Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36000 * 116.99492 * 2 1 4 4 C 1.38464 * 119.99808 * 0.25910 * 3 2 1 5 5 C 1.38576 * 120.40350 * 180.30162 * 4 3 2 6 6 C 1.37681 * 120.37951 * 359.71694 * 5 4 3 7 7 C 1.40062 * 119.97673 * 0.02562 * 6 5 4 8 8 C 1.46810 * 120.19866 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99554 * 359.97438 * 8 7 6 10 10 C 1.39133 * 119.98953 * 179.97438 * 3 2 1 11 11 O 1.35695 * 120.18796 * 359.97438 * 10 3 2 12 12 C 1.42899 * 116.99774 * 269.72319 * 11 10 3 13 13 H 1.09004 * 109.47340 * 29.99543 * 12 11 10 14 14 C 1.53003 * 109.47023 * 270.00019 * 12 11 10 15 15 C 1.53002 * 109.47120 * 149.99986 * 12 11 10 16 16 C 1.50693 * 109.46873 * 294.99577 * 15 12 11 17 17 H 1.07996 * 120.00383 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99699 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00283 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47298 * 89.99673 * 20 18 16 22 22 H 1.48503 * 109.47406 * 209.99895 * 20 18 16 23 23 H 1.48501 * 109.47099 * 329.99827 * 20 18 16 24 24 H 1.09000 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47273 * 299.99699 * 1 2 3 26 26 H 1.09004 * 109.47062 * 59.99878 * 1 2 3 27 27 H 1.07993 * 119.79630 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.81249 * 179.69654 * 5 4 3 29 29 H 1.08009 * 120.00932 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.99811 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46988 * 59.99991 * 14 12 11 32 32 H 1.08998 * 109.47329 * 180.02562 * 14 12 11 33 33 H 1.09004 * 109.46674 * 299.99932 * 14 12 11 34 34 H 1.09000 * 109.47081 * 55.00098 * 15 12 11 35 35 H 1.09002 * 109.46670 * 174.99967 * 15 12 11 36 36 H 0.97001 * 120.00298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3730 0.0054 5 6 1.9123 3.6122 -0.0008 6 6 3.2861 3.7032 -0.0066 7 6 4.0646 2.5389 -0.0068 8 6 5.5299 2.6303 -0.0124 9 8 6.0697 3.7165 -0.0174 10 6 3.4358 1.2845 0.0005 11 8 4.1785 0.1488 0.0016 12 6 4.5381 -0.3899 1.2753 13 1 3.7670 -0.1430 2.0052 14 6 5.8738 0.2074 1.7230 15 6 4.6700 -1.9104 1.1672 16 6 3.3251 -2.5096 0.8463 17 1 2.4626 -1.8700 0.7306 18 6 3.1957 -3.8745 0.7004 19 7 4.2460 -4.6534 0.8408 20 14 1.5287 -4.6174 0.3020 21 1 1.3602 -4.6939 -1.1715 22 1 1.4435 -5.9820 0.8814 23 1 0.4569 -3.7668 0.8792 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2139 2.3125 0.0101 28 1 1.3147 4.5117 -0.0015 29 1 3.7633 4.6722 -0.0119 30 1 6.1270 1.7304 -0.0121 31 1 5.7798 1.2906 1.8000 32 1 6.1484 -0.2039 2.6943 33 1 6.6449 -0.0395 0.9931 34 1 5.3766 -2.1583 0.3752 35 1 5.0301 -2.3120 2.1144 36 1 4.1549 -5.6137 0.7385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695807614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -104.186120 kcal Electronic energy + Delta-G solvation = -20422.091563 eV Core-core repulsion = 17257.774329 eV Total energy + Delta-G solvation = -3164.317234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68680 -40.01952 -39.27618 -37.78980 -35.33167 -33.39289 -31.82938 -30.62314 -29.38229 -28.21035 -25.64708 -25.25624 -23.49646 -22.11309 -21.65544 -19.36847 -18.48996 -18.22834 -17.99199 -16.82637 -16.67957 -16.51364 -16.15202 -15.80837 -15.63319 -15.29504 -15.01981 -14.48706 -14.14234 -13.89234 -13.56508 -13.33703 -13.25815 -13.09456 -12.93471 -12.63432 -12.45705 -12.17734 -12.08911 -11.99256 -11.41084 -11.14710 -10.96176 -10.50941 -10.45313 -9.91686 -9.11906 -8.09937 -6.14776 -0.54072 0.29008 1.35482 1.40266 1.43007 1.52459 2.32641 2.47079 2.48405 2.96135 3.25780 3.27724 3.84926 3.97842 4.12020 4.13273 4.25061 4.32296 4.34462 4.40542 4.42340 4.46839 4.53708 4.73338 4.83230 5.04905 5.11728 5.18172 5.20909 5.35128 5.48283 5.58516 5.64547 5.92023 6.26550 6.32839 6.39144 6.81801 7.01996 7.51280 9.02748 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.007366 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.971934 B = 3800.375694 C = 5026.975462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.077 3.923 4 C -0.159 4.159 5 C -0.093 4.093 6 C -0.091 4.091 7 C -0.195 4.195 8 C 0.391 3.609 9 O -0.487 6.487 10 C 0.100 3.900 11 O -0.329 6.329 12 C 0.110 3.890 13 H 0.046 0.954 14 C -0.174 4.174 15 C 0.026 3.974 16 C -0.516 4.516 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.941 5.941 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.256 1.256 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.069 0.931 34 H -0.002 1.002 35 H 0.018 0.982 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 15.912 -0.323 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.031 3.969 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.197 4.197 8 C 0.252 3.748 9 O -0.363 6.363 10 C 0.055 3.945 11 O -0.246 6.246 12 C 0.056 3.944 13 H 0.065 0.935 14 C -0.231 4.231 15 C -0.011 4.011 16 C -0.555 4.555 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.583 5.583 20 Si 0.779 3.221 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.180 1.180 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.183 0.817 28 H 0.190 0.810 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.016 0.984 35 H 0.036 0.964 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.341 16.000 -0.467 17.610 hybrid contribution -0.765 -1.072 -0.103 1.321 sum -8.106 14.928 -0.571 16.997 Atomic orbital electron populations 1.23348 0.77148 1.04727 1.02781 1.86403 1.22863 1.26005 1.88144 1.19767 0.91833 0.86349 0.98976 1.21768 1.01707 0.90982 1.03316 1.21306 0.93939 0.98072 0.97759 1.21455 0.94283 0.97406 0.97803 1.21057 0.97247 0.92814 1.08552 1.24241 0.89052 0.93028 0.68453 1.90466 1.75348 1.33541 1.36902 1.18680 0.87736 0.86434 1.01672 1.86065 1.69786 1.38062 1.30734 1.22438 0.95136 0.94684 0.82181 0.93540 1.22540 0.97356 1.00413 1.02802 1.19150 0.96862 0.89019 0.96040 1.21824 0.96104 0.92192 1.45332 0.90288 1.25868 1.00154 0.98071 0.95980 1.70095 1.31237 1.04365 1.52575 0.85608 0.80737 0.77510 0.78206 1.20614 1.21304 1.17987 0.88745 0.90753 0.90487 0.81683 0.81012 0.83427 0.86400 0.91929 0.90117 0.91224 0.98355 0.96376 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.81 113.37 1.11 1.46 16 2 O -0.32 -11.60 8.39 -79.62 -0.67 -12.27 16 3 C 0.08 2.49 6.69 22.54 0.15 2.64 16 4 C -0.16 -3.55 9.03 22.40 0.20 -3.35 16 5 C -0.09 -1.78 10.02 22.22 0.22 -1.56 16 6 C -0.09 -2.18 9.59 22.58 0.22 -1.96 16 7 C -0.20 -5.89 5.84 -20.09 -0.12 -6.01 16 8 C 0.39 11.80 9.10 70.06 0.64 12.44 16 9 O -0.49 -15.94 17.16 -3.07 -0.05 -15.99 16 10 C 0.10 3.56 5.59 22.99 0.13 3.69 16 11 O -0.33 -13.92 8.58 -76.22 -0.65 -14.58 16 12 C 0.11 4.62 2.72 30.60 0.08 4.71 16 13 H 0.05 1.97 7.91 -2.38 -0.02 1.95 16 14 C -0.17 -5.74 7.95 71.98 0.57 -5.17 16 15 C 0.03 1.38 4.68 29.85 0.14 1.52 16 16 C -0.52 -29.36 8.88 25.60 0.23 -29.13 16 17 H 0.08 4.35 5.75 -2.91 -0.02 4.33 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 20 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.07 1.41 7.64 -2.39 -0.02 1.39 16 26 H 0.08 1.41 7.67 -2.39 -0.02 1.40 16 27 H 0.17 2.54 6.26 -2.91 -0.02 2.52 16 28 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 3.10 7.65 -2.91 -0.02 3.08 16 30 H 0.12 3.46 5.38 -2.91 -0.02 3.45 16 31 H 0.06 1.80 5.67 -2.39 -0.01 1.79 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.23 7.78 -2.38 -0.02 2.21 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.49 304.30 6.06 -65.42 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.09 Total: 8.67 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.04 Total: -20.54 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.37 Total: -42.84 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.49 6.06 -65.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.762 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds