Wall clock time and date at job start Mon Mar 30 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47038 * 2 1 4 4 C 1.53002 * 109.46755 * 120.00142 * 2 1 3 5 5 C 1.52995 * 109.47452 * 294.99404 * 4 2 1 6 6 O 1.42899 * 109.47055 * 179.97438 * 5 4 2 7 7 C 1.35680 * 116.99791 * 179.97438 * 6 5 4 8 8 C 1.39307 * 119.81735 * 359.73563 * 7 6 5 9 9 C 1.36443 * 120.18498 * 179.75871 * 8 7 6 10 10 C 1.40827 * 119.80746 * 0.50427 * 9 8 7 11 11 C 1.41219 * 120.17498 * 179.72010 * 10 9 8 12 12 H 1.08003 * 119.99476 * 155.16935 * 11 10 9 13 13 C 1.39890 * 120.00486 * 335.16951 * 11 10 9 14 14 N 1.30882 * 119.99551 * 342.15984 * 13 11 10 15 15 Si 1.86798 * 119.99945 * 162.15629 * 13 11 10 16 16 H 1.48505 * 109.46917 * 94.66010 * 15 13 11 17 17 H 1.48499 * 109.46757 * 214.65756 * 15 13 11 18 18 H 1.48492 * 109.47195 * 334.65822 * 15 13 11 19 19 C 1.40836 * 119.64691 * 359.74975 * 10 9 8 20 20 C 1.36436 * 119.80625 * 359.97438 * 19 10 9 21 21 C 1.50700 * 109.46632 * 240.00114 * 2 1 3 22 22 O 1.20832 * 119.99875 * 239.99900 * 21 2 1 23 23 O 1.34230 * 120.00184 * 60.00575 * 21 2 1 24 24 H 1.09001 * 109.47381 * 59.99402 * 1 2 3 25 25 H 1.08999 * 109.47563 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47170 * 299.99937 * 1 2 3 27 27 H 1.09007 * 109.46426 * 174.99382 * 4 2 1 28 28 H 1.09000 * 109.47212 * 55.00269 * 4 2 1 29 29 H 1.09007 * 109.46878 * 60.00232 * 5 4 2 30 30 H 1.09001 * 109.47159 * 300.00888 * 5 4 2 31 31 H 1.08005 * 119.91048 * 0.02562 * 8 7 6 32 32 H 1.08007 * 120.09573 * 180.25170 * 9 8 7 33 33 H 0.97002 * 119.99495 * 179.97438 * 14 13 11 34 34 H 1.07998 * 120.09519 * 179.97438 * 19 10 9 35 35 H 1.08005 * 119.90852 * 179.97438 * 20 19 10 36 36 H 0.96695 * 116.99565 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6353 0.0688 2.4953 6 8 2.1111 -0.6052 3.6621 7 6 1.8352 -0.0316 4.8603 8 6 1.1223 1.1642 4.9081 9 6 0.8364 1.7450 6.1092 10 6 1.2735 1.1376 7.3022 11 6 0.9871 1.7351 8.5492 12 1 0.9465 1.1285 9.4419 13 6 0.7559 3.1125 8.6284 14 7 1.1366 3.8970 7.6524 15 14 -0.0962 3.8319 10.1270 16 1 0.9240 4.2986 11.1000 17 1 -0.9446 4.9777 9.7115 18 1 -0.9452 2.7915 10.7607 19 6 1.9983 -0.0686 7.2448 20 6 2.2709 -0.6392 6.0358 21 6 2.0322 -0.7104 -1.2305 22 8 2.7269 -1.6928 -1.1197 23 8 1.7080 -0.2517 -2.4496 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7996 1.2055 28 1 1.6053 -1.7199 1.2951 29 1 0.5489 0.1471 2.5390 30 1 2.0699 1.0674 2.4494 31 1 0.7911 1.6308 3.9920 32 1 0.2801 2.6701 6.1447 33 1 0.9759 4.8521 7.7071 34 1 2.3374 -0.5404 8.1552 35 1 2.8269 -1.5639 5.9899 36 1 2.0540 -0.7405 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691804375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:10 Heat of formation + Delta-G solvation = -146.837294 kcal Electronic energy + Delta-G solvation = -18952.586774 eV Core-core repulsion = 15786.420046 eV Total energy + Delta-G solvation = -3166.166728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45310 -40.49589 -38.34101 -37.21614 -36.22321 -35.12959 -31.53959 -31.29394 -29.86940 -26.81444 -26.35344 -24.31846 -22.91232 -22.08791 -20.97714 -19.25325 -19.05483 -18.70941 -17.71285 -17.14511 -16.92682 -16.60183 -16.03795 -15.72170 -15.05899 -14.79439 -14.60461 -14.13936 -13.99304 -13.86483 -13.70098 -13.40188 -13.06023 -12.75372 -12.74183 -12.54232 -12.44226 -12.29497 -12.13159 -12.01790 -11.64808 -11.50623 -11.35959 -11.18510 -10.83097 -9.54839 -8.89191 -8.58811 -6.21033 0.95536 1.06181 1.16898 1.41183 1.50805 1.57016 1.95112 2.24397 2.71264 2.74179 3.69180 3.71862 3.78500 3.98499 4.20450 4.23430 4.34396 4.42520 4.48396 4.52657 4.79876 4.87134 4.90761 4.95646 5.02044 5.15924 5.17139 5.29532 5.38739 5.54864 5.59593 5.68178 5.99336 6.07940 6.25722 6.58125 6.81340 6.96856 6.97511 7.12187 8.38204 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.003366 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.840446 B = 8316.379292 C = 8809.446749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 H 0.133 0.867 4 C -0.096 4.096 5 C 0.062 3.938 6 O -0.339 6.339 7 C -0.002 4.002 8 C -0.174 4.174 9 C -0.154 4.154 10 C 0.054 3.946 11 C -0.500 4.500 12 H 0.075 0.925 13 C 0.035 3.965 14 N -0.830 5.830 15 Si 0.981 3.019 16 H -0.265 1.265 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.206 4.206 20 C -0.123 4.123 21 C 0.492 3.508 22 O -0.552 6.552 23 O -0.506 6.506 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.287 0.713 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -2.138 -15.418 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 H 0.150 0.850 4 C -0.134 4.134 5 C -0.014 4.014 6 O -0.255 6.255 7 C -0.045 4.045 8 C -0.192 4.192 9 C -0.174 4.174 10 C 0.052 3.948 11 C -0.530 4.530 12 H 0.093 0.907 13 C -0.179 4.179 14 N -0.457 5.457 15 Si 0.802 3.198 16 H -0.189 1.189 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.226 4.226 20 C -0.142 4.142 21 C 0.336 3.664 22 O -0.443 6.443 23 O -0.320 6.320 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.505 -2.119 -15.186 15.537 hybrid contribution 0.116 0.161 0.177 0.266 sum -2.389 -1.957 -15.009 15.324 Atomic orbital electron populations 1.21884 0.90388 1.03469 1.04690 1.20885 0.99476 1.01495 0.87643 0.84959 1.21265 1.02168 0.99408 0.90565 1.22739 0.99428 0.95903 0.83281 1.85782 1.76372 1.50771 1.12609 1.18693 1.05646 0.95462 0.84730 1.20840 1.03641 0.96312 0.98436 1.20925 1.03383 1.01192 0.91893 1.17959 0.90554 0.92126 0.94120 1.19713 1.44921 0.93684 0.94700 0.90730 1.26702 0.93350 0.97145 1.00709 1.69888 1.35511 1.06204 1.34131 0.85216 0.78821 0.78176 0.77618 1.18942 1.19015 1.18394 1.20793 1.05530 1.00082 0.96198 1.19904 1.03347 1.00547 0.90411 1.23501 0.75760 0.81588 0.85566 1.90739 1.37703 1.27961 1.87874 1.84485 1.71848 1.58930 1.16734 0.89471 0.92072 0.90207 0.91234 0.90955 0.91326 0.92174 0.85900 0.87399 0.90233 0.87365 0.86477 0.71023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.88 71.98 0.64 -1.54 16 2 C -0.08 -1.35 2.83 -11.54 -0.03 -1.38 16 3 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.10 -2.36 4.40 30.59 0.13 -2.23 16 5 C 0.06 1.80 4.49 71.98 0.32 2.13 16 6 O -0.34 -13.44 10.12 -89.98 -0.91 -14.35 16 7 C 0.00 -0.07 6.71 22.79 0.15 0.08 16 8 C -0.17 -7.97 8.96 22.11 0.20 -7.77 16 9 C -0.15 -8.08 8.64 22.48 0.19 -7.89 16 10 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 11 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 12 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 13 C 0.03 1.75 5.13 85.23 0.44 2.19 16 14 N -0.83 -43.23 10.97 21.82 0.24 -42.99 16 15 Si 0.98 38.11 29.60 68.60 2.03 40.14 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 C -0.21 -10.36 9.74 22.48 0.22 -10.14 16 20 C -0.12 -5.75 9.92 22.11 0.22 -5.53 16 21 C 0.49 9.53 7.63 71.24 0.54 10.07 16 22 O -0.55 -14.94 16.68 21.95 0.37 -14.58 16 23 O -0.51 -6.49 13.33 -51.41 -0.69 -7.18 16 24 H 0.09 1.02 8.11 -2.39 -0.02 1.00 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 1.19 6.57 -2.38 -0.02 1.17 16 27 H 0.07 1.87 7.96 -2.38 -0.02 1.85 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.84 6.08 -2.38 -0.01 1.83 16 30 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 31 H 0.12 4.79 6.27 -2.91 -0.02 4.77 16 32 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 33 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 34 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 35 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 36 H 0.43 2.00 9.10 -74.06 -0.67 1.32 16 Total: -1.00 -66.63 308.60 4.59 -62.05 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.43 Total: 22.98 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 3.12 Total: -46.07 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.24 Total: -42.99 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.23 Total: -36.11 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -66.63 4.59 -62.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691804375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.791 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds