Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47030 * 2 1 4 4 C 1.52999 * 109.46667 * 240.00237 * 2 1 3 5 5 C 1.50696 * 109.46964 * 174.99920 * 4 2 1 6 6 H 1.08004 * 120.00064 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00102 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00073 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47225 * 90.00033 * 9 7 5 11 11 H 1.48505 * 109.47026 * 209.99877 * 9 7 5 12 12 H 1.48493 * 109.47115 * 329.99913 * 9 7 5 13 13 O 1.42893 * 109.47240 * 120.00692 * 2 1 3 14 14 C 1.35900 * 116.99912 * 275.16423 * 13 2 1 15 15 C 1.38787 * 119.88328 * 5.45607 * 14 13 2 16 16 C 1.38255 * 119.71097 * 179.77641 * 15 14 13 17 17 C 1.37793 * 120.04821 * 359.97438 * 16 15 14 18 18 C 1.38935 * 120.87285 * 0.38692 * 17 16 15 19 19 C 1.38423 * 119.88322 * 185.44233 * 14 13 2 20 20 O 1.36144 * 111.21576 * 179.20382 * 18 17 16 21 21 C 1.43763 * 109.22699 * 19.20145 * 20 18 17 22 22 C 1.51660 * 132.09632 * 180.99673 * 17 16 15 23 23 H 1.09007 * 110.95584 * 282.36900 * 22 17 16 24 24 O 1.42903 * 110.95197 * 46.03264 * 22 17 16 25 25 H 1.08996 * 109.47695 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46992 * 299.99865 * 1 2 3 27 27 H 1.09001 * 109.47521 * 59.99260 * 1 2 3 28 28 H 1.09001 * 109.47636 * 295.00369 * 4 2 1 29 29 H 1.09003 * 109.46960 * 55.00455 * 4 2 1 30 30 H 0.96998 * 120.00580 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.14398 * 359.75989 * 15 14 13 32 32 H 1.07996 * 119.97458 * 179.70485 * 16 15 14 33 33 H 1.07995 * 119.90125 * 0.06427 * 19 14 13 34 34 H 1.09003 * 110.75185 * 90.49505 * 21 20 18 35 35 H 1.09000 * 110.74901 * 213.83656 * 21 20 18 36 36 H 0.96693 * 114.00378 * 174.01895 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5417 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5393 7 6 4.2301 -1.1926 -2.3585 8 7 3.5761 -1.8359 -3.3007 9 14 6.0919 -1.0614 -2.4369 10 1 6.6998 -2.2147 -1.7259 11 1 6.5293 -1.0684 -3.8561 12 1 6.5266 0.2031 -1.7912 13 8 2.0063 -0.6737 1.1666 14 6 2.1092 0.0615 2.3049 15 6 1.6522 1.3718 2.3254 16 6 1.7544 2.1151 3.4867 17 6 2.3075 1.5552 4.6178 18 6 2.7759 0.2473 4.6098 19 6 2.6692 -0.4992 3.4398 20 8 3.2956 -0.0973 5.8201 21 6 2.8012 0.8069 6.8224 22 6 2.5327 2.0992 6.0154 23 1 3.3982 2.7614 6.0413 24 8 1.3660 2.7690 6.4973 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7515 -1.7715 -1.2058 29 1 1.6053 -0.2616 -2.1370 30 1 4.0603 -2.2421 -4.0366 31 1 1.2189 1.8090 1.4380 32 1 1.4045 3.1366 3.5060 33 1 3.0239 -1.5190 3.4177 34 1 1.8789 0.4282 7.2630 35 1 3.5543 0.9809 7.5909 36 1 1.4285 3.0540 7.4191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -94.667817 kcal Electronic energy + Delta-G solvation = -19641.185023 eV Core-core repulsion = 16477.280533 eV Total energy + Delta-G solvation = -3163.904489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19730 -39.26748 -36.73427 -36.24334 -33.46551 -31.82624 -30.75021 -29.82075 -28.17173 -27.45602 -23.61781 -23.30725 -22.48587 -21.44439 -20.05724 -17.94835 -17.88783 -16.78178 -16.48354 -16.08446 -15.54419 -15.11677 -14.62194 -14.43540 -14.25328 -14.04534 -13.40081 -13.17977 -12.92126 -12.60132 -12.36109 -11.94371 -11.78462 -11.55737 -11.36358 -11.14115 -10.98052 -10.74606 -10.62300 -10.48605 -10.22983 -9.96666 -9.38546 -9.11949 -8.39381 -8.34874 -7.74142 -6.01852 -4.03337 1.49094 1.56217 3.00841 3.33945 3.39800 3.43774 3.74895 3.88789 4.20299 4.27590 4.46580 4.46972 4.77898 5.01412 5.17480 5.34907 5.36391 5.37697 5.40715 5.62567 5.72834 5.78401 5.87937 6.06541 6.19497 6.33902 6.41892 6.53803 6.55796 6.65968 6.77902 7.16140 7.26713 7.48131 7.57597 7.94649 8.09032 8.35322 9.00310 9.60288 11.09560 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.004662 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.925781 B = 6005.159547 C = 6599.064399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.066 0.934 4 C 0.025 3.975 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.285 6.285 14 C 0.194 3.806 15 C -0.243 4.243 16 C -0.011 4.011 17 C -0.230 4.230 18 C 0.146 3.854 19 C -0.183 4.183 20 O -0.299 6.299 21 C 0.020 3.980 22 C 0.126 3.874 23 H 0.081 0.919 24 O -0.550 6.550 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 8.309 18.319 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.197 6.197 14 C 0.146 3.854 15 C -0.262 4.262 16 C -0.029 4.029 17 C -0.231 4.231 18 C 0.101 3.899 19 C -0.203 4.203 20 O -0.212 6.212 21 C -0.055 4.055 22 C 0.067 3.933 23 H 0.099 0.901 24 O -0.356 6.356 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.289 7.700 17.547 19.636 hybrid contribution 1.129 0.422 0.486 1.300 sum -3.160 8.123 18.033 20.029 Atomic orbital electron populations 1.22425 0.96817 1.02735 1.01615 1.22952 0.91968 0.97266 0.84776 0.91655 1.19281 0.96630 0.96558 0.88680 1.21127 0.91666 1.34605 1.07950 0.92560 1.24969 0.98478 0.95203 0.95621 1.69943 1.35589 1.35994 1.12073 0.86579 0.85724 0.78596 0.77063 1.20569 1.21233 1.19879 1.86281 1.79291 1.38114 1.16015 1.18661 0.90162 0.89646 0.86957 1.21308 1.10114 0.94913 0.99815 1.19983 0.93731 0.99026 0.90148 1.20114 1.12294 0.95135 0.95576 1.18928 0.93033 0.91514 0.86441 1.19208 1.09777 1.01616 0.89661 1.86843 1.64875 1.54640 1.14891 1.24594 1.00893 0.88743 0.91291 1.21729 0.88524 0.92320 0.90680 0.90109 1.86644 1.38764 1.77896 1.32276 0.91843 0.93121 0.91257 0.95212 0.94217 0.92922 0.84401 0.85756 0.84498 0.89800 0.87522 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.17 37.16 0.34 -2.67 16 2 C 0.09 1.77 2.17 -26.73 -0.06 1.71 16 3 H 0.07 1.30 6.31 -51.93 -0.33 0.98 16 4 C 0.03 0.64 4.68 -27.89 -0.13 0.51 16 5 C -0.52 -14.58 8.88 -34.44 -0.31 -14.88 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 O -0.29 -6.12 9.55 -19.42 -0.19 -6.31 16 14 C 0.19 3.65 6.59 -39.31 -0.26 3.39 16 15 C -0.24 -4.00 8.24 -39.37 -0.32 -4.33 16 16 C -0.01 -0.16 10.03 -39.74 -0.40 -0.56 16 17 C -0.23 -3.39 5.98 -104.05 -0.62 -4.02 16 18 C 0.15 2.35 7.03 -38.97 -0.27 2.07 16 19 C -0.18 -3.26 10.00 -39.16 -0.39 -3.65 16 20 O -0.30 -4.28 11.10 -20.20 -0.22 -4.50 16 21 C 0.02 0.20 7.75 38.05 0.29 0.49 16 22 C 0.13 1.36 4.50 -26.52 -0.12 1.24 16 23 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 24 O -0.55 -5.35 13.42 -35.23 -0.47 -5.83 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.76 6.89 -51.93 -0.36 0.40 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.14 2.12 5.42 -52.49 -0.28 1.84 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.38 1.58 9.11 45.56 0.42 2.00 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -32.89 305.55 -6.81 -39.69 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.90 Total: 0.51 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.34 Total: -19.12 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.88 Total: -16.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.89 -6.81 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.974 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds