Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47030 * 2 1 4 4 C 1.52999 * 109.46667 * 240.00237 * 2 1 3 5 5 C 1.50696 * 109.46964 * 174.99920 * 4 2 1 6 6 H 1.08004 * 120.00064 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00102 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00073 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47225 * 90.00033 * 9 7 5 11 11 H 1.48505 * 109.47026 * 209.99877 * 9 7 5 12 12 H 1.48493 * 109.47115 * 329.99913 * 9 7 5 13 13 O 1.42893 * 109.47240 * 120.00692 * 2 1 3 14 14 C 1.35900 * 116.99912 * 275.16423 * 13 2 1 15 15 C 1.38787 * 119.88328 * 5.45607 * 14 13 2 16 16 C 1.38255 * 119.71097 * 179.77641 * 15 14 13 17 17 C 1.37793 * 120.04821 * 359.97438 * 16 15 14 18 18 C 1.38935 * 120.87285 * 0.38692 * 17 16 15 19 19 C 1.38423 * 119.88322 * 185.44233 * 14 13 2 20 20 O 1.36144 * 111.21576 * 179.20382 * 18 17 16 21 21 C 1.43763 * 109.22699 * 19.20145 * 20 18 17 22 22 C 1.51660 * 132.09632 * 180.99673 * 17 16 15 23 23 H 1.09007 * 110.95584 * 282.36900 * 22 17 16 24 24 O 1.42903 * 110.95197 * 46.03264 * 22 17 16 25 25 H 1.08996 * 109.47695 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46992 * 299.99865 * 1 2 3 27 27 H 1.09001 * 109.47521 * 59.99260 * 1 2 3 28 28 H 1.09001 * 109.47636 * 295.00369 * 4 2 1 29 29 H 1.09003 * 109.46960 * 55.00455 * 4 2 1 30 30 H 0.96998 * 120.00580 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.14398 * 359.75989 * 15 14 13 32 32 H 1.07996 * 119.97458 * 179.70485 * 16 15 14 33 33 H 1.07995 * 119.90125 * 0.06427 * 19 14 13 34 34 H 1.09003 * 110.75185 * 90.49505 * 21 20 18 35 35 H 1.09000 * 110.74901 * 213.83656 * 21 20 18 36 36 H 0.96693 * 114.00378 * 174.01895 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5417 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5393 7 6 4.2301 -1.1926 -2.3585 8 7 3.5761 -1.8359 -3.3007 9 14 6.0919 -1.0614 -2.4369 10 1 6.6998 -2.2147 -1.7259 11 1 6.5293 -1.0684 -3.8561 12 1 6.5266 0.2031 -1.7912 13 8 2.0063 -0.6737 1.1666 14 6 2.1092 0.0615 2.3049 15 6 1.6522 1.3718 2.3254 16 6 1.7544 2.1151 3.4867 17 6 2.3075 1.5552 4.6178 18 6 2.7759 0.2473 4.6098 19 6 2.6692 -0.4992 3.4398 20 8 3.2956 -0.0973 5.8201 21 6 2.8012 0.8069 6.8224 22 6 2.5327 2.0992 6.0154 23 1 3.3982 2.7614 6.0413 24 8 1.3660 2.7690 6.4973 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7515 -1.7715 -1.2058 29 1 1.6053 -0.2616 -2.1370 30 1 4.0603 -2.2421 -4.0366 31 1 1.2189 1.8090 1.4380 32 1 1.4045 3.1366 3.5060 33 1 3.0239 -1.5190 3.4177 34 1 1.8789 0.4282 7.2630 35 1 3.5543 0.9809 7.5909 36 1 1.4285 3.0540 7.4191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -118.287360 kcal Electronic energy + Delta-G solvation = -19642.209243 eV Core-core repulsion = 16477.280533 eV Total energy + Delta-G solvation = -3164.928710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.27762 -40.66970 -37.55807 -37.49987 -35.41777 -33.55587 -31.93057 -31.01479 -29.35875 -29.18618 -25.36628 -24.48812 -23.84732 -22.58526 -21.56129 -19.31877 -18.65549 -18.55739 -17.86173 -17.41006 -16.87877 -16.39749 -16.12794 -15.94244 -15.45106 -15.01444 -14.62289 -14.54681 -14.31251 -13.88683 -13.83145 -13.58890 -13.36158 -13.13464 -12.93282 -12.67058 -12.40828 -12.22885 -12.11548 -11.75735 -11.66532 -11.29609 -11.20518 -10.94479 -10.59636 -9.62609 -9.00758 -8.21900 -6.30840 0.25656 0.31373 1.37620 1.39328 1.49842 1.89510 2.39645 2.54592 2.71549 3.12823 3.29211 3.40927 3.54037 3.87650 4.04912 4.07358 4.15124 4.20417 4.28500 4.44645 4.47456 4.56792 4.66463 4.75519 4.90050 5.01868 5.08232 5.19458 5.24803 5.33496 5.39164 5.44884 5.51276 5.75697 6.04619 6.17930 6.61000 6.80834 6.84287 7.36769 8.89827 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.004662 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.925781 B = 6005.159547 C = 6599.064399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.071 0.929 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.050 0.950 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.266 1.266 13 O -0.317 6.317 14 C 0.165 3.835 15 C -0.245 4.245 16 C -0.010 4.010 17 C -0.232 4.232 18 C 0.141 3.859 19 C -0.206 4.206 20 O -0.315 6.315 21 C 0.017 3.983 22 C 0.134 3.866 23 H 0.103 0.897 24 O -0.563 6.563 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.084 0.916 28 H -0.001 1.001 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 10.402 20.624 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.230 6.230 14 C 0.118 3.882 15 C -0.263 4.263 16 C -0.028 4.028 17 C -0.233 4.233 18 C 0.095 3.905 19 C -0.225 4.225 20 O -0.229 6.229 21 C -0.057 4.057 22 C 0.075 3.925 23 H 0.121 0.879 24 O -0.373 6.373 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.017 0.983 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.165 0.835 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.905 9.813 19.898 22.527 hybrid contribution 0.993 -0.198 -0.059 1.015 sum -2.912 9.615 19.838 22.237 Atomic orbital electron populations 1.22327 0.93863 1.02913 1.03435 1.22685 0.94173 0.96320 0.83055 0.91093 1.19133 0.95492 0.95187 0.91090 1.21467 0.93316 1.34520 1.07792 0.93151 1.25829 1.03374 0.94799 0.95253 1.70053 1.37497 1.36777 1.12692 0.85550 0.79871 0.78767 0.77514 1.20269 1.20148 1.19055 1.86186 1.80519 1.39337 1.16954 1.18848 0.92255 0.90770 0.86292 1.21434 1.09936 0.94016 1.00961 1.20295 0.93040 0.99994 0.89496 1.20693 1.10230 0.94696 0.97693 1.18985 0.92824 0.92024 0.86636 1.19292 1.10825 1.01707 0.90725 1.86826 1.64979 1.56205 1.14919 1.24986 1.02699 0.87320 0.90718 1.21700 0.89447 0.93163 0.88193 0.87909 1.86577 1.38256 1.77782 1.34643 0.92525 0.90898 0.89689 0.98293 0.95267 0.92643 0.83565 0.83065 0.85647 0.88930 0.83539 0.74495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.63 9.17 71.98 0.66 -4.97 16 2 C 0.09 3.93 2.17 30.59 0.07 4.00 16 3 H 0.07 2.87 6.31 -2.39 -0.02 2.85 16 4 C 0.03 1.48 4.68 29.85 0.14 1.62 16 5 C -0.53 -31.05 8.88 25.60 0.23 -30.82 16 6 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 O -0.32 -14.16 9.55 -92.42 -0.88 -15.04 16 14 C 0.17 6.35 6.59 22.45 0.15 6.50 16 15 C -0.24 -7.89 8.24 22.41 0.18 -7.71 16 16 C -0.01 -0.28 10.03 22.17 0.22 -0.06 16 17 C -0.23 -6.32 5.98 -19.50 -0.12 -6.44 16 18 C 0.14 4.43 7.03 22.67 0.16 4.59 16 19 C -0.21 -7.57 10.00 22.54 0.23 -7.34 16 20 O -0.31 -8.49 11.10 -95.19 -1.06 -9.55 16 21 C 0.02 0.27 7.75 72.56 0.56 0.83 16 22 C 0.13 2.36 4.50 30.73 0.14 2.50 16 23 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 24 O -0.56 -8.60 13.42 -148.98 -2.00 -10.60 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 2.11 6.89 -2.39 -0.02 2.09 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.15 4.34 5.42 -2.91 -0.02 4.33 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.40 1.53 9.11 -74.06 -0.67 0.85 16 Total: -1.00 -73.06 305.55 1.87 -71.19 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.42 Total: 9.40 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.08 Total: -36.53 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.44 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -3.94 Total: -35.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.06 1.87 -71.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.100 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds