Wall clock time and date at job start Mon Mar 30 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35896 * 117.00206 * 2 1 4 4 C 1.38750 * 120.05389 * 0.02883 * 3 2 1 5 5 C 1.38123 * 119.94429 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05845 * 0.02562 * 5 4 3 7 7 C 1.38252 * 120.11129 * 359.74602 * 6 5 4 8 8 C 1.38173 * 120.04965 * 0.50290 * 7 6 5 9 9 C 1.50698 * 120.02306 * 179.77111 * 8 7 6 10 10 C 1.53006 * 109.47184 * 264.72390 * 9 8 7 11 11 H 1.08997 * 109.47395 * 305.00741 * 10 9 8 12 12 C 1.52999 * 109.47054 * 185.00283 * 10 9 8 13 13 C 1.50698 * 109.47067 * 175.00191 * 12 10 9 14 14 H 1.08005 * 119.99588 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00433 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99784 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00575 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46774 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47311 * 119.99800 * 17 15 13 20 20 H 1.48498 * 109.47251 * 240.00430 * 17 15 13 21 21 C 1.50699 * 109.46610 * 65.00465 * 10 9 8 22 22 O 1.20825 * 120.00611 * 359.97438 * 21 10 9 23 23 O 1.34233 * 119.99577 * 180.02562 * 21 10 9 24 24 H 1.09009 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47553 * 299.99450 * 1 2 3 26 26 H 1.08998 * 109.47280 * 59.99402 * 1 2 3 27 27 H 1.08001 * 120.03043 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.97060 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.94840 * 179.97438 * 6 5 4 30 30 H 1.07996 * 119.97593 * 180.25888 * 7 6 5 31 31 H 1.09001 * 109.46665 * 144.72779 * 9 8 7 32 32 H 1.08993 * 109.47304 * 24.72335 * 9 8 7 33 33 H 1.09003 * 109.47054 * 295.00296 * 12 10 9 34 34 H 1.08997 * 109.47369 * 55.00377 * 12 10 9 35 35 H 0.96993 * 120.00114 * 179.97438 * 16 15 13 36 36 H 0.96699 * 116.99980 * 180.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0560 2.5171 0.0047 8 6 3.4310 1.2847 -0.0010 9 6 4.2537 0.0221 -0.0017 10 6 4.4261 -0.4736 -1.4389 11 1 3.4467 -0.5926 -1.9022 12 6 5.1534 -1.8196 -1.4304 13 6 5.2147 -2.3663 -2.8334 14 1 4.7789 -1.8091 -3.6495 15 6 5.8280 -3.5772 -3.0753 16 7 6.3591 -4.2554 -2.0815 17 14 5.9046 -4.2546 -4.8144 18 1 5.2394 -3.3070 -5.7444 19 1 7.3237 -4.4276 -5.2162 20 1 5.2121 -5.5672 -4.8654 21 6 5.2338 0.5289 -2.2224 22 8 5.6304 1.5365 -1.6865 23 8 5.5117 0.3027 -3.5160 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2127 2.3203 0.0007 28 1 1.3339 4.5113 0.0012 29 1 3.7922 4.6380 0.0005 30 1 5.1344 2.5751 0.0084 31 1 3.7469 -0.7420 0.5878 32 1 5.2326 0.2260 0.4321 33 1 6.1653 -1.6834 -1.0490 34 1 4.6152 -2.5193 -0.7910 35 1 6.7902 -5.1075 -2.2515 36 1 6.0331 0.9742 -3.9769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691816156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:58 Heat of formation + Delta-G solvation = -115.567834 kcal Electronic energy + Delta-G solvation = -20203.302515 eV Core-core repulsion = 17038.491732 eV Total energy + Delta-G solvation = -3164.810782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24279 -39.31520 -37.17568 -35.40951 -34.59726 -32.57865 -30.63770 -29.83309 -27.37680 -26.60696 -24.36206 -22.56624 -21.89007 -21.14722 -19.36344 -17.87465 -17.33198 -16.39231 -16.10478 -15.66976 -15.44973 -15.28379 -14.74059 -14.23773 -14.13437 -13.50292 -13.04210 -12.89790 -12.62542 -12.21826 -11.91381 -11.76454 -11.70996 -11.31012 -10.99728 -10.95074 -10.81610 -10.71292 -10.65302 -10.48627 -10.19339 -9.60256 -9.30047 -9.07215 -8.46585 -8.33732 -7.88543 -5.96994 -3.97262 1.58706 1.69242 3.10439 3.34407 3.42059 3.47708 3.47728 3.99540 4.03512 4.50450 4.92544 5.03639 5.16596 5.20389 5.30847 5.39323 5.51277 5.57772 5.61355 5.73498 5.93761 5.94381 6.16344 6.33771 6.37807 6.53858 6.61935 6.69517 6.72732 6.92073 7.10129 7.35330 7.59959 7.61841 7.63031 8.02878 8.37847 8.80805 9.10843 9.66206 11.14676 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.005799 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.223187 B = 4827.367273 C = 5403.535191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.127 3.873 4 C -0.220 4.220 5 C -0.091 4.091 6 C -0.169 4.169 7 C -0.047 4.047 8 C -0.112 4.112 9 C -0.058 4.058 10 C -0.069 4.069 11 H 0.096 0.904 12 C 0.031 3.969 13 C -0.510 4.510 14 H 0.071 0.929 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.498 3.502 22 O -0.544 6.544 23 O -0.489 6.489 24 H 0.099 0.901 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 12.252 3.879 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.082 3.918 4 C -0.239 4.239 5 C -0.109 4.109 6 C -0.187 4.187 7 C -0.065 4.065 8 C -0.112 4.112 9 C -0.095 4.095 10 C -0.088 4.088 11 H 0.114 0.886 12 C -0.006 4.006 13 C -0.548 4.548 14 H 0.089 0.911 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.212 1.212 21 C 0.344 3.656 22 O -0.436 6.436 23 O -0.297 6.297 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.496 11.841 4.257 15.764 hybrid contribution 0.144 0.193 -1.319 1.341 sum -9.352 12.033 2.938 15.521 Atomic orbital electron populations 1.23011 0.79055 1.03800 1.00798 1.86154 1.20723 1.26696 1.88509 1.18937 0.91932 0.84136 0.96792 1.21095 0.99500 0.92492 1.10768 1.20830 0.94726 0.96568 0.98807 1.21056 0.93762 0.98464 1.05420 1.21266 1.00965 0.90447 0.93796 1.19424 0.90163 0.96612 1.05033 1.20428 0.99251 0.93606 0.96240 1.21255 0.99596 0.95878 0.92050 0.88615 1.19166 0.95246 0.87640 0.98575 1.21368 1.36146 1.04028 0.93273 0.91096 1.24989 0.95593 0.97037 0.96877 1.69977 1.38406 1.14665 1.30849 0.86522 0.77560 0.78743 0.85090 1.19617 1.21248 1.21234 1.23746 0.76817 0.84933 0.80118 1.90529 1.52816 1.29647 1.70621 1.84891 1.68166 1.51408 1.25243 0.88290 0.93107 0.92978 0.86033 0.86568 0.86506 0.83947 0.89668 0.90639 0.96103 0.94680 0.93143 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.77 9.63 -19.41 -0.19 -4.96 16 3 C 0.13 2.03 6.66 -39.22 -0.26 1.77 16 4 C -0.22 -2.99 9.04 -39.43 -0.36 -3.34 16 5 C -0.09 -1.18 10.04 -39.61 -0.40 -1.58 16 6 C -0.17 -2.37 10.04 -39.56 -0.40 -2.77 16 7 C -0.05 -0.76 7.86 -39.60 -0.31 -1.07 16 8 C -0.11 -1.92 4.75 -104.47 -0.50 -2.42 16 9 C -0.06 -1.07 4.29 -27.88 -0.12 -1.19 16 10 C -0.07 -1.44 2.27 -91.77 -0.21 -1.65 16 11 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 12 C 0.03 0.77 4.44 -27.88 -0.12 0.65 16 13 C -0.51 -13.97 8.05 -34.44 -0.28 -14.25 16 14 H 0.07 1.92 6.36 -52.48 -0.33 1.59 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.50 10.24 7.35 36.01 0.26 10.50 16 22 O -0.54 -11.03 12.78 -18.75 -0.24 -11.27 16 23 O -0.49 -9.56 11.02 -39.26 -0.43 -9.99 16 24 H 0.10 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 26 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 28 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.14 2.40 6.40 -52.49 -0.34 2.06 16 31 H 0.08 1.54 7.69 -51.93 -0.40 1.14 16 32 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.39 5.49 9.10 45.56 0.41 5.91 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -32.12 303.70 -6.22 -38.34 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.86 Total: 5.16 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.79 Total: -12.58 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.86 Total: -26.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.12 -6.22 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691816156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.224 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds