Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46804 * 2 1 4 4 C 1.53005 * 109.47430 * 240.00192 * 2 1 3 5 5 C 1.50702 * 109.47015 * 175.00075 * 4 2 1 6 6 H 1.08001 * 120.00216 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99826 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47031 * 89.99639 * 9 7 5 11 11 H 1.48493 * 109.47090 * 209.99768 * 9 7 5 12 12 H 1.48501 * 109.46825 * 330.00089 * 9 7 5 13 13 O 1.42897 * 109.47053 * 119.99834 * 2 1 3 14 14 C 1.35898 * 117.00531 * 275.18152 * 13 2 1 15 15 C 1.38754 * 120.04984 * 5.48537 * 14 13 2 16 16 C 1.38127 * 119.94198 * 180.02562 * 15 14 13 17 17 C 1.38287 * 120.05330 * 359.97438 * 16 15 14 18 18 C 1.38241 * 120.11358 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.97142 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47221 * 269.97995 * 19 18 17 21 21 O 1.20827 * 120.00353 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99759 * 179.97438 * 20 19 18 23 23 C 1.38161 * 120.05622 * 0.02562 * 18 17 16 24 24 H 1.09001 * 109.47117 * 60.00133 * 1 2 3 25 25 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47155 * 299.99949 * 1 2 3 27 27 H 1.09001 * 109.46856 * 295.00075 * 4 2 1 28 28 H 1.08999 * 109.46639 * 55.00013 * 4 2 1 29 29 H 0.96999 * 119.99924 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.03150 * 359.73895 * 15 14 13 31 31 H 1.08001 * 119.97311 * 179.97438 * 16 15 14 32 32 H 1.08005 * 119.94240 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.46932 * 29.98482 * 19 18 17 34 34 H 1.08999 * 109.46728 * 149.97974 * 19 18 17 35 35 H 0.96701 * 117.00003 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.03039 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1925 -2.3582 8 7 3.5765 -1.8368 -3.3001 9 14 6.0921 -1.0601 -2.4373 10 1 6.7009 -2.2126 -1.7259 11 1 6.5290 -1.0674 -3.8564 12 1 6.5261 0.2051 -1.7921 13 8 2.0063 -0.6736 1.1668 14 6 2.1089 0.0616 2.3051 15 6 1.6522 1.3716 2.3296 16 6 1.7581 2.1171 3.4877 17 6 2.3181 1.5586 4.6220 18 6 2.7728 0.2533 4.6004 19 6 3.3820 -0.3524 5.8387 20 6 4.8679 -0.1011 5.8419 21 8 5.3797 0.5078 4.9324 22 8 5.6227 -0.5528 6.8559 23 6 2.6692 -0.4965 3.4446 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2435 -4.0355 30 1 1.2187 1.8096 1.4428 31 1 1.4032 3.1369 3.5072 32 1 2.3996 2.1429 5.5267 33 1 2.9347 0.1016 6.7230 34 1 3.1951 -1.4262 5.8476 35 1 6.5708 -0.3669 6.8141 36 1 3.0242 -1.5164 3.4283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695791550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -118.840303 kcal Electronic energy + Delta-G solvation = -19457.665469 eV Core-core repulsion = 16292.712782 eV Total energy + Delta-G solvation = -3164.952687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47437 -39.62807 -37.45988 -36.12290 -33.51834 -32.66120 -31.69638 -29.47947 -28.05767 -27.34683 -23.48003 -22.91727 -22.13997 -21.27210 -19.47583 -18.17201 -17.51132 -16.54700 -16.34249 -16.18217 -15.76121 -15.26561 -14.48655 -14.45400 -14.16174 -13.41765 -13.24641 -13.09533 -12.59570 -12.41999 -12.09894 -11.88105 -11.78018 -11.57538 -11.46343 -11.23323 -11.07603 -10.72950 -10.69204 -10.61743 -10.37606 -9.97500 -9.36785 -9.09803 -8.66939 -8.36839 -7.71444 -6.00136 -4.01201 1.43464 1.76703 2.15614 3.00528 3.35374 3.40920 3.46551 3.88747 4.08788 4.48650 4.56568 4.88978 5.12754 5.24806 5.29771 5.34721 5.37213 5.49718 5.61670 5.72020 5.79285 5.83015 5.98871 6.20103 6.25257 6.39807 6.54567 6.58937 6.65910 6.70999 6.81884 7.03118 7.50738 7.60161 7.81450 7.96933 8.16736 8.38273 9.02750 9.62386 11.11258 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.005550 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.936165 B = 5044.163924 C = 6289.455524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.026 3.974 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 O -0.291 6.291 14 C 0.154 3.846 15 C -0.209 4.209 16 C -0.080 4.080 17 C -0.158 4.158 18 C -0.049 4.049 19 C -0.067 4.067 20 C 0.474 3.526 21 O -0.497 6.497 22 O -0.523 6.523 23 C -0.145 4.145 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.409 0.591 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 4.678 18.649 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 O -0.203 6.203 14 C 0.106 3.894 15 C -0.228 4.228 16 C -0.098 4.098 17 C -0.176 4.176 18 C -0.049 4.049 19 C -0.105 4.105 20 C 0.315 3.685 21 O -0.383 6.383 22 O -0.335 6.335 23 C -0.164 4.164 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.268 0.732 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.616 4.464 18.175 19.062 hybrid contribution 1.648 0.364 -0.283 1.711 sum -1.968 4.828 17.892 18.637 Atomic orbital electron populations 1.22414 0.96983 1.02608 1.01455 1.22884 0.91807 0.97176 0.85101 0.91939 1.19269 0.96599 0.96486 0.88758 1.21136 0.91697 1.34430 1.07896 0.92581 1.24966 0.98448 0.95247 0.95630 1.69954 1.35528 1.36070 1.12136 0.86588 0.85783 0.78660 0.77020 1.20615 1.21214 1.19832 1.86274 1.79794 1.38091 1.16135 1.19119 0.92463 0.90233 0.87568 1.21423 1.06809 0.94727 0.99836 1.20818 0.97666 0.99013 0.92318 1.20682 1.03465 0.94604 0.98833 1.18868 0.98688 0.94271 0.93108 1.20223 0.87258 1.04429 0.98565 1.23440 0.90594 0.75583 0.78865 1.90808 1.74392 1.37359 1.35755 1.84513 1.25890 1.74955 1.48165 1.20212 1.03977 1.01195 0.90978 0.91382 0.91910 0.93260 0.95286 0.94346 0.92969 0.85133 0.86156 0.86613 0.86764 0.86635 0.73207 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 2 C 0.09 1.81 2.17 -26.73 -0.06 1.75 16 3 H 0.06 1.30 6.32 -51.93 -0.33 0.97 16 4 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.51 -14.86 8.88 -34.44 -0.31 -15.17 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 O -0.29 -6.34 9.55 -19.42 -0.19 -6.52 16 14 C 0.15 2.89 6.60 -39.22 -0.26 2.63 16 15 C -0.21 -3.45 8.23 -39.43 -0.32 -3.78 16 16 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 17 C -0.16 -2.08 9.70 -39.56 -0.38 -2.47 16 18 C -0.05 -0.68 4.37 -104.64 -0.46 -1.14 16 19 C -0.07 -0.67 5.94 -29.03 -0.17 -0.84 16 20 C 0.47 5.66 8.32 36.00 0.30 5.96 16 21 O -0.50 -8.25 16.79 -18.75 -0.31 -8.57 16 22 O -0.52 -4.62 13.42 -39.26 -0.53 -5.14 16 23 C -0.14 -2.43 9.64 -39.44 -0.38 -2.81 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.74 6.90 -51.93 -0.36 0.38 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.13 2.05 5.43 -52.49 -0.28 1.77 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.11 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.12 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.41 2.11 9.10 45.56 0.41 2.52 16 36 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -34.77 313.83 -6.81 -41.58 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.90 Total: 0.74 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.33 Total: -17.92 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.03 Total: -20.23 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.77 -6.81 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.265 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds