Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 116.99858 * 2 1 4 4 C 1.38751 * 120.05522 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94419 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05618 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11065 * 0.02562 * 6 5 4 8 8 C 1.38173 * 120.05548 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02714 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46966 * 95.77267 * 9 8 7 11 11 H 1.08990 * 109.47072 * 54.32888 * 10 9 8 12 12 C 1.52997 * 109.46940 * 174.33333 * 10 9 8 13 13 C 1.50705 * 109.46810 * 185.00153 * 12 10 9 14 14 H 1.07995 * 119.99749 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99975 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99955 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46666 * 60.00066 * 17 15 13 19 19 H 1.48496 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46954 * 300.00185 * 17 15 13 21 21 C 1.50697 * 109.46889 * 294.32919 * 10 9 8 22 22 O 1.20822 * 120.00434 * 297.82632 * 21 10 9 23 23 O 1.34231 * 119.99669 * 117.82379 * 21 10 9 24 24 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47615 * 300.00310 * 1 2 3 26 26 H 1.08998 * 109.47028 * 60.00590 * 1 2 3 27 27 H 1.07999 * 120.03126 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.97376 * 179.72243 * 5 4 3 29 29 H 1.07991 * 119.94534 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97511 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47259 * 215.77042 * 9 8 7 32 32 H 1.09001 * 109.47715 * 335.77280 * 9 8 7 33 33 H 1.09002 * 109.46918 * 304.99823 * 12 10 9 34 34 H 1.08991 * 109.47596 * 64.99746 * 12 10 9 35 35 H 0.96995 * 119.99907 * 180.02562 * 16 15 13 36 36 H 0.96703 * 116.99617 * 179.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 0.0005 10 6 4.4111 -0.4840 1.4359 11 1 3.4274 -0.5951 1.8918 12 6 5.1237 -1.8378 1.4239 13 6 5.1696 -2.3936 2.8240 14 1 4.7344 -1.8367 3.6405 15 6 5.7671 -3.6131 3.0623 16 7 6.2967 -4.2915 2.0678 17 14 5.8247 -4.3017 4.7978 18 1 4.4407 -4.4745 5.3078 19 1 6.5151 -5.6163 4.7860 20 1 6.5632 -3.3619 5.6790 21 6 5.2244 0.5048 2.2308 22 8 6.3657 0.7422 1.9132 23 8 4.6808 1.1218 3.2917 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2128 2.3203 -0.0014 28 1 1.3339 4.5113 -0.0060 29 1 3.7921 4.6380 -0.0014 30 1 5.1344 2.5752 0.0008 31 1 3.7532 -0.7376 -0.5998 32 1 5.2371 0.2291 -0.4216 33 1 4.5822 -2.5277 0.7767 34 1 6.1395 -1.7104 1.0501 35 1 6.7167 -5.1495 2.2354 36 1 5.2415 1.7474 3.7706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691816152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -122.920608 kcal Electronic energy + Delta-G solvation = -20134.632816 eV Core-core repulsion = 16969.503194 eV Total energy + Delta-G solvation = -3165.129622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29138 -39.35904 -37.29264 -35.53136 -34.54731 -32.73345 -30.67797 -29.97853 -27.45358 -26.71331 -24.44656 -22.75436 -22.02815 -21.23446 -19.22505 -17.86760 -17.45330 -16.37236 -16.21376 -15.72836 -15.46344 -15.42015 -14.86561 -14.42393 -14.28832 -13.64303 -13.18276 -12.92113 -12.72077 -12.30738 -12.00849 -11.80949 -11.74437 -11.34680 -11.12304 -11.06223 -10.89244 -10.79508 -10.67441 -10.47286 -10.33054 -9.56802 -9.44265 -9.18573 -8.70124 -8.36572 -7.99402 -6.01026 -4.04193 1.40880 1.54402 3.15044 3.34937 3.38473 3.39533 3.41608 3.84048 3.94102 4.45971 4.81639 4.89955 5.10047 5.12547 5.17005 5.35848 5.40477 5.45886 5.51711 5.73865 5.79051 5.85410 5.96910 6.18050 6.30270 6.41709 6.55811 6.59923 6.70215 6.77531 6.92393 7.24070 7.51261 7.57888 7.71663 7.95193 8.32634 8.76253 9.00292 9.59864 11.10024 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.005816 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.126574 B = 4812.989580 C = 5356.964737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.134 3.866 4 C -0.210 4.210 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.081 4.081 8 C -0.109 4.109 9 C -0.065 4.065 10 C -0.062 4.062 11 H 0.088 0.912 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.503 3.497 22 O -0.527 6.527 23 O -0.521 6.521 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 13.541 -4.619 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.089 3.911 4 C -0.229 4.229 5 C -0.108 4.108 6 C -0.175 4.175 7 C -0.099 4.099 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.082 4.082 11 H 0.106 0.894 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.203 1.203 21 C 0.347 3.653 22 O -0.416 6.416 23 O -0.332 6.332 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.792 12.942 -4.974 17.570 hybrid contribution 0.171 0.169 1.388 1.408 sum -10.620 13.112 -3.587 17.250 Atomic orbital electron populations 1.23044 0.78833 1.03995 1.00867 1.86173 1.20892 1.26466 1.88281 1.18858 0.91764 0.84302 0.96180 1.21172 0.99744 0.92430 1.09523 1.20844 0.94607 0.96736 0.98624 1.20985 0.93888 0.98164 1.04488 1.21006 1.00100 0.91163 0.97595 1.19489 0.90782 0.96327 1.04371 1.20554 0.99412 0.93814 0.96445 1.21217 1.00160 0.95103 0.91715 0.89363 1.19187 0.96085 0.87036 0.98093 1.21174 1.37677 1.04333 0.93460 0.92588 1.24964 0.95121 0.96878 0.97030 1.69946 1.37840 1.14207 1.30986 0.86643 0.78281 0.78177 0.84863 1.20110 1.21183 1.20271 1.23660 0.86187 0.77982 0.77466 1.90593 1.19467 1.62707 1.68821 1.84636 1.49461 1.56179 1.42876 0.88156 0.92804 0.93042 0.85718 0.86224 0.86215 0.85452 0.89053 0.90246 0.94544 0.95034 0.92814 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.59 9.65 -19.41 -0.19 -4.77 16 3 C 0.13 2.04 6.66 -39.22 -0.26 1.78 16 4 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 5 C -0.09 -1.05 10.04 -39.60 -0.40 -1.45 16 6 C -0.16 -1.97 10.04 -39.56 -0.40 -2.37 16 7 C -0.08 -1.20 9.17 -39.60 -0.36 -1.56 16 8 C -0.11 -1.78 4.76 -104.47 -0.50 -2.28 16 9 C -0.06 -1.19 4.50 -27.88 -0.13 -1.32 16 10 C -0.06 -1.35 2.19 -91.77 -0.20 -1.55 16 11 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 12 C 0.03 0.86 4.40 -27.88 -0.12 0.74 16 13 C -0.53 -15.13 8.60 -34.44 -0.30 -15.43 16 14 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.50 10.86 5.50 36.00 0.20 11.05 16 22 O -0.53 -12.45 17.34 -18.75 -0.33 -12.77 16 23 O -0.52 -9.68 13.42 -39.26 -0.53 -10.20 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 32 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.90 7.93 -51.93 -0.41 0.48 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.39 5.37 9.10 45.56 0.41 5.78 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -33.90 313.51 -6.53 -40.43 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.01 Total: 4.14 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.93 Total: -12.41 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.04 Total: -27.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.90 -6.53 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691816152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.492 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds