Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37698 * 119.95463 * 2 1 4 4 C 1.39778 * 119.90325 * 179.97438 * 3 2 1 5 5 C 1.47476 * 120.08910 * 180.02562 * 4 3 2 6 6 O 1.21507 * 120.00161 * 0.02562 * 5 4 3 7 7 O 1.34749 * 119.99760 * 180.02562 * 5 4 3 8 8 C 1.39804 * 119.81608 * 0.02562 * 4 3 2 9 9 C 1.37661 * 119.90656 * 359.72295 * 8 4 3 10 10 C 1.38996 * 119.95090 * 179.97438 * 2 1 3 11 11 O 1.35699 * 119.90534 * 0.02562 * 10 2 1 12 12 C 1.42898 * 116.99843 * 185.67888 * 11 10 2 13 13 H 1.09002 * 109.47221 * 35.27358 * 12 11 10 14 14 C 1.53005 * 109.47226 * 275.27667 * 12 11 10 15 15 C 1.52996 * 109.47010 * 155.27137 * 12 11 10 16 16 C 1.50694 * 109.47180 * 295.00120 * 15 12 11 17 17 H 1.08000 * 120.00052 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99994 * 179.72879 * 16 15 12 19 19 N 1.31516 * 119.99852 * 0.26856 * 18 16 15 20 20 Si 1.86801 * 120.00121 * 180.27658 * 18 16 15 21 21 H 1.48502 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46926 * 119.99327 * 20 18 16 23 23 H 1.48499 * 109.46669 * 239.99497 * 20 18 16 24 24 H 1.09000 * 109.47341 * 270.02365 * 1 2 3 25 25 H 1.09005 * 109.47148 * 30.02162 * 1 2 3 26 26 H 1.09002 * 109.47194 * 150.01816 * 1 2 3 27 27 H 1.07997 * 120.04803 * 359.95908 * 3 2 1 28 28 H 0.96697 * 116.99648 * 180.02562 * 7 5 4 29 29 H 1.08005 * 120.04947 * 180.02562 * 8 4 3 30 30 H 1.08002 * 119.95159 * 180.27926 * 9 8 4 31 31 H 1.09002 * 109.46768 * 299.99968 * 14 12 11 32 32 H 1.08990 * 109.47295 * 60.00015 * 14 12 11 33 33 H 1.08998 * 109.47011 * 180.02562 * 14 12 11 34 34 H 1.09004 * 109.47301 * 174.99916 * 15 12 11 35 35 H 1.08999 * 109.47100 * 55.00177 * 15 12 11 36 36 H 0.97001 * 120.00266 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1930 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3328 2.4672 0.0011 6 8 3.7279 3.5209 0.0016 7 8 5.6803 2.4638 0.0011 8 6 4.2863 -0.0218 0.0005 9 6 3.5912 -1.2100 0.0058 10 6 2.2009 -1.2043 0.0005 11 8 1.5195 -2.3778 0.0005 12 6 2.2893 -3.5750 0.1271 13 1 3.1372 -3.3937 0.7877 14 6 2.7988 -4.0019 -1.2511 15 6 1.4142 -4.6845 0.7136 16 6 1.0132 -4.3179 2.1191 17 1 1.3493 -3.3869 2.5512 18 6 0.2130 -5.1687 2.8519 19 7 -0.1960 -6.3027 2.3260 20 14 -0.2905 -4.7107 4.5915 21 1 0.2970 -3.3938 4.9463 22 1 -1.7711 -4.6309 4.6735 23 1 0.2028 -5.7435 5.5376 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5136 27 1 1.6546 2.1283 -0.0007 28 1 6.1214 3.3243 0.0019 29 1 5.3664 -0.0272 0.0014 30 1 4.1267 -2.1480 0.0103 31 1 1.9509 -4.1833 -1.9116 32 1 3.4222 -3.2116 -1.6688 33 1 3.3856 -4.9154 -1.1545 34 1 1.9739 -5.6197 0.7276 35 1 0.5209 -4.8049 0.1006 36 1 -0.7592 -6.9011 2.8413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -123.218229 kcal Electronic energy + Delta-G solvation = -19575.535419 eV Core-core repulsion = 16410.392891 eV Total energy + Delta-G solvation = -3165.142528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53008 -39.67759 -37.32876 -36.08117 -33.69266 -32.76856 -31.48933 -30.18463 -27.56129 -26.77364 -24.53436 -23.25629 -22.38424 -20.90974 -19.92603 -18.02971 -17.75420 -16.88660 -16.45282 -15.70766 -15.62443 -14.80406 -14.69070 -14.40377 -13.88468 -13.54954 -13.24696 -12.98054 -12.70000 -12.32845 -12.02039 -11.93275 -11.86746 -11.67354 -11.62705 -11.46066 -11.16542 -10.82370 -10.75337 -10.61366 -10.46846 -10.11319 -9.49420 -9.18522 -8.81246 -8.45362 -7.92015 -6.08151 -4.10060 0.87758 1.41341 2.61094 3.02294 3.27874 3.35944 3.40697 3.67235 3.87161 4.41029 4.82201 4.90856 5.10369 5.24470 5.29269 5.36121 5.50975 5.57978 5.64942 5.80081 5.85528 5.96794 5.98992 6.08820 6.24117 6.34301 6.36382 6.41574 6.50212 6.59549 6.63752 6.81840 7.38993 7.48527 7.86779 7.87947 7.93936 8.27326 8.93689 9.54103 11.03145 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.004789 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.373367 B = 5844.754073 C = 6231.367738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.140 4.140 3 C -0.016 4.016 4 C -0.190 4.190 5 C 0.534 3.466 6 O -0.527 6.527 7 O -0.516 6.516 8 C -0.022 4.022 9 C -0.230 4.230 10 C 0.193 3.807 11 O -0.278 6.278 12 C 0.082 3.918 13 H 0.066 0.934 14 C -0.179 4.179 15 C 0.026 3.974 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.410 0.590 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 11.990 -6.394 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.141 4.141 3 C -0.034 4.034 4 C -0.192 4.192 5 C 0.380 3.620 6 O -0.418 6.418 7 O -0.327 6.327 8 C -0.041 4.041 9 C -0.249 4.249 10 C 0.143 3.857 11 O -0.189 6.189 12 C 0.027 3.973 13 H 0.084 0.916 14 C -0.236 4.236 15 C -0.011 4.011 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.268 0.732 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.982 11.654 -6.372 15.496 hybrid contribution 0.288 0.620 1.018 1.226 sum 8.270 12.273 -5.354 15.738 Atomic orbital electron populations 1.20590 0.89734 1.02752 1.02848 1.19206 0.97136 0.89810 1.07942 1.20863 0.91787 0.97699 0.93089 1.18724 0.93116 0.90274 1.17058 1.20871 0.80033 0.89521 0.71538 1.90862 1.69584 1.33751 1.47617 1.84584 1.21432 1.40553 1.86145 1.21139 1.00025 0.90612 0.92291 1.21376 0.93393 0.99554 1.10584 1.19433 0.90421 0.87311 0.88511 1.86264 1.36572 1.12113 1.83961 1.23021 0.95477 0.83555 0.95218 0.91577 1.22429 1.01582 1.01487 0.98111 1.19281 0.95010 0.90751 0.96066 1.21135 1.31068 1.04940 0.98268 0.92556 1.24968 0.95936 0.94959 0.98351 1.69953 1.35739 1.10470 1.37294 0.86535 0.78428 0.78531 0.84562 1.19707 1.20901 1.20999 0.91042 0.92005 0.90495 0.84407 0.73240 0.84737 0.84214 0.91765 0.93145 0.91124 0.94193 0.95170 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.78 36.00 0.35 -1.12 16 2 C -0.14 -2.20 5.89 -104.54 -0.62 -2.81 16 3 C -0.02 -0.23 9.23 -39.20 -0.36 -0.59 16 4 C -0.19 -2.67 5.87 -104.97 -0.62 -3.28 16 5 C 0.53 7.05 8.26 34.49 0.29 7.33 16 6 O -0.53 -8.19 17.13 -19.27 -0.33 -8.52 16 7 O -0.52 -5.03 12.67 -40.63 -0.51 -5.55 16 8 C -0.02 -0.30 9.61 -39.21 -0.38 -0.67 16 9 C -0.23 -3.43 8.20 -39.50 -0.32 -3.75 16 10 C 0.19 3.28 6.58 -39.01 -0.26 3.03 16 11 O -0.28 -5.47 8.58 -18.80 -0.16 -5.63 16 12 C 0.08 1.59 2.17 -26.73 -0.06 1.53 16 13 H 0.07 1.23 6.31 -51.93 -0.33 0.91 16 14 C -0.18 -2.79 9.16 37.16 0.34 -2.45 16 15 C 0.03 0.62 4.68 -27.89 -0.13 0.49 16 16 C -0.52 -14.04 8.88 -34.44 -0.31 -14.35 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.08 1.19 7.52 -51.93 -0.39 0.80 16 27 H 0.14 1.82 7.64 -52.49 -0.40 1.42 16 28 H 0.41 2.05 9.11 45.56 0.42 2.46 16 29 H 0.13 1.48 7.60 -52.48 -0.40 1.08 16 30 H 0.14 1.93 5.39 -52.49 -0.28 1.65 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.69 6.87 -51.93 -0.36 0.33 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -31.50 311.61 -6.58 -38.08 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.82 Total: 0.93 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.17 Total: -15.10 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.01 Total: -19.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.50 -6.58 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.136 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds