Wall clock time and date at job start Mon Mar 30 2020 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 116.99715 * 2 1 4 4 C 1.39282 * 119.83610 * 359.73495 * 3 2 1 5 5 C 1.36427 * 120.40753 * 179.71395 * 4 3 2 6 6 C 1.40174 * 120.05810 * 0.54900 * 5 4 3 7 7 C 1.46482 * 120.16561 * 179.73915 * 6 5 4 8 8 O 1.21335 * 120.00428 * 359.97438 * 7 6 5 9 9 C 1.40647 * 119.66374 * 359.73054 * 6 5 4 10 10 O 1.35609 * 120.19834 * 179.97438 * 9 6 5 11 11 C 1.42900 * 117.00329 * 185.50363 * 10 9 6 12 12 H 1.08996 * 109.46966 * 35.03074 * 11 10 9 13 13 C 1.52995 * 109.46894 * 275.03038 * 11 10 9 14 14 C 1.52998 * 109.47007 * 155.02843 * 11 10 9 15 15 C 1.50700 * 109.47486 * 294.99867 * 14 11 10 16 16 H 1.08004 * 119.99814 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00266 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99683 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00272 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46741 * 90.00209 * 19 17 15 21 21 H 1.48494 * 109.47638 * 210.00483 * 19 17 15 22 22 H 1.48501 * 109.46977 * 330.00878 * 19 17 15 23 23 C 1.38425 * 119.60358 * 359.97438 * 9 6 5 24 24 H 1.08998 * 109.47308 * 59.99677 * 1 2 3 25 25 H 1.09007 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47027 * 299.98866 * 1 2 3 27 27 H 1.08001 * 119.79268 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.96878 * 180.28035 * 5 4 3 29 29 H 1.08005 * 119.99909 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47344 * 299.99805 * 13 11 10 31 31 H 1.09002 * 109.46936 * 60.00251 * 13 11 10 32 32 H 1.09003 * 109.46985 * 179.97438 * 13 11 10 33 33 H 1.08997 * 109.47146 * 55.00632 * 14 11 10 34 34 H 1.09003 * 109.46934 * 174.99909 * 14 11 10 35 35 H 0.96997 * 119.99623 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.03165 * 180.02562 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2829 2.3747 -0.0056 5 6 1.8900 3.5964 0.0002 6 6 3.2889 3.6853 0.0003 7 6 3.9432 4.9958 0.0007 8 8 3.2742 6.0080 0.0006 9 6 4.0611 2.5097 0.0000 10 8 5.4152 2.5830 -0.0004 11 6 6.1315 1.3526 -0.1228 12 1 5.5823 0.6760 -0.7774 13 6 6.2857 0.7128 1.2584 14 6 7.5152 1.6249 -0.7161 15 6 7.3655 2.1407 -2.1241 16 1 6.3817 2.2625 -2.5528 17 6 8.4843 2.4581 -2.8647 18 7 9.6823 2.3102 -2.3424 19 14 8.2988 3.0967 -4.6103 20 1 8.1988 4.5782 -4.5873 21 1 9.4806 2.6927 -5.4135 22 1 7.0692 2.5270 -5.2177 23 6 3.4305 1.2774 0.0003 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 0.2048 2.3111 -0.0103 28 1 1.2922 4.4959 0.0004 29 1 5.0213 5.0612 0.0012 30 1 6.8349 1.3895 1.9131 31 1 5.2998 0.5188 1.6810 32 1 6.8317 -0.2259 1.1651 33 1 8.0307 2.3694 -0.1092 34 1 8.0940 0.7013 -0.7271 35 1 10.4694 2.5331 -2.8636 36 1 4.0167 0.3703 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695807017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:49 Heat of formation + Delta-G solvation = -93.766940 kcal Electronic energy + Delta-G solvation = -19760.911245 eV Core-core repulsion = 16597.045821 eV Total energy + Delta-G solvation = -3163.865424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57562 -39.10375 -38.39772 -36.29438 -33.55681 -31.78428 -30.86378 -29.64289 -27.68469 -27.38262 -24.26533 -23.60101 -22.44161 -20.86195 -20.04815 -18.65810 -16.88621 -16.44421 -16.37333 -16.09492 -15.93384 -15.03976 -14.77851 -14.63328 -14.16315 -13.98924 -13.64496 -13.04109 -12.83518 -12.58860 -12.45568 -12.30335 -11.98330 -11.73049 -11.51049 -11.40945 -10.98177 -10.84461 -10.72925 -10.47459 -10.12828 -9.53043 -9.36288 -9.19169 -8.49287 -8.43439 -7.97817 -6.06743 -4.08911 0.89361 1.53135 2.71148 3.05294 3.31260 3.37718 3.41091 3.61735 3.93145 4.42598 4.65756 4.74946 4.92927 4.94467 4.97248 5.24289 5.28133 5.31091 5.45099 5.56120 5.58803 5.68379 5.80311 5.88461 6.06205 6.15921 6.28318 6.44945 6.49224 6.55611 6.66499 7.20672 7.39618 7.48687 7.78800 7.89124 7.91450 8.27924 8.94665 9.55434 11.04429 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.005739 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.166251 B = 4878.126222 C = 5367.809929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.198 3.802 4 C -0.272 4.272 5 C 0.016 3.984 6 C -0.274 4.274 7 C 0.398 3.602 8 O -0.489 6.489 9 C 0.241 3.759 10 O -0.278 6.278 11 C 0.082 3.918 12 H 0.069 0.931 13 C -0.179 4.179 14 C 0.026 3.974 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.266 4.266 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 -4.070 6.448 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.151 3.849 4 C -0.291 4.291 5 C -0.002 4.002 6 C -0.276 4.276 7 C 0.260 3.740 8 O -0.365 6.365 9 C 0.191 3.809 10 O -0.189 6.189 11 C 0.028 3.972 12 H 0.087 0.913 13 C -0.236 4.236 14 C -0.011 4.011 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.285 4.285 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.537 -3.564 6.422 17.186 hybrid contribution -0.272 -0.009 -1.027 1.063 sum -15.809 -3.573 5.395 17.082 Atomic orbital electron populations 1.23104 0.78140 1.03971 1.01652 1.86034 1.21653 1.27236 1.87585 1.19013 0.91644 0.83986 0.90225 1.20753 1.00036 0.92108 1.16158 1.20702 0.92786 0.97446 0.89257 1.20158 0.93638 0.94435 1.19330 1.23715 0.95568 0.85948 0.68773 1.90460 1.69912 1.38517 1.37635 1.19070 0.84263 0.91844 0.85751 1.86223 1.12703 1.36088 1.83852 1.23076 0.96024 0.82697 0.95451 0.91332 1.22424 1.01633 1.01614 0.97943 1.19294 0.87332 0.98488 0.95992 1.21102 0.92727 1.43767 0.98055 0.92558 1.24958 0.95258 0.95567 0.98357 1.69942 0.97560 1.48591 1.37287 0.86598 0.77600 0.79387 0.84512 1.20485 1.21203 1.19882 1.20521 0.92283 0.98504 1.17239 0.92352 0.88189 0.92414 0.85286 0.84544 0.87195 0.91671 0.93074 0.91050 0.95045 0.94071 0.92855 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.80 101.05 0.99 1.20 16 2 O -0.31 -3.92 10.48 -18.69 -0.20 -4.12 16 3 C 0.20 2.78 6.69 -39.01 -0.26 2.52 16 4 C -0.27 -3.45 8.96 -39.85 -0.36 -3.81 16 5 C 0.02 0.23 9.53 -39.51 -0.38 -0.14 16 6 C -0.27 -4.49 5.88 -104.94 -0.62 -5.10 16 7 C 0.40 6.73 11.18 34.05 0.38 7.11 16 8 O -0.49 -9.10 17.15 5.51 0.09 -9.01 16 9 C 0.24 4.15 6.62 -38.60 -0.26 3.90 16 10 O -0.28 -5.39 8.73 -18.52 -0.16 -5.55 16 11 C 0.08 1.59 2.17 -26.73 -0.06 1.53 16 12 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 13 C -0.18 -2.81 9.17 37.16 0.34 -2.47 16 14 C 0.03 0.62 4.68 -27.88 -0.13 0.49 16 15 C -0.52 -14.05 8.88 -34.44 -0.31 -14.35 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.27 -4.20 8.17 -39.33 -0.32 -4.53 16 24 H 0.06 0.41 7.63 -51.93 -0.40 0.01 16 25 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.25 6.26 -52.49 -0.33 0.92 16 28 H 0.14 1.75 7.64 -52.49 -0.40 1.35 16 29 H 0.11 1.80 7.63 -52.48 -0.40 1.40 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.72 6.91 -51.93 -0.36 0.36 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.15 2.24 5.43 -52.48 -0.29 1.95 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -30.88 309.95 -5.50 -36.38 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.55 Total: -1.52 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.07 Total: -12.08 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.26 Total: -18.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.88 -5.50 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.387 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds