Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99578 * 2 1 4 4 C 1.38754 * 120.05846 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94549 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05376 * 0.02602 * 5 4 3 7 7 C 1.38249 * 120.11403 * 359.95500 * 6 5 4 8 8 C 1.50700 * 119.97183 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47205 * 89.99798 * 8 7 6 10 10 H 1.09004 * 109.46828 * 54.99865 * 9 8 7 11 11 C 1.52996 * 109.47352 * 174.99758 * 9 8 7 12 12 C 1.50697 * 109.47210 * 185.00294 * 11 9 8 13 13 H 1.07994 * 119.99910 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99892 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00017 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47392 * 89.99984 * 16 14 12 18 18 H 1.48507 * 109.47568 * 209.99923 * 16 14 12 19 19 H 1.48498 * 109.47193 * 329.99831 * 16 14 12 20 20 C 1.50697 * 109.47194 * 295.00394 * 9 8 7 21 21 O 1.20833 * 119.99747 * 240.00031 * 20 9 8 22 22 O 1.34230 * 120.00262 * 59.71653 * 20 9 8 23 23 C 1.38160 * 120.05496 * 0.27805 * 7 6 5 24 24 H 1.08998 * 109.47252 * 60.00914 * 1 2 3 25 25 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47522 * 299.99854 * 1 2 3 27 27 H 1.08003 * 120.02391 * 0.05148 * 4 3 2 28 28 H 1.07999 * 119.97349 * 180.02562 * 5 4 3 29 29 H 1.08007 * 119.94162 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47088 * 330.00103 * 8 7 6 31 31 H 1.08997 * 109.47220 * 209.99820 * 8 7 6 32 32 H 1.09001 * 109.46987 * 305.00364 * 11 9 8 33 33 H 1.09002 * 109.47051 * 64.99843 * 11 9 8 34 34 H 0.97006 * 119.99931 * 179.97438 * 15 14 12 35 35 H 0.96699 * 116.99771 * 180.27188 * 22 20 9 36 36 H 1.07999 * 120.03073 * 179.74688 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3017 3.6759 -0.0016 7 6 4.0558 2.5172 -0.0007 8 6 5.5606 2.5983 -0.0019 9 6 6.0710 2.6277 1.4403 10 1 5.6827 1.7644 1.9807 11 6 7.6003 2.5842 1.4411 12 6 8.0994 2.4892 2.8599 13 1 7.3961 2.4629 3.6790 14 6 9.4539 2.4369 3.1121 15 7 10.3103 2.4704 2.1147 16 14 10.0725 2.3198 4.8708 17 1 10.1973 0.8915 5.2576 18 1 11.3997 2.9781 4.9736 19 1 9.1126 2.9966 5.7793 20 6 5.6040 3.8928 2.1128 21 8 6.4116 4.6792 2.5480 22 8 4.2910 4.1489 2.2232 23 6 3.4311 1.2849 -0.0050 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2126 2.3203 -0.0001 28 1 1.3338 4.5114 -0.0011 29 1 3.7920 4.6382 -0.0024 30 1 5.8752 3.5060 -0.5171 31 1 5.9710 1.7286 -0.5148 32 1 7.9394 1.7149 0.8777 33 1 7.9898 3.4913 0.9789 34 1 11.2633 2.4340 2.2922 35 1 4.0400 4.9750 2.6588 36 1 4.0206 0.3800 -0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691813942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = -136.668469 kcal Electronic energy + Delta-G solvation = -19811.363634 eV Core-core repulsion = 16645.637860 eV Total energy + Delta-G solvation = -3165.725774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42752 -40.73516 -38.54178 -37.04214 -36.05098 -34.47056 -32.00953 -31.13856 -28.67979 -27.96386 -25.79136 -24.68414 -23.37384 -22.04929 -20.89353 -18.85039 -18.80263 -18.24295 -17.65055 -17.03940 -16.70116 -16.55681 -16.49082 -16.19264 -15.12286 -14.83015 -14.40493 -14.32332 -14.18656 -13.93069 -13.42761 -13.13987 -13.05374 -12.73469 -12.66928 -12.55195 -12.37619 -12.22788 -12.19175 -11.76660 -11.67476 -11.44687 -11.15743 -11.10711 -10.52529 -9.63479 -8.95711 -8.16479 -6.22236 0.47634 0.65778 1.37205 1.39453 1.49665 1.52585 2.39422 2.42908 2.47965 2.94040 3.18616 3.81645 4.00041 4.17106 4.21763 4.26027 4.39258 4.41619 4.45634 4.55130 4.64503 4.71265 4.78164 4.95047 5.02071 5.07564 5.23142 5.42061 5.45834 5.60161 5.63164 5.76437 5.83218 5.86565 5.96240 6.22166 6.58995 6.85840 7.30563 7.43199 8.95682 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.004680 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.627208 B = 5981.408210 C = 6303.400355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.210 4.210 5 C -0.081 4.081 6 C -0.122 4.122 7 C -0.047 4.047 8 C -0.067 4.067 9 C -0.059 4.059 10 H 0.098 0.902 11 C 0.040 3.960 12 C -0.516 4.516 13 H 0.045 0.955 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.275 1.275 20 C 0.485 3.515 21 O -0.537 6.537 22 O -0.498 6.498 23 C -0.164 4.164 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.020 0.980 33 H -0.002 1.002 34 H 0.262 0.738 35 H 0.411 0.589 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.143 -0.643 -5.573 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.063 3.937 4 C -0.229 4.229 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.047 4.047 8 C -0.104 4.104 9 C -0.078 4.078 10 H 0.116 0.884 11 C 0.003 3.997 12 C -0.554 4.554 13 H 0.063 0.937 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.200 1.200 20 C 0.329 3.671 21 O -0.425 6.425 22 O -0.311 6.311 23 C -0.183 4.183 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.271 0.729 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.561 -0.991 -5.681 22.319 hybrid contribution 0.574 0.628 1.248 1.511 sum -20.988 -0.362 -4.433 21.454 Atomic orbital electron populations 1.23299 0.76637 1.05296 1.02195 1.86037 1.23374 1.27179 1.89019 1.19081 0.92130 0.84910 0.97567 1.21434 1.00828 0.91896 1.08720 1.21132 0.94027 0.97792 0.96981 1.20931 0.94205 0.97468 1.01463 1.19542 0.94597 0.92964 0.97582 1.20577 0.91471 1.04317 0.94027 1.21151 0.97806 0.92980 0.95891 0.88378 1.18930 0.88270 0.96155 0.96327 1.21360 0.91951 1.48894 0.93192 0.93671 1.25763 0.97332 0.95324 1.01088 1.70057 1.02242 1.52352 1.32644 0.85604 0.77515 0.78583 0.80287 1.19189 1.20725 1.20013 1.23588 0.79896 0.87903 0.75761 1.90724 1.56288 1.49259 1.46272 1.84778 1.25332 1.46880 1.74072 1.20360 0.92120 0.98135 1.07659 0.91558 0.86708 0.91897 0.83418 0.83318 0.86014 0.90502 0.88894 0.96155 0.98410 0.92905 0.72914 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.15 10.50 -92.42 -0.97 -9.12 16 3 C 0.11 2.75 6.69 22.51 0.15 2.90 16 4 C -0.21 -4.34 9.04 22.37 0.20 -4.13 16 5 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 6 C -0.12 -3.02 6.87 22.28 0.15 -2.86 16 7 C -0.05 -1.34 4.55 -19.88 -0.09 -1.43 16 8 C -0.07 -2.16 4.83 29.85 0.14 -2.01 16 9 C -0.06 -2.39 2.27 -11.54 -0.03 -2.42 16 10 H 0.10 3.92 8.14 -2.38 -0.02 3.90 16 11 C 0.04 2.11 4.10 29.85 0.12 2.23 16 12 C -0.52 -30.17 7.75 25.60 0.20 -29.97 16 13 H 0.05 2.62 7.61 -2.91 -0.02 2.60 16 14 C 0.00 0.13 5.46 84.65 0.46 0.59 16 15 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 16 Si 0.95 46.54 29.54 68.60 2.03 48.57 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 20 C 0.49 19.30 7.19 71.23 0.51 19.81 16 21 O -0.54 -26.41 15.74 21.94 0.35 -26.06 16 22 O -0.50 -14.35 9.26 -51.41 -0.48 -14.83 16 23 C -0.16 -4.69 9.64 22.37 0.22 -4.47 16 24 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 0.73 7.66 -2.39 -0.02 0.72 16 27 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 28 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.12 2.86 7.57 -2.91 -0.02 2.84 16 30 H 0.08 2.44 8.09 -2.38 -0.02 2.42 16 31 H 0.09 2.87 8.08 -2.39 -0.02 2.85 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.00 -0.15 7.96 -2.39 -0.02 -0.16 16 34 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 35 H 0.41 8.24 9.10 -74.06 -0.67 7.56 16 36 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -74.84 306.76 5.00 -69.84 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.41 Total: 10.91 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.38 Total: -21.81 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.10 Total: -50.01 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.84 5.00 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691813942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.833 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds