Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 116.99858 * 2 1 4 4 C 1.38751 * 120.05522 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94419 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05618 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11065 * 0.02562 * 6 5 4 8 8 C 1.38173 * 120.05548 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02714 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46966 * 95.77267 * 9 8 7 11 11 H 1.08990 * 109.47072 * 54.32888 * 10 9 8 12 12 C 1.52997 * 109.46940 * 174.33333 * 10 9 8 13 13 C 1.50705 * 109.46810 * 185.00153 * 12 10 9 14 14 H 1.07995 * 119.99749 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99975 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99955 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46666 * 60.00066 * 17 15 13 19 19 H 1.48496 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46954 * 300.00185 * 17 15 13 21 21 C 1.50697 * 109.46889 * 294.32919 * 10 9 8 22 22 O 1.20822 * 120.00434 * 297.82632 * 21 10 9 23 23 O 1.34231 * 119.99669 * 117.82379 * 21 10 9 24 24 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47615 * 300.00310 * 1 2 3 26 26 H 1.08998 * 109.47028 * 60.00590 * 1 2 3 27 27 H 1.07999 * 120.03126 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.97376 * 179.72243 * 5 4 3 29 29 H 1.07991 * 119.94534 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97511 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47259 * 215.77042 * 9 8 7 32 32 H 1.09001 * 109.47715 * 335.77280 * 9 8 7 33 33 H 1.09002 * 109.46918 * 304.99823 * 12 10 9 34 34 H 1.08991 * 109.47596 * 64.99746 * 12 10 9 35 35 H 0.96995 * 119.99907 * 180.02562 * 16 15 13 36 36 H 0.96703 * 116.99617 * 179.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 0.0005 10 6 4.4111 -0.4840 1.4359 11 1 3.4274 -0.5951 1.8918 12 6 5.1237 -1.8378 1.4239 13 6 5.1696 -2.3936 2.8240 14 1 4.7344 -1.8367 3.6405 15 6 5.7671 -3.6131 3.0623 16 7 6.2967 -4.2915 2.0678 17 14 5.8247 -4.3017 4.7978 18 1 4.4407 -4.4745 5.3078 19 1 6.5151 -5.6163 4.7860 20 1 6.5632 -3.3619 5.6790 21 6 5.2244 0.5048 2.2308 22 8 6.3657 0.7422 1.9132 23 8 4.6808 1.1218 3.2917 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2128 2.3203 -0.0014 28 1 1.3339 4.5113 -0.0060 29 1 3.7921 4.6380 -0.0014 30 1 5.1344 2.5752 0.0008 31 1 3.7532 -0.7376 -0.5998 32 1 5.2371 0.2291 -0.4216 33 1 4.5822 -2.5277 0.7767 34 1 6.1395 -1.7104 1.0501 35 1 6.7167 -5.1495 2.2354 36 1 5.2415 1.7474 3.7706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691816152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -144.645021 kcal Electronic energy + Delta-G solvation = -20135.574857 eV Core-core repulsion = 16969.503194 eV Total energy + Delta-G solvation = -3166.071664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.57825 -40.81624 -38.32830 -37.15820 -36.30351 -34.64894 -32.21093 -31.00083 -28.83958 -27.97313 -26.05084 -24.72406 -23.03054 -22.48060 -20.90586 -19.15274 -18.91325 -18.45340 -17.62244 -16.94285 -16.80421 -16.51807 -16.45986 -16.24650 -15.34656 -14.71521 -14.67493 -14.40481 -14.23716 -13.89942 -13.49812 -13.27272 -13.15096 -12.84255 -12.68899 -12.55688 -12.43622 -12.27106 -12.19602 -11.94160 -11.88485 -11.46790 -11.24774 -11.20747 -10.59552 -9.78980 -9.05413 -8.22944 -6.35025 0.36437 0.52218 1.37796 1.39305 1.43647 1.49158 2.33582 2.38529 2.47032 2.82199 3.10959 3.73799 3.88996 4.07230 4.21025 4.28911 4.30432 4.39625 4.45946 4.51296 4.54509 4.70567 4.78905 4.83928 4.88576 4.98948 5.14699 5.33524 5.41335 5.50345 5.56497 5.62690 5.66722 5.77308 5.91634 6.11617 6.54174 6.77508 7.16509 7.33755 8.88555 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.005816 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.126574 B = 4812.989580 C = 5356.964737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.157 4.157 7 C -0.093 4.093 8 C -0.138 4.138 9 C -0.054 4.054 10 C -0.054 4.054 11 H 0.086 0.914 12 C 0.041 3.959 13 C -0.548 4.548 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.272 1.272 21 C 0.509 3.491 22 O -0.553 6.553 23 O -0.513 6.513 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.019 0.981 34 H -0.003 1.003 35 H 0.266 0.734 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 15.343 -3.498 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.111 4.111 8 C -0.139 4.139 9 C -0.091 4.091 10 C -0.074 4.074 11 H 0.104 0.896 12 C 0.004 3.996 13 C -0.586 4.586 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.786 3.214 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.197 1.197 21 C 0.354 3.646 22 O -0.444 6.444 23 O -0.326 6.326 24 H 0.128 0.872 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.164 0.836 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.075 0.925 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -12.742 14.769 -3.838 19.880 hybrid contribution 0.708 -0.326 1.021 1.285 sum -12.034 14.443 -2.817 19.009 Atomic orbital electron populations 1.23335 0.76581 1.05283 1.02384 1.86129 1.23400 1.27027 1.88418 1.19026 0.91511 0.85327 0.96597 1.21530 1.01137 0.91727 1.08233 1.21320 0.94466 0.97824 0.96211 1.21304 0.94526 0.98257 1.03404 1.21042 0.99965 0.91704 0.98403 1.19342 0.91510 0.95488 1.07543 1.20334 0.99441 0.95318 0.94052 1.20985 0.99055 0.93222 0.94133 0.89567 1.18956 0.94400 0.89445 0.96805 1.21532 1.37856 1.04857 0.94356 0.92433 1.25913 0.94531 0.97219 1.01581 1.70076 1.38496 1.14667 1.33375 0.85542 0.78966 0.77544 0.79302 1.18652 1.20399 1.19717 1.23471 0.85535 0.77841 0.77776 1.90580 1.20477 1.63682 1.69694 1.84558 1.49694 1.56447 1.41868 0.87205 0.91621 0.91017 0.82878 0.82449 0.83618 0.86452 0.89560 0.91344 0.96251 0.98428 0.92543 0.72330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.97 9.65 -92.37 -0.89 -10.86 16 3 C 0.12 3.54 6.66 22.51 0.15 3.69 16 4 C -0.21 -4.59 9.04 22.37 0.20 -4.39 16 5 C -0.08 -1.57 10.04 22.26 0.22 -1.34 16 6 C -0.16 -3.52 10.04 22.28 0.22 -3.29 16 7 C -0.09 -2.72 9.17 22.26 0.20 -2.51 16 8 C -0.14 -4.55 4.76 -19.77 -0.09 -4.65 16 9 C -0.05 -2.09 4.50 29.85 0.13 -1.96 16 10 C -0.05 -2.44 2.19 -11.54 -0.03 -2.47 16 11 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 12 C 0.04 2.26 4.40 29.85 0.13 2.39 16 13 C -0.55 -32.09 8.60 25.60 0.22 -31.87 16 14 H 0.06 3.27 7.61 -2.91 -0.02 3.25 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 17 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 C 0.51 22.27 5.50 71.24 0.39 22.66 16 22 O -0.55 -26.76 17.34 21.98 0.38 -26.37 16 23 O -0.51 -18.54 13.42 -51.43 -0.69 -19.23 16 24 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 26 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 27 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.15 2.45 8.06 -2.92 -0.02 2.42 16 30 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.09 3.31 7.72 -2.39 -0.02 3.29 16 32 H 0.07 2.71 7.90 -2.39 -0.02 2.69 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.00 -0.16 7.93 -2.39 -0.02 -0.18 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.42 10.66 9.10 -74.06 -0.67 9.99 16 Total: -1.00 -74.60 313.51 4.86 -69.74 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.41 Total: 17.89 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.34 Total: -21.45 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -1.20 Total: -56.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.60 4.86 -69.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691816152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.901 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds