Wall clock time and date at job start Mon Mar 30 2020 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 116.99715 * 2 1 4 4 C 1.39282 * 119.83610 * 359.73495 * 3 2 1 5 5 C 1.36427 * 120.40753 * 179.71395 * 4 3 2 6 6 C 1.40174 * 120.05810 * 0.54900 * 5 4 3 7 7 C 1.46482 * 120.16561 * 179.73915 * 6 5 4 8 8 O 1.21335 * 120.00428 * 359.97438 * 7 6 5 9 9 C 1.40647 * 119.66374 * 359.73054 * 6 5 4 10 10 O 1.35609 * 120.19834 * 179.97438 * 9 6 5 11 11 C 1.42900 * 117.00329 * 185.50363 * 10 9 6 12 12 H 1.08996 * 109.46966 * 35.03074 * 11 10 9 13 13 C 1.52995 * 109.46894 * 275.03038 * 11 10 9 14 14 C 1.52998 * 109.47007 * 155.02843 * 11 10 9 15 15 C 1.50700 * 109.47486 * 294.99867 * 14 11 10 16 16 H 1.08004 * 119.99814 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00266 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99683 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00272 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46741 * 90.00209 * 19 17 15 21 21 H 1.48494 * 109.47638 * 210.00483 * 19 17 15 22 22 H 1.48501 * 109.46977 * 330.00878 * 19 17 15 23 23 C 1.38425 * 119.60358 * 359.97438 * 9 6 5 24 24 H 1.08998 * 109.47308 * 59.99677 * 1 2 3 25 25 H 1.09007 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47027 * 299.98866 * 1 2 3 27 27 H 1.08001 * 119.79268 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.96878 * 180.28035 * 5 4 3 29 29 H 1.08005 * 119.99909 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47344 * 299.99805 * 13 11 10 31 31 H 1.09002 * 109.46936 * 60.00251 * 13 11 10 32 32 H 1.09003 * 109.46985 * 179.97438 * 13 11 10 33 33 H 1.08997 * 109.47146 * 55.00632 * 14 11 10 34 34 H 1.09003 * 109.46934 * 174.99909 * 14 11 10 35 35 H 0.96997 * 119.99623 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.03165 * 180.02562 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2829 2.3747 -0.0056 5 6 1.8900 3.5964 0.0002 6 6 3.2889 3.6853 0.0003 7 6 3.9432 4.9958 0.0007 8 8 3.2742 6.0080 0.0006 9 6 4.0611 2.5097 0.0000 10 8 5.4152 2.5830 -0.0004 11 6 6.1315 1.3526 -0.1228 12 1 5.5823 0.6760 -0.7774 13 6 6.2857 0.7128 1.2584 14 6 7.5152 1.6249 -0.7161 15 6 7.3655 2.1407 -2.1241 16 1 6.3817 2.2625 -2.5528 17 6 8.4843 2.4581 -2.8647 18 7 9.6823 2.3102 -2.3424 19 14 8.2988 3.0967 -4.6103 20 1 8.1988 4.5782 -4.5873 21 1 9.4806 2.6927 -5.4135 22 1 7.0692 2.5270 -5.2177 23 6 3.4305 1.2774 0.0003 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 0.2048 2.3111 -0.0103 28 1 1.2922 4.4959 0.0004 29 1 5.0213 5.0612 0.0012 30 1 6.8349 1.3895 1.9131 31 1 5.2998 0.5188 1.6810 32 1 6.8317 -0.2259 1.1651 33 1 8.0307 2.3694 -0.1092 34 1 8.0940 0.7013 -0.7271 35 1 10.4694 2.5331 -2.8636 36 1 4.0167 0.3703 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695807017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:49 Heat of formation + Delta-G solvation = -112.453796 kcal Electronic energy + Delta-G solvation = -19761.721568 eV Core-core repulsion = 16597.045821 eV Total energy + Delta-G solvation = -3164.675747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75857 -40.23997 -39.78092 -37.49010 -35.43272 -33.49379 -31.99515 -30.86720 -29.36589 -28.26143 -25.43405 -25.35420 -23.89279 -22.08127 -21.49640 -19.80028 -18.52914 -18.06604 -17.63949 -17.27375 -16.81306 -16.58471 -16.16289 -16.08147 -15.41604 -15.35622 -15.04613 -14.45312 -14.16377 -13.78888 -13.75618 -13.60757 -13.35137 -13.21651 -13.04374 -12.70439 -12.65308 -12.34516 -12.13164 -11.85791 -11.64153 -11.35041 -11.08516 -10.73072 -10.56845 -9.65925 -9.17571 -8.19934 -6.28206 -0.31406 0.37347 1.39575 1.41173 1.45179 1.50713 2.09385 2.32504 2.40990 2.73999 3.15403 3.46919 3.66817 3.94020 3.97931 4.12367 4.21561 4.32621 4.39480 4.42136 4.42786 4.55591 4.59221 4.76853 4.83379 4.94012 5.05213 5.14446 5.22832 5.30068 5.36185 5.46460 5.57954 5.78257 6.18170 6.26793 6.42275 6.53532 6.83663 7.39572 8.91505 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.005739 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.166251 B = 4878.126222 C = 5367.809929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.204 3.796 4 C -0.256 4.256 5 C 0.017 3.983 6 C -0.291 4.291 7 C 0.401 3.599 8 O -0.510 6.510 9 C 0.223 3.777 10 O -0.301 6.301 11 C 0.091 3.909 12 H 0.071 0.929 13 C -0.169 4.169 14 C 0.028 3.972 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.279 4.279 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.074 0.926 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.005 0.995 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -4.850 6.250 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.157 3.843 4 C -0.275 4.275 5 C -0.001 4.001 6 C -0.293 4.293 7 C 0.265 3.735 8 O -0.388 6.388 9 C 0.174 3.826 10 O -0.213 6.213 11 C 0.036 3.964 12 H 0.089 0.911 13 C -0.226 4.226 14 C -0.008 4.008 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.298 4.298 24 H 0.088 0.912 25 H 0.141 0.859 26 H 0.092 0.908 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.023 0.977 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.263 -4.364 6.229 19.783 hybrid contribution 0.418 0.153 -0.939 1.039 sum -17.845 -4.210 5.289 19.083 Atomic orbital electron populations 1.23514 0.75454 1.06119 1.03002 1.86037 1.24372 1.26384 1.86915 1.19083 0.91212 0.85152 0.88869 1.21108 1.01830 0.90809 1.13744 1.20927 0.91781 0.98789 0.88588 1.20200 0.94763 0.93559 1.20791 1.23745 0.95543 0.86222 0.67990 1.90442 1.70174 1.39142 1.39068 1.19185 0.83230 0.92876 0.87263 1.86141 1.14283 1.35993 1.84835 1.22762 0.93383 0.82960 0.97277 0.91139 1.22327 1.02961 1.01634 0.95673 1.19134 0.90180 0.96804 0.94732 1.21457 0.92510 1.43381 0.99489 0.92945 1.25763 0.95032 0.95929 1.02281 1.70049 0.98237 1.49753 1.38818 0.85633 0.77875 0.78720 0.79988 1.20233 1.20495 1.19162 1.20566 0.93507 0.97802 1.17948 0.91151 0.85911 0.90771 0.81541 0.83109 0.87530 0.91982 0.91044 0.89864 0.97653 0.95363 0.92726 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.32 -7.09 10.48 -89.80 -0.94 -8.03 16 3 C 0.20 5.20 6.69 22.64 0.15 5.35 16 4 C -0.26 -5.62 8.96 22.10 0.20 -5.43 16 5 C 0.02 0.45 9.53 22.32 0.21 0.66 16 6 C -0.29 -9.38 5.88 -20.07 -0.12 -9.50 16 7 C 0.40 13.75 11.18 69.97 0.78 14.53 16 8 O -0.51 -18.99 17.15 -3.20 -0.05 -19.05 16 9 C 0.22 7.65 6.62 22.90 0.15 7.80 16 10 O -0.30 -11.89 8.73 -89.20 -0.78 -12.67 16 11 C 0.09 3.56 2.17 30.59 0.07 3.63 16 12 H 0.07 2.69 6.32 -2.39 -0.02 2.67 16 13 C -0.17 -5.22 9.17 71.98 0.66 -4.56 16 14 C 0.03 1.42 4.68 29.85 0.14 1.56 16 15 C -0.53 -29.37 8.88 25.60 0.23 -29.15 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 19 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.28 -8.47 8.17 22.43 0.18 -8.28 16 24 H 0.07 0.67 7.63 -2.39 -0.02 0.65 16 25 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.17 2.36 6.26 -2.91 -0.02 2.34 16 28 H 0.15 3.49 7.64 -2.91 -0.02 3.46 16 29 H 0.11 3.66 7.63 -2.91 -0.02 3.64 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 1.92 6.91 -2.39 -0.02 1.90 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.15 4.32 5.43 -2.91 -0.02 4.30 16 Total: -1.00 -67.13 309.95 5.85 -61.28 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.08 Total: 7.99 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.23 Total: -21.21 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.77 Total: -39.75 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.13 5.85 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.175 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds