Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47675 * 2 1 4 4 C 1.53000 * 109.47094 * 240.00079 * 2 1 3 5 5 C 1.50693 * 109.47378 * 175.00435 * 4 2 1 6 6 H 1.08000 * 120.00363 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00055 * 359.72146 * 7 5 4 9 9 Si 1.86802 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47004 * 179.72162 * 9 7 5 11 11 H 1.48497 * 109.46793 * 299.71963 * 9 7 5 12 12 H 1.48497 * 109.47323 * 59.71846 * 9 7 5 13 13 O 1.42898 * 109.46940 * 120.00500 * 2 1 3 14 14 C 1.35903 * 116.99948 * 275.34704 * 13 2 1 15 15 C 1.38734 * 120.05569 * 5.07799 * 14 13 2 16 16 C 1.38143 * 119.94313 * 179.70137 * 15 14 13 17 17 C 1.38271 * 120.05703 * 0.59681 * 16 15 14 18 18 C 1.50699 * 119.94429 * 179.70385 * 17 16 15 19 19 C 1.50702 * 109.47025 * 269.97727 * 18 17 16 20 20 O 1.20833 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.34224 * 120.00010 * 179.97438 * 19 18 17 22 22 C 1.38267 * 120.10916 * 359.68075 * 17 16 15 23 23 C 1.38139 * 120.05429 * 0.02562 * 22 17 16 24 24 H 1.08996 * 109.47675 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46915 * 299.99996 * 1 2 3 26 26 H 1.09000 * 109.46822 * 59.99121 * 1 2 3 27 27 H 1.09004 * 109.47170 * 54.99992 * 4 2 1 28 28 H 1.09007 * 109.46904 * 295.00405 * 4 2 1 29 29 H 0.97001 * 119.99718 * 0.27157 * 8 7 5 30 30 H 1.08005 * 120.02492 * 359.97438 * 15 14 13 31 31 H 1.08005 * 119.97144 * 180.28105 * 16 15 14 32 32 H 1.09003 * 109.47105 * 29.97669 * 18 17 16 33 33 H 1.09000 * 109.47154 * 149.97709 * 18 17 16 34 34 H 0.96698 * 116.99875 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.96760 * 179.97438 * 22 17 16 36 36 H 1.08006 * 120.02865 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0857 -0.5396 7 6 4.2303 -1.1928 -2.3584 8 7 3.5767 -1.8412 -3.2975 9 14 6.0920 -1.0617 -2.4367 10 1 6.5875 -1.7668 -3.6460 11 1 6.4852 0.3688 -2.5019 12 1 6.6834 -1.6828 -1.2244 13 8 2.0063 -0.6737 1.1667 14 6 2.1055 0.0606 2.3059 15 6 1.6536 1.3721 2.3288 16 6 1.7499 2.1145 3.4898 17 6 2.3075 1.5555 4.6250 18 6 2.4175 2.3698 5.8882 19 6 3.7374 3.0969 5.9039 20 8 4.5094 2.9675 4.9834 21 8 4.0551 3.8891 6.9398 22 6 2.7640 0.2505 4.6031 23 6 2.6643 -0.4979 3.4463 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.6053 -0.2617 -2.1370 28 1 1.7515 -1.7715 -1.2056 29 1 2.6100 -1.9097 -3.2566 30 1 1.2227 1.8108 1.4409 31 1 1.3941 3.1340 3.5094 32 1 1.6035 3.0938 5.9259 33 1 2.3564 1.7091 6.7529 34 1 4.9128 4.3343 6.9052 35 1 3.1994 -0.1836 5.4909 36 1 3.0213 -1.5171 3.4296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695793468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = -146.411897 kcal Electronic energy + Delta-G solvation = -19346.721961 eV Core-core repulsion = 16180.573680 eV Total energy + Delta-G solvation = -3166.148281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50126 -40.91601 -38.83435 -36.99933 -35.88798 -33.80761 -32.81310 -31.87404 -29.08166 -28.33846 -25.25371 -24.30029 -23.61152 -22.18744 -21.31664 -19.24696 -19.04216 -19.00563 -17.46466 -17.21551 -16.60140 -16.30430 -16.16557 -15.72345 -15.53950 -14.91259 -14.80813 -14.45771 -14.20549 -14.02012 -13.56157 -13.31196 -13.16882 -13.09360 -12.81424 -12.59294 -12.47605 -12.45600 -12.01444 -11.91552 -11.80244 -11.53547 -11.42812 -10.71117 -10.60263 -9.94579 -9.02763 -8.73038 -6.41831 0.38299 0.40629 1.30227 1.47412 1.55473 1.75880 2.20630 2.39734 2.51568 2.92203 3.12486 3.67383 3.81647 3.87843 3.99071 4.09518 4.25175 4.32982 4.39178 4.49488 4.58839 4.65314 4.72978 4.77029 4.85642 4.97532 5.07094 5.13255 5.20360 5.33849 5.46425 5.55751 5.69598 5.88383 5.93386 6.11784 6.50676 6.64578 7.06988 7.36004 8.68671 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.004635 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.026227 B = 6039.842306 C = 6901.491696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 H 0.061 0.939 4 C 0.012 3.988 5 C -0.609 4.609 6 H 0.038 0.962 7 C -0.034 4.034 8 N -0.935 5.935 9 Si 1.112 2.888 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.277 1.277 13 O -0.324 6.324 14 C 0.116 3.884 15 C -0.225 4.225 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.057 4.057 19 C 0.479 3.521 20 O -0.555 6.555 21 O -0.512 6.512 22 C -0.062 4.062 23 C -0.180 4.180 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.022 0.978 28 H -0.004 1.004 29 H 0.257 0.743 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.425 0.575 35 H 0.154 0.846 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 11.100 21.990 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.079 0.921 4 C -0.025 4.025 5 C -0.647 4.647 6 H 0.056 0.944 7 C -0.231 4.231 8 N -0.572 5.572 9 Si 0.934 3.066 10 H -0.201 1.201 11 H -0.195 1.195 12 H -0.202 1.202 13 O -0.238 6.238 14 C 0.070 3.930 15 C -0.243 4.243 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.094 4.094 19 C 0.323 3.677 20 O -0.446 6.446 21 O -0.326 6.326 22 C -0.079 4.079 23 C -0.198 4.198 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.286 0.714 35 H 0.172 0.828 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.794 10.248 20.826 23.519 hybrid contribution -0.809 0.495 0.132 0.958 sum -4.603 10.743 20.958 23.996 Atomic orbital electron populations 1.22312 0.93609 1.02952 1.03451 1.22412 0.94168 0.95704 0.83329 0.92116 1.19278 0.96183 0.94929 0.92087 1.22284 0.93315 1.38362 1.10770 0.94383 1.27292 1.11180 0.92519 0.92146 1.70920 1.09795 1.41249 1.35265 0.82994 0.69427 0.77517 0.76687 1.20092 1.19450 1.20219 1.86166 1.81072 1.39464 1.17139 1.19614 0.94844 0.91491 0.87047 1.21436 1.07908 0.94130 1.00858 1.21086 0.96412 0.99672 0.91043 1.19423 1.03324 0.94713 0.95755 1.20271 0.92305 0.99517 0.97323 1.23917 0.89272 0.76117 0.78348 1.90805 1.52976 1.62572 1.38233 1.84484 1.44579 1.58161 1.45370 1.21066 0.96187 0.93560 0.97134 1.20635 1.05159 1.01956 0.92092 0.92338 0.90663 0.89951 0.95957 0.98584 0.93351 0.85174 0.83331 0.83895 0.83795 0.71354 0.82808 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 9.17 71.98 0.66 -4.99 16 2 C 0.10 4.38 2.17 30.59 0.07 4.45 16 3 H 0.06 2.65 6.31 -2.39 -0.02 2.64 16 4 C 0.01 0.65 3.99 29.85 0.12 0.77 16 5 C -0.61 -36.89 8.88 25.60 0.23 -36.66 16 6 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 7 C -0.03 -2.04 5.46 84.66 0.46 -1.58 16 8 N -0.93 -59.42 13.65 21.45 0.29 -59.13 16 9 Si 1.11 53.30 29.90 68.60 2.05 55.35 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 O -0.32 -14.92 9.55 -92.46 -0.88 -15.80 16 14 C 0.12 4.46 6.60 22.51 0.15 4.61 16 15 C -0.22 -7.32 8.23 22.37 0.18 -7.14 16 16 C -0.06 -1.63 9.69 22.26 0.22 -1.42 16 17 C -0.13 -2.98 4.38 -19.85 -0.09 -3.06 16 18 C -0.06 -0.75 5.94 29.10 0.17 -0.58 16 19 C 0.48 8.73 8.32 71.24 0.59 9.32 16 20 O -0.56 -16.13 16.79 21.94 0.37 -15.76 16 21 O -0.51 -6.08 13.42 -51.36 -0.69 -6.77 16 22 C -0.06 -1.57 9.69 22.25 0.22 -1.36 16 23 C -0.18 -6.04 9.99 22.37 0.22 -5.81 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 2.19 6.90 -2.38 -0.02 2.17 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.02 1.21 8.01 -2.38 -0.02 1.19 16 28 H 0.00 -0.24 8.01 -2.38 -0.02 -0.26 16 29 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 30 H 0.13 4.10 5.43 -2.91 -0.02 4.09 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.14 1.04 8.08 -2.39 -0.02 1.03 16 33 H 0.14 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.43 2.19 9.10 -74.06 -0.67 1.52 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 36 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -80.31 312.51 4.86 -75.45 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.52 Total: 10.12 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 3.20 Total: -43.45 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.29 Total: -59.13 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.20 Total: -38.33 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 2.05 Total: 55.35 kcal Total: -80.31 4.86 -75.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.966 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds