Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46986 * 240.00672 * 2 1 3 5 5 C 1.50707 * 109.47212 * 175.00249 * 4 2 1 6 6 H 1.07999 * 119.99483 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47288 * 59.99453 * 9 7 5 11 11 H 1.48496 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46808 * 299.99670 * 9 7 5 13 13 O 1.42898 * 109.47186 * 120.00414 * 2 1 3 14 14 C 1.42901 * 113.99983 * 270.00238 * 13 2 1 15 15 C 1.50699 * 109.46861 * 180.02562 * 14 13 2 16 16 C 1.38247 * 119.92634 * 270.01673 * 15 14 13 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 90.00085 * 15 14 13 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.08998 * 109.47106 * 299.99503 * 1 2 3 25 25 H 1.08998 * 109.46678 * 59.99611 * 1 2 3 26 26 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47047 * 294.99683 * 4 2 1 28 28 H 1.09001 * 109.47264 * 54.99760 * 4 2 1 29 29 H 0.96996 * 119.99884 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.47053 * 60.00026 * 14 13 2 31 31 H 1.08998 * 109.46527 * 299.99889 * 14 13 2 32 32 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 34 34 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 35 35 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 36 36 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1924 -2.3584 8 7 3.5764 -1.8366 -3.3003 9 14 6.0920 -1.0601 -2.4375 10 1 6.6846 -1.6862 -1.2284 11 1 6.5870 -1.7600 -3.6500 12 1 6.4844 0.3709 -2.4966 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1828 2.2941 15 6 2.7015 -0.6285 3.4609 16 6 1.8015 -1.2002 4.3409 17 6 2.2563 -1.9496 5.4098 18 6 3.6169 -2.1219 5.6067 19 6 4.5235 -1.5459 4.7203 20 6 4.0602 -0.7996 3.6488 21 8 5.7887 -1.8621 5.1234 22 6 5.6600 -2.2928 6.4912 23 8 4.3141 -2.7990 6.5653 24 1 -0.3633 0.5137 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2615 -2.1370 29 1 4.0607 -2.2432 -4.0357 30 1 1.2538 0.6544 2.5589 31 1 2.9320 0.9512 2.0450 32 1 0.7407 -1.0649 4.1904 33 1 1.5509 -2.3996 6.0927 34 1 4.7611 -0.3517 2.9600 35 1 5.7908 -1.4513 7.1716 36 1 6.3786 -3.0817 6.7136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = -110.571322 kcal Electronic energy + Delta-G solvation = -19493.094227 eV Core-core repulsion = 16328.500110 eV Total energy + Delta-G solvation = -3164.594117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.15323 -39.76033 -38.43534 -37.31555 -35.27471 -33.37309 -31.80107 -31.27698 -29.24621 -27.46156 -26.16307 -25.06459 -23.99836 -22.85116 -21.83383 -18.94166 -18.66320 -18.47369 -18.36643 -17.57392 -17.20354 -16.60403 -16.02436 -15.55903 -15.47447 -14.96899 -14.87583 -14.43428 -14.08919 -14.01849 -13.94684 -13.60552 -13.46228 -13.31797 -13.06918 -12.60472 -12.59404 -12.44146 -12.07542 -11.92899 -11.73355 -11.26792 -11.15654 -10.55203 -10.19462 -9.89297 -9.09431 -8.17337 -6.24968 0.02128 0.19455 1.37214 1.40866 1.47876 1.76487 2.37883 2.41477 2.51173 3.13400 3.26893 3.45179 3.78834 3.88962 4.00161 4.06585 4.20332 4.27416 4.31085 4.40565 4.49807 4.58087 4.62792 4.66432 4.95060 4.98800 5.04366 5.19547 5.24479 5.32326 5.38521 5.47265 5.53292 5.56332 5.83302 6.09198 6.26154 6.63300 6.88177 7.41643 8.94572 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005374 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.417270 B = 5209.095867 C = 6491.052977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.056 0.944 4 C 0.025 3.975 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.263 1.263 13 O -0.390 6.390 14 C 0.100 3.900 15 C -0.082 4.082 16 C -0.082 4.082 17 C -0.100 4.100 18 C 0.021 3.979 19 C 0.008 3.992 20 C -0.098 4.098 21 O -0.332 6.332 22 C 0.204 3.796 23 O -0.321 6.321 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.050 0.950 27 H -0.009 1.009 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 3.519 20.788 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.074 0.926 4 C -0.012 4.012 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.188 1.188 13 O -0.310 6.310 14 C 0.024 3.976 15 C -0.082 4.082 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.023 4.023 19 C -0.036 4.036 20 C -0.117 4.117 21 O -0.249 6.249 22 C 0.094 3.906 23 O -0.237 6.237 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.009 0.991 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.186 0.814 33 H 0.183 0.817 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.942 3.071 20.688 21.005 hybrid contribution 1.384 -0.051 -0.485 1.468 sum -0.557 3.020 20.203 20.435 Atomic orbital electron populations 1.22219 0.94878 1.02152 1.02695 1.22168 0.93458 0.95277 0.85163 0.92639 1.19143 0.95259 0.94831 0.92006 1.21485 0.93492 1.33762 1.07354 0.92778 1.25862 1.03198 0.95149 0.95521 1.70071 1.37412 1.37199 1.12846 0.85646 0.80124 0.78814 0.77360 1.20173 1.20672 1.18793 1.88035 1.87167 1.35720 1.20114 1.21379 1.00564 0.91422 0.84216 1.19526 0.91765 1.00392 0.96530 1.21171 1.01148 0.95352 0.92353 1.20404 0.90577 1.00645 1.00164 1.20097 0.94561 0.96506 0.91171 1.19875 0.83470 1.01438 0.98856 1.20117 0.96251 0.98986 0.96336 1.87336 1.25222 1.82128 1.30202 1.26138 0.82961 1.00324 0.81216 1.87303 1.22553 1.59838 1.54028 0.90462 0.91414 0.93114 0.99092 0.96781 0.92904 0.89598 0.92916 0.81439 0.81667 0.85722 0.87428 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 9.53 71.98 0.69 -4.52 16 2 C 0.10 3.97 2.67 30.60 0.08 4.05 16 3 H 0.06 2.17 7.79 -2.39 -0.02 2.15 16 4 C 0.02 1.32 4.68 29.85 0.14 1.46 16 5 C -0.52 -30.58 8.88 25.60 0.23 -30.35 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 8 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 9 Si 0.96 46.12 29.54 68.60 2.03 48.14 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 13 O -0.39 -16.03 9.72 -148.98 -1.45 -17.48 16 14 C 0.10 3.06 5.87 71.24 0.42 3.48 16 15 C -0.08 -2.41 5.51 -19.86 -0.11 -2.51 16 16 C -0.08 -1.93 9.69 22.27 0.22 -1.71 16 17 C -0.10 -2.26 10.06 22.35 0.22 -2.03 16 18 C 0.02 0.57 7.15 22.59 0.16 0.73 16 19 C 0.01 0.24 7.15 22.59 0.16 0.40 16 20 C -0.10 -3.17 9.71 22.34 0.22 -2.96 16 21 O -0.33 -9.60 11.40 -76.01 -0.87 -10.46 16 22 C 0.20 3.87 8.89 113.37 1.01 4.88 16 23 O -0.32 -7.88 11.40 -76.10 -0.87 -8.74 16 24 H 0.08 1.93 7.87 -2.39 -0.02 1.91 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.09 2.01 7.81 -2.39 -0.02 1.99 16 31 H 0.05 1.61 8.03 -2.39 -0.02 1.59 16 32 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 35 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -73.33 312.49 4.09 -69.24 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.07 Total: 5.88 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 3.89 Total: -28.63 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -3.18 Total: -36.69 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.33 4.09 -69.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.327 kcal (2) G-P(sol) polarization free energy of solvation -73.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds