Wall clock time and date at job start Mon Mar 30 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99994 * 2 1 4 4 C 1.38736 * 120.05678 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94518 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05837 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94758 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47263 * 89.99612 * 7 6 5 9 9 H 1.09000 * 109.46861 * 305.00416 * 8 7 6 10 10 C 1.52996 * 109.47228 * 185.00098 * 8 7 6 11 11 C 1.50698 * 109.47407 * 175.00434 * 10 8 7 12 12 H 1.08004 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00293 * 180.02562 * 11 10 8 14 14 N 1.31522 * 120.00035 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00178 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46827 * 90.00042 * 15 13 11 17 17 H 1.48500 * 109.47026 * 209.99497 * 15 13 11 18 18 H 1.48494 * 109.47181 * 329.99930 * 15 13 11 19 19 C 1.50706 * 109.46927 * 65.00039 * 8 7 6 20 20 O 1.20825 * 119.99859 * 119.99464 * 19 8 7 21 21 O 1.34224 * 120.00295 * 300.00423 * 19 8 7 22 22 C 1.38268 * 120.10694 * 0.27530 * 6 5 4 23 23 C 1.38145 * 120.05848 * 359.45024 * 22 6 5 24 24 H 1.09003 * 109.47112 * 299.99772 * 1 2 3 25 25 H 1.08995 * 109.47236 * 60.00101 * 1 2 3 26 26 H 1.09001 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02593 * 359.94932 * 4 3 2 28 28 H 1.08003 * 119.97113 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.46633 * 330.00054 * 7 6 5 30 30 H 1.08997 * 109.47180 * 210.00016 * 7 6 5 31 31 H 1.08999 * 109.47181 * 295.00552 * 10 8 7 32 32 H 1.08999 * 109.47126 * 54.99932 * 10 8 7 33 33 H 0.97002 * 119.99863 * 180.02562 * 14 13 11 34 34 H 0.96700 * 117.00196 * 179.97438 * 21 19 8 35 35 H 1.08001 * 119.96802 * 179.70826 * 22 6 5 36 36 H 1.08001 * 120.02958 * 180.27605 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 6 4.2172 5.4719 -1.4456 9 1 4.7698 4.7020 -1.9843 10 6 5.0215 6.7734 -1.4486 11 6 5.3545 7.1550 -2.8680 12 1 5.0257 6.5312 -3.6861 13 6 6.0797 8.2996 -3.1221 14 7 6.4805 9.0589 -2.1258 15 14 6.4931 8.7722 -4.8815 16 1 5.4138 9.6324 -5.4295 17 1 7.7785 9.5154 -4.9054 18 1 6.6155 7.5446 -5.7080 19 6 2.8886 5.7008 -2.1192 20 8 2.6133 6.7929 -2.5566 21 8 2.0111 4.6915 -2.2330 22 6 1.9211 3.6047 0.0041 23 6 1.2915 2.3750 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3799 -0.0001 28 1 5.1345 2.5750 -0.0011 29 1 4.9442 4.9385 0.5108 30 1 3.3583 5.7466 0.5108 31 1 4.4317 7.5660 -0.9882 32 1 5.9434 6.6321 -0.8845 33 1 6.9904 9.8645 -2.3046 34 1 1.1721 4.8867 -2.6723 35 1 1.3343 4.5113 0.0085 36 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691815703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:54 Heat of formation + Delta-G solvation = -136.976861 kcal Electronic energy + Delta-G solvation = -19782.154697 eV Core-core repulsion = 16616.415550 eV Total energy + Delta-G solvation = -3165.739147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41657 -40.73474 -38.57959 -37.03981 -35.98760 -34.36916 -31.92643 -31.43427 -28.83386 -27.75918 -25.53571 -24.65315 -23.46127 -22.10081 -20.86542 -18.99992 -18.80187 -18.53055 -17.65417 -16.79150 -16.62162 -16.54890 -16.36708 -15.99255 -15.25884 -14.71151 -14.38098 -14.32367 -14.20614 -14.12538 -13.43046 -13.14571 -13.06446 -12.82173 -12.66894 -12.56221 -12.30854 -12.25100 -12.19695 -11.72169 -11.59464 -11.41719 -11.14571 -11.07970 -10.52721 -9.74872 -8.88868 -8.15969 -6.21677 0.54144 0.60111 1.37415 1.40049 1.49137 1.53131 2.40664 2.43151 2.48808 2.93490 3.19087 3.90096 3.95915 4.09009 4.24575 4.28829 4.41962 4.43281 4.45301 4.59096 4.64624 4.76191 4.83749 4.94631 5.02519 5.12361 5.25113 5.42547 5.45092 5.53299 5.63576 5.76605 5.86038 5.87482 5.95432 6.23077 6.57099 6.86839 7.30060 7.43729 8.96016 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.004386 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.892973 B = 6381.784570 C = 6582.837391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.166 4.166 5 C -0.078 4.078 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.060 4.060 9 H 0.101 0.899 10 C 0.040 3.960 11 C -0.515 4.515 12 H 0.045 0.955 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.953 3.047 16 H -0.283 1.283 17 H -0.277 1.277 18 H -0.264 1.264 19 C 0.485 3.515 20 O -0.538 6.538 21 O -0.500 6.500 22 C -0.046 4.046 23 C -0.208 4.208 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.094 0.906 30 H 0.068 0.932 31 H -0.005 1.005 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.410 0.590 35 H 0.122 0.878 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -17.704 5.650 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.096 4.096 6 C -0.124 4.124 7 C -0.098 4.098 8 C -0.079 4.079 9 H 0.119 0.881 10 C 0.003 3.997 11 C -0.553 4.553 12 H 0.064 0.936 13 C -0.196 4.196 14 N -0.573 5.573 15 Si 0.779 3.221 16 H -0.209 1.209 17 H -0.202 1.202 18 H -0.189 1.189 19 C 0.328 3.672 20 O -0.427 6.427 21 O -0.313 6.313 22 C -0.064 4.064 23 C -0.227 4.227 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.013 0.987 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.270 0.730 35 H 0.140 0.860 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.166 -17.542 5.759 21.577 hybrid contribution -0.458 1.099 -1.269 1.740 sum -11.624 -16.443 4.489 20.631 Atomic orbital electron populations 1.23290 0.76793 1.05308 1.02080 1.86021 1.23212 1.26992 1.88930 1.19175 0.92633 0.84527 0.97146 1.20530 0.91767 0.98747 1.07452 1.21012 1.00544 0.90800 0.97275 1.19724 0.94163 0.94473 1.04033 1.20485 1.01977 0.93747 0.93565 1.21197 0.89643 1.00792 0.96251 0.88077 1.18935 0.93958 0.90622 0.96212 1.21380 1.32512 1.08121 0.93297 0.93634 1.25763 0.96250 0.96525 1.01018 1.70058 1.39274 1.15366 1.32630 0.85625 0.77472 0.78533 0.80489 1.20911 1.20219 1.18863 1.23685 0.86421 0.81321 0.75752 1.90722 1.77642 1.27990 1.46348 1.84761 1.30837 1.41738 1.73931 1.20766 0.93657 0.97189 0.94821 1.21289 1.00673 0.91632 1.09091 0.91868 0.92055 0.86470 0.84555 0.84262 0.88725 0.91289 0.98660 0.95995 0.92936 0.73036 0.86047 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.25 10.50 -92.35 -0.97 -8.22 16 3 C 0.11 2.61 6.69 22.51 0.15 2.76 16 4 C -0.17 -4.01 9.99 22.37 0.22 -3.79 16 5 C -0.08 -1.97 9.69 22.25 0.22 -1.75 16 6 C -0.12 -3.36 4.54 -19.85 -0.09 -3.45 16 7 C -0.06 -1.88 4.83 29.85 0.14 -1.73 16 8 C -0.06 -2.35 2.27 -11.54 -0.03 -2.38 16 9 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 10 C 0.04 2.05 4.10 29.85 0.12 2.17 16 11 C -0.51 -29.79 7.75 25.60 0.20 -29.59 16 12 H 0.05 2.61 7.61 -2.91 -0.02 2.59 16 13 C 0.00 0.09 5.46 84.65 0.46 0.56 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 15 Si 0.95 46.22 29.54 68.60 2.03 48.24 16 16 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 19 C 0.49 19.04 7.18 71.24 0.51 19.55 16 20 O -0.54 -26.31 15.74 21.97 0.35 -25.97 16 21 O -0.50 -14.32 9.32 -51.35 -0.48 -14.80 16 22 C -0.05 -1.14 6.88 22.25 0.15 -0.99 16 23 C -0.21 -4.57 9.04 22.37 0.20 -4.37 16 24 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 25 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 26 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.09 2.73 8.08 -2.38 -0.02 2.71 16 30 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 31 H -0.01 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.41 8.26 9.10 -74.06 -0.67 7.59 16 35 H 0.12 2.87 7.60 -2.91 -0.02 2.84 16 36 H 0.14 2.38 6.30 -2.91 -0.02 2.37 16 Total: -1.00 -73.72 306.84 5.00 -68.72 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.41 Total: 10.85 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 3.38 Total: -21.66 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -1.10 Total: -48.98 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -73.72 5.00 -68.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691815703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.258 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds