Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37698 * 119.95463 * 2 1 4 4 C 1.39778 * 119.90325 * 179.97438 * 3 2 1 5 5 C 1.47476 * 120.08910 * 180.02562 * 4 3 2 6 6 O 1.21507 * 120.00161 * 0.02562 * 5 4 3 7 7 O 1.34749 * 119.99760 * 180.02562 * 5 4 3 8 8 C 1.39804 * 119.81608 * 0.02562 * 4 3 2 9 9 C 1.37661 * 119.90656 * 359.72295 * 8 4 3 10 10 C 1.38996 * 119.95090 * 179.97438 * 2 1 3 11 11 O 1.35699 * 119.90534 * 0.02562 * 10 2 1 12 12 C 1.42898 * 116.99843 * 185.67888 * 11 10 2 13 13 H 1.09002 * 109.47221 * 35.27358 * 12 11 10 14 14 C 1.53005 * 109.47226 * 275.27667 * 12 11 10 15 15 C 1.52996 * 109.47010 * 155.27137 * 12 11 10 16 16 C 1.50694 * 109.47180 * 295.00120 * 15 12 11 17 17 H 1.08000 * 120.00052 * 359.97438 * 16 15 12 18 18 C 1.37882 * 119.99994 * 179.72879 * 16 15 12 19 19 N 1.31516 * 119.99852 * 0.26856 * 18 16 15 20 20 Si 1.86801 * 120.00121 * 180.27658 * 18 16 15 21 21 H 1.48502 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46926 * 119.99327 * 20 18 16 23 23 H 1.48499 * 109.46669 * 239.99497 * 20 18 16 24 24 H 1.09000 * 109.47341 * 270.02365 * 1 2 3 25 25 H 1.09005 * 109.47148 * 30.02162 * 1 2 3 26 26 H 1.09002 * 109.47194 * 150.01816 * 1 2 3 27 27 H 1.07997 * 120.04803 * 359.95908 * 3 2 1 28 28 H 0.96697 * 116.99648 * 180.02562 * 7 5 4 29 29 H 1.08005 * 120.04947 * 180.02562 * 8 4 3 30 30 H 1.08002 * 119.95159 * 180.27926 * 9 8 4 31 31 H 1.09002 * 109.46768 * 299.99968 * 14 12 11 32 32 H 1.08990 * 109.47295 * 60.00015 * 14 12 11 33 33 H 1.08998 * 109.47011 * 180.02562 * 14 12 11 34 34 H 1.09004 * 109.47301 * 174.99916 * 15 12 11 35 35 H 1.08999 * 109.47100 * 55.00177 * 15 12 11 36 36 H 0.97001 * 120.00266 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1930 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3328 2.4672 0.0011 6 8 3.7279 3.5209 0.0016 7 8 5.6803 2.4638 0.0011 8 6 4.2863 -0.0218 0.0005 9 6 3.5912 -1.2100 0.0058 10 6 2.2009 -1.2043 0.0005 11 8 1.5195 -2.3778 0.0005 12 6 2.2893 -3.5750 0.1271 13 1 3.1372 -3.3937 0.7877 14 6 2.7988 -4.0019 -1.2511 15 6 1.4142 -4.6845 0.7136 16 6 1.0132 -4.3179 2.1191 17 1 1.3493 -3.3869 2.5512 18 6 0.2130 -5.1687 2.8519 19 7 -0.1960 -6.3027 2.3260 20 14 -0.2905 -4.7107 4.5915 21 1 0.2970 -3.3938 4.9463 22 1 -1.7711 -4.6309 4.6735 23 1 0.2028 -5.7435 5.5376 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5136 27 1 1.6546 2.1283 -0.0007 28 1 6.1214 3.3243 0.0019 29 1 5.3664 -0.0272 0.0014 30 1 4.1267 -2.1480 0.0103 31 1 1.9509 -4.1833 -1.9116 32 1 3.4222 -3.2116 -1.6688 33 1 3.3856 -4.9154 -1.1545 34 1 1.9739 -5.6197 0.7276 35 1 0.5209 -4.8049 0.1006 36 1 -0.7592 -6.9011 2.8413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695798174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -142.310268 kcal Electronic energy + Delta-G solvation = -19576.363312 eV Core-core repulsion = 16410.392891 eV Total energy + Delta-G solvation = -3165.970421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66156 -40.82859 -38.58261 -37.02820 -35.49380 -34.13613 -33.07648 -31.36094 -29.36384 -27.90855 -25.79337 -24.98829 -23.63733 -22.04553 -21.31836 -19.15119 -18.90869 -18.52401 -17.95764 -17.04252 -16.63987 -16.45695 -16.15351 -15.69151 -15.07880 -14.78644 -14.57701 -14.19887 -14.09277 -13.76978 -13.47306 -13.39903 -13.32493 -13.04842 -12.80687 -12.74655 -12.66103 -12.50173 -12.33435 -11.94737 -11.72357 -11.67597 -11.28726 -11.08027 -10.58808 -9.93498 -9.16569 -8.21148 -6.29587 -0.25087 0.29178 1.37853 1.39751 1.51543 1.53237 2.11454 2.33942 2.40092 2.73433 3.14128 3.72197 3.78979 3.99029 4.14756 4.17218 4.21509 4.30099 4.42359 4.50311 4.72580 4.81920 4.82289 4.87946 5.00826 5.14423 5.21262 5.25748 5.28894 5.37264 5.41404 5.49570 5.60497 5.72743 5.77235 6.18181 6.56605 6.82588 7.01760 7.38304 8.90596 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.004789 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.373367 B = 5844.754073 C = 6231.367738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.151 4.151 3 C -0.017 4.017 4 C -0.193 4.193 5 C 0.542 3.458 6 O -0.554 6.554 7 O -0.503 6.503 8 C -0.013 4.013 9 C -0.231 4.231 10 C 0.162 3.838 11 O -0.305 6.305 12 C 0.090 3.910 13 H 0.072 0.928 14 C -0.169 4.169 15 C 0.028 3.972 16 C -0.528 4.528 17 H 0.051 0.949 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.148 0.852 28 H 0.433 0.567 29 H 0.164 0.836 30 H 0.150 0.850 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.027 0.973 35 H 0.000 1.000 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 13.596 -6.178 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.035 4.035 4 C -0.194 4.194 5 C 0.389 3.611 6 O -0.447 6.447 7 O -0.317 6.317 8 C -0.031 4.031 9 C -0.249 4.249 10 C 0.115 3.885 11 O -0.217 6.217 12 C 0.035 3.965 13 H 0.090 0.910 14 C -0.226 4.226 15 C -0.009 4.009 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.201 1.201 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.295 0.705 29 H 0.181 0.819 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.018 0.982 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.749 13.282 -6.162 17.591 hybrid contribution -0.168 0.221 0.926 0.967 sum 9.581 13.503 -5.236 17.365 Atomic orbital electron populations 1.20584 0.89478 1.03173 1.02553 1.19383 0.97649 0.89939 1.08187 1.20986 0.92341 0.97503 0.92690 1.18968 0.93209 0.91237 1.16032 1.20638 0.80946 0.88578 0.70896 1.90863 1.70437 1.34483 1.48902 1.84520 1.19524 1.42478 1.85204 1.21394 1.01316 0.89569 0.90787 1.21524 0.92510 1.00718 1.10169 1.19709 0.91565 0.86614 0.90653 1.86185 1.37536 1.12883 1.85136 1.22722 0.94117 0.82508 0.97164 0.90974 1.22334 1.01715 1.02823 0.95728 1.19123 0.94552 0.92437 0.94760 1.21473 1.30917 1.04575 0.99681 0.93047 1.25793 0.96060 0.94924 1.02363 1.70060 1.36554 1.11492 1.38909 0.85539 0.78049 0.78440 0.79897 1.19257 1.20539 1.20096 0.91675 0.89373 0.92263 0.83403 0.70538 0.81881 0.83217 0.92486 0.90681 0.89845 0.95476 0.98166 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 9.78 71.24 0.70 -2.22 16 2 C -0.15 -4.64 5.89 -19.81 -0.12 -4.76 16 3 C -0.02 -0.47 9.23 22.51 0.21 -0.26 16 4 C -0.19 -4.93 5.87 -20.09 -0.12 -5.05 16 5 C 0.54 12.75 8.26 70.26 0.58 13.33 16 6 O -0.55 -15.95 17.13 19.81 0.34 -15.61 16 7 O -0.50 -7.90 12.67 -56.60 -0.72 -8.62 16 8 C -0.01 -0.30 9.61 22.51 0.22 -0.08 16 9 C -0.23 -6.43 8.20 22.32 0.18 -6.24 16 10 C 0.16 5.46 6.58 22.64 0.15 5.61 16 11 O -0.31 -12.17 8.58 -90.19 -0.77 -12.95 16 12 C 0.09 3.49 2.17 30.59 0.07 3.56 16 13 H 0.07 2.66 6.31 -2.39 -0.02 2.64 16 14 C -0.17 -5.12 9.16 71.98 0.66 -4.46 16 15 C 0.03 1.41 4.68 29.84 0.14 1.55 16 16 C -0.53 -29.36 8.88 25.60 0.23 -29.13 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.37 5.46 84.66 0.46 0.84 16 19 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 1.99 8.08 -2.38 -0.02 1.97 16 26 H 0.06 1.89 7.52 -2.39 -0.02 1.87 16 27 H 0.15 3.67 7.64 -2.91 -0.02 3.65 16 28 H 0.43 2.63 9.11 -74.06 -0.67 1.96 16 29 H 0.16 2.89 7.60 -2.91 -0.02 2.87 16 30 H 0.15 3.80 5.39 -2.91 -0.02 3.78 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.90 6.87 -2.39 -0.02 1.88 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -68.33 311.61 4.94 -63.38 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.43 Total: 9.75 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.35 Total: -27.32 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.15 Total: -37.18 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.33 4.94 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.926 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds