 0.72 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.80 6.08 -51.92 -0.32 0.49 16 30 H 0.05 0.80 7.63 -51.93 -0.40 0.40 16 31 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 32 H 0.12 3.18 6.18 -52.48 -0.32 2.85 16 33 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 34 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 36 H 0.41 1.50 9.10 45.56 0.41 1.91 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.84 308.60 -6.95 -37.79 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.79 Total: 5.85 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.37 Total: -22.89 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.61 Total: -20.01 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.03 Total: -18.96 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.84 -6.95 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691804375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.655 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds