Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99994 * 2 1 4 4 C 1.38736 * 120.05678 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94518 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05837 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94758 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47263 * 89.99612 * 7 6 5 9 9 H 1.09000 * 109.46861 * 305.00416 * 8 7 6 10 10 C 1.52996 * 109.47228 * 185.00098 * 8 7 6 11 11 C 1.50698 * 109.47407 * 175.00434 * 10 8 7 12 12 H 1.08004 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00293 * 180.02562 * 11 10 8 14 14 N 1.31522 * 120.00035 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00178 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46827 * 90.00042 * 15 13 11 17 17 H 1.48500 * 109.47026 * 209.99497 * 15 13 11 18 18 H 1.48494 * 109.47181 * 329.99930 * 15 13 11 19 19 C 1.50706 * 109.46927 * 65.00039 * 8 7 6 20 20 O 1.20825 * 119.99859 * 119.99464 * 19 8 7 21 21 O 1.34224 * 120.00295 * 300.00423 * 19 8 7 22 22 C 1.38268 * 120.10694 * 0.27530 * 6 5 4 23 23 C 1.38145 * 120.05848 * 359.45024 * 22 6 5 24 24 H 1.09003 * 109.47112 * 299.99772 * 1 2 3 25 25 H 1.08995 * 109.47236 * 60.00101 * 1 2 3 26 26 H 1.09001 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02593 * 359.94932 * 4 3 2 28 28 H 1.08003 * 119.97113 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46633 * 330.00054 * 7 6 5 30 30 H 1.08997 * 109.47180 * 210.00016 * 7 6 5 31 31 H 1.08999 * 109.47181 * 295.00552 * 10 8 7 32 32 H 1.08999 * 109.47126 * 54.99932 * 10 8 7 33 33 H 0.97002 * 119.99863 * 180.02562 * 14 13 11 34 34 H 0.96700 * 117.00196 * 179.97438 * 21 19 8 35 35 H 1.08001 * 119.96802 * 179.70826 * 22 6 5 36 36 H 1.08001 * 120.02958 * 180.27605 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 6 4.2172 5.4719 -1.4456 9 1 4.7698 4.7020 -1.9843 10 6 5.0215 6.7734 -1.4486 11 6 5.3545 7.1550 -2.8680 12 1 5.0257 6.5312 -3.6861 13 6 6.0797 8.2996 -3.1221 14 7 6.4805 9.0589 -2.1258 15 14 6.4931 8.7722 -4.8815 16 1 5.4138 9.6324 -5.4295 17 1 7.7785 9.5154 -4.9054 18 1 6.6155 7.5446 -5.7080 19 6 2.8886 5.7008 -2.1192 20 8 2.6133 6.7929 -2.5566 21 8 2.0111 4.6915 -2.2330 22 6 1.9211 3.6047 0.0041 23 6 1.2915 2.3750 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3799 -0.0001 28 1 5.1345 2.5750 -0.0011 29 1 4.9442 4.9385 0.5108 30 1 3.3583 5.7466 0.5108 31 1 4.4317 7.5660 -0.9882 32 1 5.9434 6.6321 -0.8845 33 1 6.9904 9.8645 -2.3046 34 1 1.1721 4.8867 -2.6723 35 1 1.3343 4.5113 0.0085 36 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691815703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = -115.140008 kcal Electronic energy + Delta-G solvation = -19781.207780 eV Core-core repulsion = 16616.415550 eV Total energy + Delta-G solvation = -3164.792230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18747 -39.48504 -37.56167 -35.52430 -34.35432 -32.45197 -30.93427 -30.03399 -27.74501 -26.36275 -24.15189 -22.76118 -22.48489 -20.94709 -19.31371 -18.10508 -17.26597 -16.45264 -16.38435 -15.76637 -15.58829 -15.17722 -14.67627 -14.42169 -14.19994 -13.74844 -13.30008 -12.88786 -12.80278 -12.42553 -12.08438 -12.01261 -11.60918 -11.31696 -11.20432 -10.96923 -10.82852 -10.70493 -10.53674 -10.45947 -10.29839 -9.58801 -9.41647 -9.11243 -8.75345 -8.30512 -7.86080 -5.94630 -3.93891 1.53106 1.62430 3.11547 3.26908 3.37708 3.43229 3.46229 3.83134 3.97658 4.52349 4.83426 4.97837 5.00418 5.05987 5.12998 5.30063 5.42953 5.46489 5.57571 5.67393 5.76052 5.81873 5.93733 6.15701 6.35188 6.40925 6.45100 6.54011 6.72281 6.91664 6.93277 7.19023 7.45994 7.55888 7.70944 7.99932 8.39080 8.76255 9.05638 9.67729 11.17256 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.004386 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.892973 B = 6381.784570 C = 6582.837391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.114 3.886 4 C -0.156 4.156 5 C -0.075 4.075 6 C -0.108 4.108 7 C -0.072 4.072 8 C -0.064 4.064 9 H 0.095 0.905 10 C 0.034 3.966 11 C -0.502 4.502 12 H 0.050 0.950 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.473 3.527 20 O -0.487 6.487 21 O -0.522 6.522 22 C -0.040 4.040 23 C -0.210 4.210 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.388 0.612 35 H 0.118 0.882 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -15.853 6.087 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.070 3.930 4 C -0.175 4.175 5 C -0.093 4.093 6 C -0.108 4.108 7 C -0.109 4.109 8 C -0.083 4.083 9 H 0.113 0.887 10 C -0.003 4.003 11 C -0.541 4.541 12 H 0.068 0.932 13 C -0.142 4.142 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C 0.314 3.686 20 O -0.372 6.372 21 O -0.333 6.333 22 C -0.058 4.058 23 C -0.229 4.229 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.128 -15.642 6.195 19.637 hybrid contribution -0.658 0.655 -1.445 1.718 sum -10.786 -14.986 4.750 19.065 Atomic orbital electron populations 1.22980 0.78891 1.03432 1.01258 1.86030 1.20999 1.27470 1.89194 1.18977 0.92367 0.83840 0.97846 1.20310 0.91224 0.98429 1.07512 1.20859 0.99856 0.90932 0.97675 1.19854 0.93640 0.95308 1.02035 1.20634 1.01151 0.92708 0.96411 1.21421 0.89942 1.03662 0.93325 0.88686 1.19143 0.94137 0.88769 0.98270 1.21006 1.33036 1.08107 0.91912 0.93163 1.24904 0.96085 0.96340 0.96889 1.69946 1.38405 1.14856 1.30588 0.86606 0.77572 0.78577 0.85313 1.20745 1.21290 1.20023 1.23830 0.86099 0.81636 0.77024 1.90732 1.76464 1.25915 1.44042 1.84831 1.30190 1.43978 1.74330 1.20661 0.93949 0.96465 0.94770 1.21081 0.99433 0.92396 1.09943 0.92897 0.92771 0.88676 0.85749 0.85361 0.89621 0.91050 0.95381 0.94932 0.93084 0.75604 0.86413 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.88 10.50 -19.41 -0.20 -4.09 16 3 C 0.11 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.16 -2.04 9.99 -39.43 -0.39 -2.43 16 5 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 6 C -0.11 -1.55 4.54 -104.60 -0.47 -2.03 16 7 C -0.07 -1.13 4.83 -27.88 -0.13 -1.27 16 8 C -0.06 -1.27 2.27 -91.77 -0.21 -1.48 16 9 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 10 C 0.03 0.85 4.10 -27.89 -0.11 0.73 16 11 C -0.50 -14.30 7.75 -34.44 -0.27 -14.57 16 12 H 0.05 1.43 7.61 -52.48 -0.40 1.03 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.47 9.39 7.18 36.01 0.26 9.65 16 20 O -0.49 -11.78 15.74 -18.75 -0.30 -12.07 16 21 O -0.52 -7.99 9.32 -39.24 -0.37 -8.36 16 22 C -0.04 -0.54 6.88 -39.60 -0.27 -0.81 16 23 C -0.21 -2.58 9.04 -39.43 -0.36 -2.94 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 28 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 29 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 30 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.03 0.77 7.96 -51.93 -0.41 0.36 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.39 4.41 9.10 45.56 0.41 4.82 16 35 H 0.12 1.50 7.60 -52.49 -0.40 1.11 16 36 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -34.03 306.84 -6.25 -40.28 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.01 Total: 1.11 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.72 Total: -12.47 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.86 Total: -24.51 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.03 -6.25 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691815703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.863 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds