Wall clock time and date at job start Mon Mar 30 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47675 * 2 1 4 4 C 1.53000 * 109.47094 * 240.00079 * 2 1 3 5 5 C 1.50693 * 109.47378 * 175.00435 * 4 2 1 6 6 H 1.08000 * 120.00363 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00055 * 359.72146 * 7 5 4 9 9 Si 1.86802 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47004 * 179.72162 * 9 7 5 11 11 H 1.48497 * 109.46793 * 299.71963 * 9 7 5 12 12 H 1.48497 * 109.47323 * 59.71846 * 9 7 5 13 13 O 1.42898 * 109.46940 * 120.00500 * 2 1 3 14 14 C 1.35903 * 116.99948 * 275.34704 * 13 2 1 15 15 C 1.38734 * 120.05569 * 5.07799 * 14 13 2 16 16 C 1.38143 * 119.94313 * 179.70137 * 15 14 13 17 17 C 1.38271 * 120.05703 * 0.59681 * 16 15 14 18 18 C 1.50699 * 119.94429 * 179.70385 * 17 16 15 19 19 C 1.50702 * 109.47025 * 269.97727 * 18 17 16 20 20 O 1.20833 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.34224 * 120.00010 * 179.97438 * 19 18 17 22 22 C 1.38267 * 120.10916 * 359.68075 * 17 16 15 23 23 C 1.38139 * 120.05429 * 0.02562 * 22 17 16 24 24 H 1.08996 * 109.47675 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46915 * 299.99996 * 1 2 3 26 26 H 1.09000 * 109.46822 * 59.99121 * 1 2 3 27 27 H 1.09004 * 109.47170 * 54.99992 * 4 2 1 28 28 H 1.09007 * 109.46904 * 295.00405 * 4 2 1 29 29 H 0.97001 * 119.99718 * 0.27157 * 8 7 5 30 30 H 1.08005 * 120.02492 * 359.97438 * 15 14 13 31 31 H 1.08005 * 119.97144 * 180.28105 * 16 15 14 32 32 H 1.09003 * 109.47105 * 29.97669 * 18 17 16 33 33 H 1.09000 * 109.47154 * 149.97709 * 18 17 16 34 34 H 0.96698 * 116.99875 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.96760 * 179.97438 * 22 17 16 36 36 H 1.08006 * 120.02865 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0857 -0.5396 7 6 4.2303 -1.1928 -2.3584 8 7 3.5767 -1.8412 -3.2975 9 14 6.0920 -1.0617 -2.4367 10 1 6.5875 -1.7668 -3.6460 11 1 6.4852 0.3688 -2.5019 12 1 6.6834 -1.6828 -1.2244 13 8 2.0063 -0.6737 1.1667 14 6 2.1055 0.0606 2.3059 15 6 1.6536 1.3721 2.3288 16 6 1.7499 2.1145 3.4898 17 6 2.3075 1.5555 4.6250 18 6 2.4175 2.3698 5.8882 19 6 3.7374 3.0969 5.9039 20 8 4.5094 2.9675 4.9834 21 8 4.0551 3.8891 6.9398 22 6 2.7640 0.2505 4.6031 23 6 2.6643 -0.4979 3.4463 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.6053 -0.2617 -2.1370 28 1 1.7515 -1.7715 -1.2056 29 1 2.6100 -1.9097 -3.2566 30 1 1.2227 1.8108 1.4409 31 1 1.3941 3.1340 3.5094 32 1 1.6035 3.0938 5.9259 33 1 2.3564 1.7091 6.7529 34 1 4.9128 4.3343 6.9052 35 1 3.1994 -0.1836 5.4909 36 1 3.0213 -1.5171 3.4296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695793468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:43 Heat of formation + Delta-G solvation = -122.883539 kcal Electronic energy + Delta-G solvation = -19345.701695 eV Core-core repulsion = 16180.573680 eV Total energy + Delta-G solvation = -3165.128015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52294 -39.70839 -37.56536 -36.17822 -33.89931 -32.35754 -31.44361 -30.63326 -27.45327 -26.99544 -23.35492 -22.88140 -22.53755 -20.96812 -19.98861 -18.22729 -17.81447 -16.87718 -16.64896 -16.20330 -15.35615 -15.21151 -14.68116 -14.33488 -13.70644 -13.44217 -13.40792 -13.20925 -12.89766 -12.63827 -12.45635 -11.89015 -11.74210 -11.62738 -11.52314 -11.36058 -11.12400 -10.72048 -10.64560 -10.54658 -10.21106 -10.03492 -9.67619 -8.78552 -8.56237 -8.32923 -7.74389 -6.35117 -4.03432 1.53843 1.57033 2.09323 2.97035 3.47893 3.50307 3.68526 3.83019 4.04411 4.55124 4.57329 4.77528 5.05030 5.17108 5.24885 5.27094 5.42907 5.45751 5.55704 5.61250 5.72218 5.80345 5.92817 6.10984 6.19141 6.33604 6.43271 6.43626 6.55614 6.66584 6.71274 6.96936 7.20265 7.31811 7.75824 8.04887 8.19000 8.47385 8.88538 9.66443 11.05737 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.004635 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.026227 B = 6039.842306 C = 6901.491696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 H 0.064 0.936 4 C 0.012 3.988 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 1.068 2.932 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.287 1.287 13 O -0.290 6.290 14 C 0.159 3.841 15 C -0.215 4.215 16 C -0.061 4.061 17 C -0.143 4.143 18 C -0.059 4.059 19 C 0.471 3.529 20 O -0.499 6.499 21 O -0.524 6.524 22 C -0.062 4.062 23 C -0.161 4.161 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.408 0.592 35 H 0.122 0.878 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 9.218 19.188 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.024 4.024 5 C -0.633 4.633 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.214 1.214 13 O -0.202 6.202 14 C 0.111 3.889 15 C -0.233 4.233 16 C -0.079 4.079 17 C -0.143 4.143 18 C -0.096 4.096 19 C 0.312 3.688 20 O -0.385 6.385 21 O -0.336 6.336 22 C -0.080 4.080 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.267 0.733 35 H 0.140 0.860 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.751 8.336 17.974 20.165 hybrid contribution -0.816 1.001 0.811 1.525 sum -4.567 9.337 18.785 21.469 Atomic orbital electron populations 1.22433 0.96914 1.02617 1.01618 1.22682 0.91682 0.97081 0.84838 0.91756 1.19373 0.97703 0.95837 0.89535 1.21950 0.91383 1.38756 1.11218 0.93199 1.25815 1.06940 0.93354 0.92597 1.70804 1.10233 1.39725 1.34262 0.83558 0.74388 0.76331 0.76143 1.20743 1.21445 1.21358 1.86272 1.79637 1.38165 1.16124 1.19271 0.91921 0.90180 0.87520 1.21316 1.07657 0.94774 0.99598 1.20669 0.96965 0.98556 0.91729 1.18951 1.06068 0.94873 0.94442 1.20121 0.92269 0.98763 0.98493 1.23667 0.89426 0.76722 0.78978 1.90799 1.51129 1.60482 1.36094 1.84526 1.43343 1.58887 1.46879 1.20663 0.96966 0.93157 0.97260 1.20413 1.04612 1.01550 0.91355 0.91931 0.93011 0.91405 0.95377 0.96206 0.92240 0.85146 0.86407 0.87186 0.87122 0.73321 0.85962 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.17 37.16 0.34 -2.69 16 2 C 0.09 1.97 2.17 -26.73 -0.06 1.91 16 3 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 4 C 0.01 0.32 3.99 -27.89 -0.11 0.20 16 5 C -0.59 -17.40 8.88 -34.44 -0.31 -17.70 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 8 N -0.91 -28.31 13.65 55.43 0.76 -27.56 16 9 Si 1.07 26.27 29.90 -169.99 -5.08 21.19 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 O -0.29 -6.37 9.55 -19.44 -0.19 -6.55 16 14 C 0.16 2.98 6.60 -39.21 -0.26 2.72 16 15 C -0.21 -3.55 8.23 -39.43 -0.32 -3.87 16 16 C -0.06 -0.85 9.69 -39.60 -0.38 -1.23 16 17 C -0.14 -1.84 4.38 -104.60 -0.46 -2.30 16 18 C -0.06 -0.53 5.94 -29.03 -0.17 -0.70 16 19 C 0.47 5.13 8.32 36.01 0.30 5.43 16 20 O -0.50 -7.75 16.79 -18.76 -0.31 -8.06 16 21 O -0.52 -4.14 13.42 -39.24 -0.53 -4.67 16 22 C -0.06 -0.86 9.69 -39.61 -0.38 -1.24 16 23 C -0.16 -2.67 9.99 -39.43 -0.39 -3.07 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.77 6.90 -51.92 -0.36 0.42 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.73 8.01 -51.93 -0.42 0.31 16 28 H 0.02 0.54 8.01 -51.93 -0.42 0.12 16 29 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 30 H 0.13 2.07 5.43 -52.48 -0.29 1.78 16 31 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.41 1.73 9.10 45.56 0.41 2.14 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -35.48 312.51 -6.79 -42.27 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.84 Total: 0.82 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.31 Total: -22.15 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.76 Total: -27.56 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.03 Total: -19.28 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.08 Total: 21.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.48 -6.79 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.614 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds