Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99578 * 2 1 4 4 C 1.38754 * 120.05846 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94549 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05376 * 0.02602 * 5 4 3 7 7 C 1.38249 * 120.11403 * 359.95500 * 6 5 4 8 8 C 1.50700 * 119.97183 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47205 * 89.99798 * 8 7 6 10 10 H 1.09004 * 109.46828 * 54.99865 * 9 8 7 11 11 C 1.52996 * 109.47352 * 174.99758 * 9 8 7 12 12 C 1.50697 * 109.47210 * 185.00294 * 11 9 8 13 13 H 1.07994 * 119.99910 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99892 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00017 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47392 * 89.99984 * 16 14 12 18 18 H 1.48507 * 109.47568 * 209.99923 * 16 14 12 19 19 H 1.48498 * 109.47193 * 329.99831 * 16 14 12 20 20 C 1.50697 * 109.47194 * 295.00394 * 9 8 7 21 21 O 1.20833 * 119.99747 * 240.00031 * 20 9 8 22 22 O 1.34230 * 120.00262 * 59.71653 * 20 9 8 23 23 C 1.38160 * 120.05496 * 0.27805 * 7 6 5 24 24 H 1.08998 * 109.47252 * 60.00914 * 1 2 3 25 25 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47522 * 299.99854 * 1 2 3 27 27 H 1.08003 * 120.02391 * 0.05148 * 4 3 2 28 28 H 1.07999 * 119.97349 * 180.02562 * 5 4 3 29 29 H 1.08007 * 119.94162 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47088 * 330.00103 * 8 7 6 31 31 H 1.08997 * 109.47220 * 209.99820 * 8 7 6 32 32 H 1.09001 * 109.46987 * 305.00364 * 11 9 8 33 33 H 1.09002 * 109.47051 * 64.99843 * 11 9 8 34 34 H 0.97006 * 119.99931 * 179.97438 * 15 14 12 35 35 H 0.96699 * 116.99771 * 180.27188 * 22 20 9 36 36 H 1.07999 * 120.03073 * 179.74688 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3017 3.6759 -0.0016 7 6 4.0558 2.5172 -0.0007 8 6 5.5606 2.5983 -0.0019 9 6 6.0710 2.6277 1.4403 10 1 5.6827 1.7644 1.9807 11 6 7.6003 2.5842 1.4411 12 6 8.0994 2.4892 2.8599 13 1 7.3961 2.4629 3.6790 14 6 9.4539 2.4369 3.1121 15 7 10.3103 2.4704 2.1147 16 14 10.0725 2.3198 4.8708 17 1 10.1973 0.8915 5.2576 18 1 11.3997 2.9781 4.9736 19 1 9.1126 2.9966 5.7793 20 6 5.6040 3.8928 2.1128 21 8 6.4116 4.6792 2.5480 22 8 4.2910 4.1489 2.2232 23 6 3.4311 1.2849 -0.0050 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2126 2.3203 -0.0001 28 1 1.3338 4.5114 -0.0011 29 1 3.7920 4.6382 -0.0024 30 1 5.8752 3.5060 -0.5171 31 1 5.9710 1.7286 -0.5148 32 1 7.9394 1.7149 0.8777 33 1 7.9898 3.4913 0.9789 34 1 11.2633 2.4340 2.2922 35 1 4.0400 4.9750 2.6588 36 1 4.0206 0.3800 -0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691813942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = -114.572677 kcal Electronic energy + Delta-G solvation = -19810.405489 eV Core-core repulsion = 16645.637860 eV Total energy + Delta-G solvation = -3164.767629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18308 -39.46435 -37.50985 -35.51513 -34.44358 -32.55266 -30.72835 -29.98749 -27.42083 -26.74808 -24.30563 -22.82782 -22.32761 -20.91284 -19.32602 -17.70149 -17.25159 -16.34439 -16.25819 -16.05245 -15.73700 -15.48639 -14.65376 -14.46148 -14.03049 -13.75913 -13.18343 -12.89271 -12.80352 -12.35714 -12.05644 -11.89952 -11.50183 -11.40400 -11.20168 -11.02946 -10.80463 -10.73404 -10.57011 -10.45587 -10.30011 -9.60319 -9.41032 -9.12896 -8.55146 -8.29596 -7.96344 -5.93693 -3.92857 1.49393 1.66418 3.12709 3.28941 3.37551 3.43500 3.48938 3.83741 3.98792 4.53329 4.83306 4.92977 5.01818 5.05868 5.21152 5.32768 5.43797 5.46235 5.54360 5.66497 5.70734 5.80243 5.93662 6.18905 6.32400 6.39861 6.48886 6.60352 6.69879 6.87609 6.95493 7.20871 7.49251 7.56620 7.71518 8.00869 8.39845 8.77679 9.06542 9.68693 11.18229 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.004680 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.627208 B = 5981.408210 C = 6303.400355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.087 4.087 6 C -0.113 4.113 7 C -0.035 4.035 8 C -0.077 4.077 9 C -0.064 4.064 10 H 0.096 0.904 11 C 0.034 3.966 12 C -0.502 4.502 13 H 0.050 0.950 14 C 0.058 3.942 15 N -0.898 5.898 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.473 3.527 21 O -0.487 6.487 22 O -0.521 6.521 23 C -0.145 4.145 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.388 0.612 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.543 -0.764 -6.036 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.105 4.105 6 C -0.131 4.131 7 C -0.035 4.035 8 C -0.114 4.114 9 C -0.083 4.083 10 H 0.114 0.886 11 C -0.003 4.003 12 C -0.541 4.541 13 H 0.069 0.931 14 C -0.142 4.142 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.314 3.686 21 O -0.371 6.371 22 O -0.332 6.332 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.908 -1.103 -6.142 19.911 hybrid contribution -0.065 0.685 1.435 1.591 sum -18.972 -0.418 -4.707 19.552 Atomic orbital electron populations 1.22979 0.78963 1.03501 1.01088 1.86062 1.20908 1.27335 1.89129 1.18940 0.92273 0.83866 0.97665 1.21084 0.99378 0.92590 1.10331 1.20786 0.94579 0.96536 0.98631 1.20798 0.93278 0.97902 1.01167 1.19728 0.95854 0.92150 0.95750 1.20729 0.89869 1.04001 0.96809 1.21405 1.01341 0.92529 0.93026 0.88608 1.19145 0.84387 0.98427 0.98334 1.21000 0.91679 1.49496 0.91876 0.93145 1.24899 0.96937 0.95473 0.96888 1.69943 1.01938 1.51320 1.30580 0.86605 0.78190 0.77909 0.85368 1.20767 1.21252 1.20026 1.23794 0.79063 0.88759 0.77033 1.90735 1.54684 1.47669 1.44003 1.84849 1.28332 1.45528 1.74495 1.20295 0.91124 0.98347 1.06548 0.92959 0.88605 0.92880 0.86248 0.86418 0.86418 0.90584 0.89340 0.94904 0.95306 0.93084 0.75554 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.11 10.50 -19.42 -0.20 -4.31 16 3 C 0.12 1.60 6.69 -39.21 -0.26 1.34 16 4 C -0.22 -2.58 9.04 -39.43 -0.36 -2.94 16 5 C -0.09 -1.04 10.04 -39.61 -0.40 -1.43 16 6 C -0.11 -1.52 6.87 -39.56 -0.27 -1.79 16 7 C -0.03 -0.51 4.55 -104.65 -0.48 -0.99 16 8 C -0.08 -1.23 4.83 -27.88 -0.13 -1.37 16 9 C -0.06 -1.27 2.27 -91.77 -0.21 -1.48 16 10 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 11 C 0.03 0.86 4.10 -27.89 -0.11 0.74 16 12 C -0.50 -14.35 7.75 -34.44 -0.27 -14.62 16 13 H 0.05 1.44 7.61 -52.49 -0.40 1.04 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 16 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.47 9.43 7.19 36.00 0.26 9.69 16 21 O -0.49 -11.80 15.74 -18.76 -0.30 -12.10 16 22 O -0.52 -8.01 9.26 -39.26 -0.36 -8.37 16 23 C -0.14 -2.11 9.64 -39.43 -0.38 -2.49 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.12 1.14 6.30 -52.48 -0.33 0.81 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.51 7.57 -52.48 -0.40 1.11 16 30 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 31 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.79 7.96 -51.93 -0.41 0.38 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.39 4.42 9.10 45.56 0.41 4.83 16 36 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -34.13 306.76 -6.25 -40.38 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.01 Total: 1.27 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.72 Total: -12.48 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.86 Total: -24.78 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.13 -6.25 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691813942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.189 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds