Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46804 * 2 1 4 4 C 1.53005 * 109.47430 * 240.00192 * 2 1 3 5 5 C 1.50702 * 109.47015 * 175.00075 * 4 2 1 6 6 H 1.08001 * 120.00216 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99826 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47031 * 89.99639 * 9 7 5 11 11 H 1.48493 * 109.47090 * 209.99768 * 9 7 5 12 12 H 1.48501 * 109.46825 * 330.00089 * 9 7 5 13 13 O 1.42897 * 109.47053 * 119.99834 * 2 1 3 14 14 C 1.35898 * 117.00531 * 275.18152 * 13 2 1 15 15 C 1.38754 * 120.04984 * 5.48537 * 14 13 2 16 16 C 1.38127 * 119.94198 * 180.02562 * 15 14 13 17 17 C 1.38287 * 120.05330 * 359.97438 * 16 15 14 18 18 C 1.38241 * 120.11358 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.97142 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47221 * 269.97995 * 19 18 17 21 21 O 1.20827 * 120.00353 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99759 * 179.97438 * 20 19 18 23 23 C 1.38161 * 120.05622 * 0.02562 * 18 17 16 24 24 H 1.09001 * 109.47117 * 60.00133 * 1 2 3 25 25 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47155 * 299.99949 * 1 2 3 27 27 H 1.09001 * 109.46856 * 295.00075 * 4 2 1 28 28 H 1.08999 * 109.46639 * 55.00013 * 4 2 1 29 29 H 0.96999 * 119.99924 * 180.02562 * 8 7 5 30 30 H 1.07995 * 120.03150 * 359.73895 * 15 14 13 31 31 H 1.08001 * 119.97311 * 179.97438 * 16 15 14 32 32 H 1.08005 * 119.94240 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.46932 * 29.98482 * 19 18 17 34 34 H 1.08999 * 109.46728 * 149.97974 * 19 18 17 35 35 H 0.96701 * 117.00003 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.03039 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1925 -2.3582 8 7 3.5765 -1.8368 -3.3001 9 14 6.0921 -1.0601 -2.4373 10 1 6.7009 -2.2126 -1.7259 11 1 6.5290 -1.0674 -3.8564 12 1 6.5261 0.2051 -1.7921 13 8 2.0063 -0.6736 1.1668 14 6 2.1089 0.0616 2.3051 15 6 1.6522 1.3716 2.3296 16 6 1.7581 2.1171 3.4877 17 6 2.3181 1.5586 4.6220 18 6 2.7728 0.2533 4.6004 19 6 3.3820 -0.3524 5.8387 20 6 4.8679 -0.1011 5.8419 21 8 5.3797 0.5078 4.9324 22 8 5.6227 -0.5528 6.8559 23 6 2.6692 -0.4965 3.4446 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 4.0609 -2.2435 -4.0355 30 1 1.2187 1.8096 1.4428 31 1 1.4032 3.1369 3.5072 32 1 2.3996 2.1429 5.5267 33 1 2.9347 0.1016 6.7230 34 1 3.1951 -1.4262 5.8476 35 1 6.5708 -0.3669 6.8141 36 1 3.0242 -1.5164 3.4283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -141.694823 kcal Electronic energy + Delta-G solvation = -19458.656515 eV Core-core repulsion = 16292.712782 eV Total energy + Delta-G solvation = -3165.943733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49824 -40.86975 -38.74482 -37.02915 -35.50848 -33.72300 -33.50816 -30.74551 -29.53887 -28.82505 -25.37165 -24.10428 -23.40202 -22.51171 -20.87307 -19.07837 -18.86385 -18.52643 -17.42247 -17.24958 -17.01959 -16.62947 -16.28636 -15.97198 -15.31783 -14.84071 -14.39801 -14.31374 -14.00581 -13.79861 -13.59370 -13.41114 -13.23461 -13.00939 -12.71191 -12.68480 -12.50816 -12.37082 -12.35073 -11.93084 -11.71149 -11.61966 -11.30259 -11.07460 -10.62469 -9.81013 -9.01511 -8.25105 -6.33771 0.30444 0.57531 1.26522 1.33610 1.34948 1.46329 2.17270 2.36390 2.49103 2.95631 3.09077 3.61026 3.92033 4.03633 4.15013 4.21689 4.25681 4.37862 4.44336 4.52920 4.55645 4.62942 4.75635 4.86122 4.99412 5.12204 5.16736 5.33767 5.40419 5.49356 5.54733 5.57934 5.66409 5.72941 5.95687 6.15981 6.70625 6.78205 7.03231 7.33605 8.86571 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.005550 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.936165 B = 5044.163924 C = 6289.455524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 H 0.062 0.938 4 C 0.029 3.971 5 C -0.532 4.532 6 H 0.045 0.955 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.271 1.271 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.222 4.222 16 C -0.080 4.080 17 C -0.151 4.151 18 C -0.047 4.047 19 C -0.066 4.066 20 C 0.482 3.518 21 O -0.553 6.553 22 O -0.511 6.511 23 C -0.167 4.167 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.000 1.000 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.426 0.574 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 5.920 21.282 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.195 1.195 13 O -0.238 6.238 14 C 0.067 3.933 15 C -0.240 4.240 16 C -0.098 4.098 17 C -0.169 4.169 18 C -0.047 4.047 19 C -0.103 4.103 20 C 0.325 3.675 21 O -0.444 6.444 22 O -0.324 6.324 23 C -0.185 4.185 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.018 0.982 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.287 0.713 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.360 5.700 20.848 21.873 hybrid contribution 1.603 -0.019 -0.941 1.859 sum -1.757 5.680 19.907 20.776 Atomic orbital electron populations 1.22295 0.93826 1.02863 1.03254 1.22577 0.94163 0.95907 0.83544 0.92035 1.19118 0.95321 0.95190 0.91184 1.21428 0.93419 1.34480 1.07710 0.93709 1.25802 1.03264 0.94815 0.95239 1.70052 1.37410 1.36670 1.12683 0.85586 0.80030 0.78649 0.77658 1.20163 1.19738 1.19531 1.86169 1.81133 1.39365 1.17135 1.19488 0.95148 0.91547 0.87106 1.21552 1.07243 0.94091 1.01128 1.21250 0.96793 1.00222 0.91501 1.21211 1.01374 0.94437 0.99895 1.19266 0.97582 0.94457 0.93370 1.20378 0.85955 1.05856 0.98115 1.23735 0.91364 0.74156 0.78195 1.90803 1.75523 1.40188 1.37875 1.84475 1.27267 1.74033 1.46653 1.20439 1.04684 1.01587 0.91818 0.90000 0.92424 0.90899 0.98200 0.95484 0.92564 0.85047 0.82904 0.82852 0.82638 0.84672 0.71256 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 9.17 71.98 0.66 -5.00 16 2 C 0.09 4.10 2.17 30.60 0.07 4.17 16 3 H 0.06 2.65 6.32 -2.39 -0.02 2.63 16 4 C 0.03 1.57 4.68 29.85 0.14 1.70 16 5 C -0.53 -31.99 8.88 25.60 0.23 -31.76 16 6 H 0.04 2.73 7.74 -2.91 -0.02 2.70 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.96 46.84 29.54 68.60 2.03 48.86 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 O -0.32 -14.82 9.55 -92.40 -0.88 -15.70 16 14 C 0.11 4.35 6.60 22.51 0.15 4.49 16 15 C -0.22 -7.19 8.23 22.37 0.18 -7.01 16 16 C -0.08 -2.03 10.04 22.25 0.22 -1.80 16 17 C -0.15 -3.49 9.70 22.28 0.22 -3.27 16 18 C -0.05 -1.19 4.37 -19.88 -0.09 -1.27 16 19 C -0.07 -1.10 5.94 29.10 0.17 -0.93 16 20 C 0.48 10.34 8.32 71.23 0.59 10.93 16 21 O -0.55 -17.81 16.79 21.96 0.37 -17.44 16 22 O -0.51 -7.51 13.42 -51.44 -0.69 -8.20 16 23 C -0.17 -5.62 9.64 22.36 0.22 -5.40 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.07 2.14 6.90 -2.39 -0.02 2.12 16 27 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.13 4.10 5.43 -2.91 -0.02 4.08 16 31 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.16 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.14 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.43 3.31 9.10 -74.06 -0.67 2.64 16 36 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -78.49 313.83 4.75 -73.74 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.42 Total: 10.06 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.22 Total: -34.27 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.20 Total: -41.34 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.49 4.75 -73.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.957 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds