Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35989 * 116.99950 * 2 1 4 4 C 1.38033 * 119.99175 * 0.28085 * 3 2 1 5 5 C 1.40044 * 119.82404 * 180.29053 * 4 3 2 6 6 C 1.46856 * 120.09576 * 179.71985 * 5 4 3 7 7 O 1.21297 * 120.00345 * 359.97438 * 6 5 4 8 8 C 1.40007 * 119.80404 * 359.70220 * 5 4 3 9 9 C 1.37678 * 119.98073 * 359.97438 * 8 5 4 10 10 C 1.38917 * 120.17225 * 0.02725 * 9 8 5 11 11 O 1.35752 * 119.89869 * 179.97438 * 10 9 8 12 12 C 1.42892 * 117.00183 * 354.53182 * 11 10 9 13 13 H 1.09003 * 109.47075 * 324.88884 * 12 11 10 14 14 C 1.52997 * 109.47083 * 84.89201 * 12 11 10 15 15 C 1.53006 * 109.47530 * 204.89147 * 12 11 10 16 16 C 1.50700 * 109.46701 * 64.99906 * 15 12 11 17 17 H 1.07996 * 120.00658 * 0.02562 * 16 15 12 18 18 C 1.37886 * 119.99613 * 179.72792 * 16 15 12 19 19 N 1.31508 * 120.00130 * 0.27438 * 18 16 15 20 20 Si 1.86801 * 119.99635 * 180.27484 * 18 16 15 21 21 H 1.48500 * 109.46910 * 90.00130 * 20 18 16 22 22 H 1.48498 * 109.46736 * 209.99763 * 20 18 16 23 23 H 1.48501 * 109.47434 * 329.99961 * 20 18 16 24 24 H 1.08994 * 109.47639 * 299.99808 * 1 2 3 25 25 H 1.09003 * 109.46987 * 60.00071 * 1 2 3 26 26 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.08848 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.99699 * 179.97438 * 6 5 4 29 29 H 1.08008 * 120.01046 * 179.97438 * 8 5 4 30 30 H 1.07996 * 119.91797 * 180.02562 * 9 8 5 31 31 H 1.08993 * 109.47265 * 300.00057 * 14 12 11 32 32 H 1.09001 * 109.46995 * 60.00195 * 14 12 11 33 33 H 1.09004 * 109.47393 * 179.97438 * 14 12 11 34 34 H 1.09002 * 109.46627 * 305.00286 * 15 12 11 35 35 H 1.09000 * 109.47596 * 184.99914 * 15 12 11 36 36 H 0.97002 * 120.00121 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2944 2.3692 0.0059 5 6 1.9338 3.6151 -0.0003 6 6 1.1396 4.8504 -0.0004 7 8 -0.0720 4.7926 0.0045 8 6 3.3324 3.6796 -0.0061 9 6 4.0746 2.5200 -0.0052 10 6 3.4394 1.2845 0.0009 11 8 4.1766 0.1446 0.0013 12 6 5.5926 0.2878 -0.1260 13 1 5.8152 1.1271 -0.7850 14 6 6.2052 0.5449 1.2521 15 6 6.1839 -0.9943 -0.7158 16 6 5.6742 -1.1822 -2.1214 17 1 4.9966 -0.4594 -2.5514 18 6 6.0777 -2.2738 -2.8609 19 7 6.9031 -3.1538 -2.3376 20 14 5.4518 -2.5027 -4.6060 21 1 6.3755 -1.8310 -5.5551 22 1 5.3856 -3.9522 -4.9219 23 1 4.0971 -1.9070 -4.7282 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2159 2.3142 0.0109 28 1 1.6344 5.8105 -0.0047 29 1 3.8290 4.6387 -0.0113 30 1 5.1533 2.5708 -0.0092 31 1 5.7841 1.4582 1.6723 32 1 5.9827 -0.2944 1.9110 33 1 7.2855 0.6537 1.1551 34 1 5.8864 -1.8463 -0.1044 35 1 7.2713 -0.9197 -0.7306 36 1 7.1867 -3.9219 -2.8577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -110.903922 kcal Electronic energy + Delta-G solvation = -19737.813644 eV Core-core repulsion = 16573.205104 eV Total energy + Delta-G solvation = -3164.608540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67919 -40.03779 -39.61070 -37.61275 -35.46764 -33.49207 -31.48429 -31.07832 -29.37152 -28.37270 -25.73794 -24.96209 -23.68940 -22.44278 -21.26171 -19.59421 -18.56208 -18.43052 -17.64654 -16.87956 -16.60894 -16.54037 -16.02407 -16.00334 -15.65504 -15.34840 -15.17492 -14.45487 -14.19640 -13.82045 -13.74162 -13.46599 -13.34694 -13.15634 -12.83005 -12.65933 -12.49820 -12.37213 -12.09534 -11.99867 -11.77657 -11.30619 -11.08240 -10.75634 -10.59156 -9.77890 -8.82053 -8.21997 -6.30404 -0.29806 0.34422 1.35966 1.38031 1.48914 1.53519 2.34139 2.35514 2.39102 2.79775 3.12646 3.39486 3.79155 3.93895 4.04943 4.13895 4.20047 4.27496 4.30954 4.34151 4.45400 4.52286 4.64394 4.68704 4.80875 5.01052 5.10493 5.20796 5.22844 5.27792 5.38053 5.46913 5.68094 5.75790 6.15659 6.24525 6.55405 6.71574 6.81311 7.36896 8.89733 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.005360 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.022147 B = 5222.711582 C = 5678.385079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.048 3.952 4 C -0.122 4.122 5 C -0.219 4.219 6 C 0.401 3.599 7 O -0.513 6.513 8 C -0.036 4.036 9 C -0.203 4.203 10 C 0.123 3.877 11 O -0.311 6.311 12 C 0.090 3.910 13 H 0.076 0.924 14 C -0.167 4.167 15 C 0.028 3.972 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.186 0.814 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.085 0.915 34 H -0.006 1.006 35 H 0.030 0.970 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 16.219 6.089 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.004 3.996 4 C -0.141 4.141 5 C -0.220 4.220 6 C 0.263 3.737 7 O -0.390 6.390 8 C -0.054 4.054 9 C -0.222 4.222 10 C 0.075 3.925 11 O -0.224 6.224 12 C 0.034 3.966 13 H 0.094 0.906 14 C -0.225 4.225 15 C -0.009 4.009 16 C -0.567 4.567 17 H 0.066 0.934 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.200 1.200 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.162 0.838 28 H 0.179 0.821 29 H 0.204 0.796 30 H 0.175 0.825 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.013 0.987 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.128 15.620 6.074 18.626 hybrid contribution -0.192 -0.927 -0.883 1.295 sum -8.320 14.693 5.191 17.665 Atomic orbital electron populations 1.23286 0.76910 1.05261 1.01905 1.86209 1.22987 1.26548 1.89542 1.18521 0.89674 0.85866 1.05586 1.21396 1.00442 0.90927 1.01303 1.20955 0.95555 0.95270 1.10214 1.24587 0.87813 0.93634 0.67632 1.90512 1.19517 1.91099 1.37834 1.21535 0.91540 0.99331 0.92974 1.21453 1.02038 0.90471 1.08228 1.19328 0.89015 0.87790 0.96343 1.86265 1.21135 1.29173 1.85862 1.22729 0.76481 1.00104 0.97248 0.90647 1.22326 1.02182 1.02353 0.95597 1.19127 0.95398 0.91744 0.94651 1.21433 1.27279 1.08451 0.99587 0.93351 1.25817 0.95298 0.95565 1.02598 1.70054 1.34922 1.13232 1.38819 0.85570 0.78793 0.77467 0.79987 1.19042 1.20569 1.19961 0.91520 0.92225 0.86798 0.83848 0.82053 0.79643 0.82519 0.90366 0.93009 0.89571 0.98723 0.95193 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.64 16 2 O -0.34 -12.64 10.27 -79.40 -0.82 -13.46 16 3 C 0.05 1.71 6.69 22.52 0.15 1.86 16 4 C -0.12 -3.45 8.58 22.66 0.19 -3.26 16 5 C -0.22 -4.83 5.87 -20.16 -0.12 -4.95 16 6 C 0.40 6.91 11.44 70.08 0.80 7.71 16 7 O -0.51 -13.29 17.16 -3.08 -0.05 -13.34 16 8 C -0.04 -0.68 9.78 22.57 0.22 -0.46 16 9 C -0.20 -5.45 8.21 22.30 0.18 -5.27 16 10 C 0.12 4.48 6.62 22.73 0.15 4.63 16 11 O -0.31 -13.83 9.32 -76.75 -0.72 -14.55 16 12 C 0.09 3.66 2.17 30.60 0.07 3.73 16 13 H 0.08 2.84 6.30 -2.39 -0.02 2.83 16 14 C -0.17 -5.28 9.16 71.98 0.66 -4.62 16 15 C 0.03 1.46 4.68 29.85 0.14 1.60 16 16 C -0.53 -30.75 8.88 25.60 0.23 -30.52 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.30 5.46 84.66 0.46 0.76 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 20 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 24 H 0.07 1.43 7.65 -2.39 -0.02 1.42 16 25 H 0.06 1.38 7.67 -2.39 -0.02 1.36 16 26 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.14 3.81 5.87 -2.91 -0.02 3.79 16 28 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 29 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.16 3.71 5.39 -2.91 -0.02 3.69 16 31 H 0.08 2.01 6.89 -2.39 -0.02 1.99 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.40 8.14 -2.38 -0.02 2.39 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -76.74 310.90 6.06 -70.68 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.08 Total: 6.62 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.25 Total: -27.16 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.58 Total: -41.35 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.74 6.06 -70.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.220 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds