Wall clock time and date at job start Mon Mar 30 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36000 * 116.99492 * 2 1 4 4 C 1.38464 * 119.99808 * 0.25910 * 3 2 1 5 5 C 1.38576 * 120.40350 * 180.30162 * 4 3 2 6 6 C 1.37681 * 120.37951 * 359.71694 * 5 4 3 7 7 C 1.40062 * 119.97673 * 0.02562 * 6 5 4 8 8 C 1.46810 * 120.19866 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99554 * 359.97438 * 8 7 6 10 10 C 1.39133 * 119.98953 * 179.97438 * 3 2 1 11 11 O 1.35695 * 120.18796 * 359.97438 * 10 3 2 12 12 C 1.42899 * 116.99774 * 269.72319 * 11 10 3 13 13 H 1.09004 * 109.47340 * 29.99543 * 12 11 10 14 14 C 1.53003 * 109.47023 * 270.00019 * 12 11 10 15 15 C 1.53002 * 109.47120 * 149.99986 * 12 11 10 16 16 C 1.50693 * 109.46873 * 294.99577 * 15 12 11 17 17 H 1.07996 * 120.00383 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99699 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00283 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47298 * 89.99673 * 20 18 16 22 22 H 1.48503 * 109.47406 * 209.99895 * 20 18 16 23 23 H 1.48501 * 109.47099 * 329.99827 * 20 18 16 24 24 H 1.09000 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47273 * 299.99699 * 1 2 3 26 26 H 1.09004 * 109.47062 * 59.99878 * 1 2 3 27 27 H 1.07993 * 119.79630 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.81249 * 179.69654 * 5 4 3 29 29 H 1.08009 * 120.00932 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.99811 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46988 * 59.99991 * 14 12 11 32 32 H 1.08998 * 109.47329 * 180.02562 * 14 12 11 33 33 H 1.09004 * 109.46674 * 299.99932 * 14 12 11 34 34 H 1.09000 * 109.47081 * 55.00098 * 15 12 11 35 35 H 1.09002 * 109.46670 * 174.99967 * 15 12 11 36 36 H 0.97001 * 120.00298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3730 0.0054 5 6 1.9123 3.6122 -0.0008 6 6 3.2861 3.7032 -0.0066 7 6 4.0646 2.5389 -0.0068 8 6 5.5299 2.6303 -0.0124 9 8 6.0697 3.7165 -0.0174 10 6 3.4358 1.2845 0.0005 11 8 4.1785 0.1488 0.0016 12 6 4.5381 -0.3899 1.2753 13 1 3.7670 -0.1430 2.0052 14 6 5.8738 0.2074 1.7230 15 6 4.6700 -1.9104 1.1672 16 6 3.3251 -2.5096 0.8463 17 1 2.4626 -1.8700 0.7306 18 6 3.1957 -3.8745 0.7004 19 7 4.2460 -4.6534 0.8408 20 14 1.5287 -4.6174 0.3020 21 1 1.3602 -4.6939 -1.1715 22 1 1.4435 -5.9820 0.8814 23 1 0.4569 -3.7668 0.8792 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2139 2.3125 0.0101 28 1 1.3147 4.5117 -0.0015 29 1 3.7633 4.6722 -0.0119 30 1 6.1270 1.7304 -0.0121 31 1 5.7798 1.2906 1.8000 32 1 6.1484 -0.2039 2.6943 33 1 6.6449 -0.0395 0.9931 34 1 5.3766 -2.1583 0.3752 35 1 5.0301 -2.3120 2.1144 36 1 4.1549 -5.6137 0.7385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695807614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:59 Heat of formation + Delta-G solvation = -84.684928 kcal Electronic energy + Delta-G solvation = -20421.245928 eV Core-core repulsion = 17257.774329 eV Total energy + Delta-G solvation = -3163.471599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47506 -38.79412 -37.87359 -36.61139 -33.41450 -31.63250 -30.67662 -29.45251 -27.59457 -27.09775 -24.42729 -23.49307 -22.13431 -20.79420 -20.21827 -18.12043 -17.05060 -16.82917 -16.28811 -15.56088 -15.51532 -14.98711 -14.73758 -14.56711 -14.22355 -13.98480 -13.59611 -13.01919 -12.78611 -12.52906 -12.16250 -11.93861 -11.79756 -11.60780 -11.37720 -11.13039 -10.94442 -10.77483 -10.63352 -10.28015 -9.87831 -9.48000 -9.14135 -8.87786 -8.78256 -8.31336 -7.94097 -5.93140 -3.91327 0.61797 1.41259 2.52129 3.34703 3.40337 3.41282 3.43699 3.65224 4.23297 4.42266 4.51778 4.81178 5.03144 5.21424 5.28005 5.30024 5.38441 5.44441 5.52545 5.56990 5.64709 5.70723 5.79364 5.94353 6.16733 6.22405 6.25002 6.41006 6.58041 6.61804 6.77016 7.39255 7.49919 7.61537 7.67960 8.08723 8.19834 8.49504 9.17306 9.70678 11.19240 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.007366 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.971934 B = 3800.375694 C = 5026.975462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.277 6.277 3 C 0.098 3.902 4 C -0.173 4.173 5 C -0.112 4.112 6 C -0.091 4.091 7 C -0.188 4.188 8 C 0.386 3.614 9 O -0.471 6.471 10 C 0.139 3.861 11 O -0.307 6.307 12 C 0.100 3.900 13 H 0.053 0.947 14 C -0.183 4.183 15 C 0.024 3.976 16 C -0.505 4.505 17 H 0.074 0.926 18 C 0.053 3.947 19 N -0.902 5.902 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 13.539 -0.270 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.188 6.188 3 C 0.051 3.949 4 C -0.192 4.192 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.190 4.190 8 C 0.246 3.754 9 O -0.345 6.345 10 C 0.092 3.908 11 O -0.224 6.224 12 C 0.046 3.954 13 H 0.072 0.928 14 C -0.241 4.241 15 C -0.013 4.013 16 C -0.543 4.543 17 H 0.092 0.908 18 C -0.147 4.147 19 N -0.543 5.543 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.200 1.200 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.016 13.605 -0.416 14.506 hybrid contribution -1.419 -0.439 -0.092 1.489 sum -6.436 13.166 -0.509 14.664 Atomic orbital electron populations 1.23099 0.79325 1.04294 1.00474 1.86502 1.20292 1.24458 1.87594 1.19530 0.91944 0.85530 0.97850 1.21384 1.00238 0.92011 1.05531 1.20806 0.94388 0.96944 1.00827 1.21142 0.93367 0.97717 0.98733 1.21028 0.97190 0.92734 1.08044 1.24180 0.88765 0.93225 0.69233 1.90475 1.75077 1.33092 1.35872 1.18404 0.87048 0.86852 0.98465 1.86131 1.68903 1.36307 1.31017 1.22813 0.93295 0.97557 0.81736 0.92843 1.22649 0.99576 0.99406 1.02431 1.19295 0.98607 0.85172 0.98203 1.21390 0.94938 0.91768 1.46206 0.90788 1.24979 0.96314 0.97422 0.95936 1.69955 1.28964 1.04179 1.51188 0.86625 0.84807 0.78219 0.78466 1.20816 1.21590 1.20044 0.88058 0.92981 0.93020 0.84957 0.85414 0.84917 0.86742 0.93912 0.91038 0.91522 0.95352 0.94671 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.28 -5.10 8.39 -34.30 -0.29 -5.39 16 3 C 0.10 1.65 6.69 -39.17 -0.26 1.39 16 4 C -0.17 -2.26 9.03 -39.37 -0.36 -2.61 16 5 C -0.11 -1.33 10.02 -39.66 -0.40 -1.72 16 6 C -0.09 -1.23 9.59 -39.10 -0.37 -1.61 16 7 C -0.19 -2.96 5.84 -104.97 -0.61 -3.58 16 8 C 0.39 5.97 9.10 34.20 0.31 6.28 16 9 O -0.47 -7.99 17.16 5.55 0.10 -7.89 16 10 C 0.14 2.48 5.59 -38.47 -0.22 2.27 16 11 O -0.31 -6.32 8.58 -33.35 -0.29 -6.61 16 12 C 0.10 2.04 2.72 -26.73 -0.07 1.97 16 13 H 0.05 1.10 7.91 -51.93 -0.41 0.69 16 14 C -0.18 -3.00 7.95 37.16 0.30 -2.71 16 15 C 0.02 0.60 4.68 -27.89 -0.13 0.47 16 16 C -0.50 -13.93 8.88 -34.44 -0.31 -14.24 16 17 H 0.07 1.99 5.75 -52.49 -0.30 1.69 16 18 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 19 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.05 0.57 7.64 -51.93 -0.40 0.18 16 26 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 27 H 0.13 1.36 6.26 -52.49 -0.33 1.03 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.13 1.63 7.65 -52.48 -0.40 1.23 16 30 H 0.12 1.68 5.38 -52.49 -0.28 1.40 16 31 H 0.04 0.62 5.67 -51.93 -0.29 0.33 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -31.89 304.30 -5.87 -37.77 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.47 Total: -1.53 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.23 Total: -11.38 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.48 Total: -19.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.89 -5.87 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.918 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds