Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46986 * 240.00672 * 2 1 3 5 5 C 1.50707 * 109.47212 * 175.00249 * 4 2 1 6 6 H 1.07999 * 119.99483 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47288 * 59.99453 * 9 7 5 11 11 H 1.48496 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46808 * 299.99670 * 9 7 5 13 13 O 1.42898 * 109.47186 * 120.00414 * 2 1 3 14 14 C 1.42901 * 113.99983 * 270.00238 * 13 2 1 15 15 C 1.50699 * 109.46861 * 180.02562 * 14 13 2 16 16 C 1.38247 * 119.92634 * 270.01673 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 90.00085 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.08998 * 109.47106 * 299.99503 * 1 2 3 25 25 H 1.08998 * 109.46678 * 59.99611 * 1 2 3 26 26 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47047 * 294.99683 * 4 2 1 28 28 H 1.09001 * 109.47264 * 54.99760 * 4 2 1 29 29 H 0.96996 * 119.99884 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.47053 * 60.00026 * 14 13 2 31 31 H 1.08998 * 109.46527 * 299.99889 * 14 13 2 32 32 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 34 34 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 35 35 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 36 36 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1924 -2.3584 8 7 3.5764 -1.8366 -3.3003 9 14 6.0920 -1.0601 -2.4375 10 1 6.6846 -1.6862 -1.2284 11 1 6.5870 -1.7600 -3.6500 12 1 6.4844 0.3709 -2.4966 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1828 2.2941 15 6 2.7015 -0.6285 3.4609 16 6 1.8015 -1.2002 4.3409 17 6 2.2563 -1.9496 5.4098 18 6 3.6169 -2.1219 5.6067 19 6 4.5235 -1.5459 4.7203 20 6 4.0602 -0.7996 3.6488 21 8 5.7887 -1.8621 5.1234 22 6 5.6600 -2.2928 6.4912 23 8 4.3141 -2.7990 6.5653 24 1 -0.3633 0.5137 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2615 -2.1370 29 1 4.0607 -2.2432 -4.0357 30 1 1.2538 0.6544 2.5589 31 1 2.9320 0.9512 2.0450 32 1 0.7407 -1.0649 4.1904 33 1 1.5509 -2.3996 6.0927 34 1 4.7611 -0.3517 2.9600 35 1 5.7908 -1.4513 7.1716 36 1 6.3786 -3.0817 6.7136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = -89.584384 kcal Electronic energy + Delta-G solvation = -19492.184165 eV Core-core repulsion = 16328.500110 eV Total energy + Delta-G solvation = -3163.684055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15975 -38.52063 -37.07772 -36.30414 -33.27662 -31.74699 -30.56327 -30.12480 -27.34922 -26.44240 -25.09114 -23.09267 -22.93610 -21.74614 -20.11988 -17.94400 -17.60023 -17.38179 -16.38482 -16.16270 -16.01163 -14.81817 -14.66190 -14.46394 -14.10475 -13.82485 -13.61183 -13.09264 -12.98678 -12.92235 -12.51155 -12.08278 -11.83171 -11.71779 -11.32998 -11.25868 -10.93677 -10.72705 -10.65402 -10.57282 -10.07537 -9.42761 -9.14098 -8.80767 -8.62356 -8.30193 -8.04097 -5.93375 -3.93586 1.11084 1.26767 2.72071 3.38172 3.38369 3.42449 3.45744 3.51909 4.49612 4.52293 4.52963 4.55371 4.77586 5.01239 5.13749 5.19384 5.26604 5.44197 5.47911 5.65602 5.75993 5.81216 5.98750 6.04257 6.10160 6.12651 6.24934 6.34273 6.38445 6.62129 6.75633 6.93776 7.11763 7.54336 7.69383 8.03974 8.16701 8.48084 9.09883 9.68634 11.18343 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005374 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.417270 B = 5209.095867 C = 6491.052977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.048 0.952 4 C 0.024 3.976 5 C -0.507 4.507 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 O -0.360 6.360 14 C 0.103 3.897 15 C -0.065 4.065 16 C -0.091 4.091 17 C -0.104 4.104 18 C 0.027 3.973 19 C 0.027 3.973 20 C -0.075 4.075 21 O -0.308 6.308 22 C 0.213 3.787 23 O -0.312 6.312 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 2.996 18.794 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.033 3.967 3 H 0.066 0.934 4 C -0.013 4.013 5 C -0.545 4.545 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 O -0.279 6.279 14 C 0.026 3.974 15 C -0.066 4.066 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.017 4.017 19 C -0.017 4.017 20 C -0.093 4.093 21 O -0.225 6.225 22 C 0.101 3.899 23 O -0.229 6.229 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.606 2.534 18.674 18.913 hybrid contribution 1.252 0.141 0.044 1.261 sum -0.354 2.675 18.718 18.912 Atomic orbital electron populations 1.22334 0.98088 1.01968 1.00554 1.22437 0.91042 0.96219 0.87010 0.93382 1.19245 0.96264 0.96408 0.89383 1.21084 0.91903 1.34038 1.07473 0.92786 1.24977 0.98203 0.95471 0.95824 1.69944 1.35484 1.36251 1.12177 0.86694 0.86075 0.78094 0.77379 1.20219 1.21354 1.20355 1.88107 1.86739 1.33982 1.19088 1.21173 0.98853 0.91838 0.85565 1.19460 0.91737 0.99344 0.96015 1.20835 1.00094 0.96664 0.93279 1.20000 0.90687 1.01496 1.00097 1.19810 0.93942 0.96701 0.91243 1.19727 0.82662 1.00864 0.98418 1.20054 0.95699 0.97803 0.95781 1.87382 1.25221 1.81873 1.27979 1.25580 0.83504 0.98181 0.82607 1.87330 1.21484 1.59638 1.54416 0.94064 0.92137 0.92310 0.95608 0.95149 0.93037 0.93033 0.92617 0.84370 0.84796 0.84287 0.90136 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.53 37.16 0.35 -2.57 16 2 C 0.09 1.87 2.67 -26.73 -0.07 1.80 16 3 H 0.05 0.96 7.79 -51.93 -0.40 0.55 16 4 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 5 C -0.51 -14.50 8.88 -34.44 -0.31 -14.81 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 O -0.36 -7.46 9.72 -35.23 -0.34 -7.80 16 14 C 0.10 1.63 5.87 36.01 0.21 1.84 16 15 C -0.07 -0.99 5.51 -104.62 -0.58 -1.57 16 16 C -0.09 -1.17 9.69 -39.58 -0.38 -1.56 16 17 C -0.10 -1.31 10.06 -39.46 -0.40 -1.71 16 18 C 0.03 0.39 7.15 -39.08 -0.28 0.11 16 19 C 0.03 0.42 7.15 -39.08 -0.28 0.14 16 20 C -0.07 -1.19 9.71 -39.47 -0.38 -1.57 16 21 O -0.31 -4.49 11.40 -45.68 -0.52 -5.01 16 22 C 0.21 2.21 8.89 101.05 0.90 3.10 16 23 O -0.31 -4.11 11.40 -45.70 -0.52 -4.63 16 24 H 0.04 0.59 7.87 -51.93 -0.41 0.18 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 30 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 31 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -33.10 312.49 -7.38 -40.48 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.98 Total: -3.53 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.44 Total: -14.76 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.74 Total: -26.65 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.38 Total: -17.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.10 -7.38 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.106 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds