Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37810 * 120.04632 * 2 1 4 4 C 1.38517 * 120.30866 * 180.02562 * 3 2 1 5 5 C 1.38096 * 120.40586 * 359.97183 * 4 3 2 6 6 C 1.38664 * 120.08578 * 0.02872 * 5 4 3 7 7 O 1.35636 * 120.15450 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00035 * 354.51607 * 7 6 5 9 9 H 1.09001 * 109.47289 * 324.95417 * 8 7 6 10 10 C 1.52999 * 109.47219 * 84.95270 * 8 7 6 11 11 C 1.53003 * 109.47322 * 204.95174 * 8 7 6 12 12 C 1.50704 * 109.46744 * 65.00186 * 11 8 7 13 13 H 1.07997 * 120.00302 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00139 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46892 * 119.99857 * 16 14 12 19 19 H 1.48498 * 109.47160 * 240.00061 * 16 14 12 20 20 C 1.39726 * 120.05652 * 180.27819 * 2 1 3 21 21 C 1.47408 * 120.19354 * 359.97288 * 20 2 1 22 22 O 1.21505 * 120.00098 * 270.23114 * 21 20 2 23 23 O 1.34756 * 119.99658 * 90.22890 * 21 20 2 24 24 H 1.08994 * 109.47174 * 90.00489 * 1 2 3 25 25 H 1.09003 * 109.46653 * 210.00365 * 1 2 3 26 26 H 1.09000 * 109.47275 * 329.99992 * 1 2 3 27 27 H 1.08003 * 119.84779 * 0.02581 * 3 2 1 28 28 H 1.08001 * 119.80201 * 179.97438 * 4 3 2 29 29 H 1.07994 * 119.95764 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47408 * 179.97438 * 10 8 7 31 31 H 1.08998 * 109.47291 * 300.00133 * 10 8 7 32 32 H 1.09003 * 109.47180 * 60.00329 * 10 8 7 33 33 H 1.08993 * 109.47688 * 305.00229 * 11 8 7 34 34 H 1.08998 * 109.47501 * 184.99434 * 11 8 7 35 35 H 0.97004 * 120.00371 * 180.02562 * 15 14 12 36 36 H 0.96703 * 116.99647 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1929 0.0000 4 6 3.5822 1.1993 -0.0005 5 6 4.2865 0.0114 -0.0005 6 6 3.6091 -1.1984 -0.0005 7 8 4.2995 -2.3659 -0.0010 8 6 5.7206 -2.2792 -0.1231 9 1 5.9789 -1.4469 -0.7779 10 6 6.3383 -2.0521 1.2581 11 6 6.2621 -3.5816 -0.7160 12 6 5.7500 -3.7435 -2.1241 13 1 5.1029 -2.9928 -2.5531 14 6 6.1070 -4.8505 -2.8645 15 7 6.8947 -5.7649 -2.3420 16 14 5.4718 -5.0516 -4.6096 17 1 4.6105 -3.8935 -4.9594 18 1 6.6195 -5.1161 -5.5497 19 1 4.6808 -6.3046 -4.7072 20 6 2.2068 -1.2094 -0.0059 21 6 1.4754 -2.4891 -0.0115 22 8 1.1706 -3.0194 1.0385 23 8 1.1446 -3.0710 -1.1811 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6553 2.1272 0.0004 28 1 4.1146 2.1389 -0.0009 29 1 5.3664 0.0248 -0.0013 30 1 7.4224 -1.9863 1.1650 31 1 5.9527 -1.1242 1.6805 32 1 6.0801 -2.8844 1.9129 33 1 5.9287 -4.4234 -0.1092 34 1 7.3516 -3.5506 -0.7270 35 1 7.1461 -6.5436 -2.8629 36 1 0.6649 -3.9093 -1.1342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706588788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -118.617679 kcal Electronic energy + Delta-G solvation = -20150.348007 eV Core-core repulsion = 16985.404973 eV Total energy + Delta-G solvation = -3164.943033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53035 -39.18660 -37.56433 -35.69039 -33.61566 -32.57701 -31.81948 -29.97323 -27.67329 -26.97706 -24.27964 -23.46326 -22.02341 -21.15067 -19.63842 -18.03301 -17.53246 -16.70325 -16.41650 -16.20939 -14.93081 -14.75318 -14.57596 -14.39916 -13.97437 -13.63715 -13.36198 -13.06588 -12.68155 -12.37172 -12.04210 -11.93257 -11.81047 -11.64548 -11.43706 -11.26834 -11.11279 -10.93127 -10.78871 -10.45741 -10.34747 -10.05320 -9.44820 -9.14363 -8.78139 -8.41623 -7.92870 -6.04112 -4.05771 1.16115 1.54464 2.41906 3.30492 3.33361 3.38105 3.44205 3.62943 3.79574 4.44689 4.76682 4.92943 5.12354 5.25859 5.31907 5.33539 5.46605 5.51845 5.59746 5.64461 5.69228 5.75901 5.90777 6.00338 6.12919 6.33069 6.37696 6.50031 6.56354 6.67289 6.74362 6.81442 7.41647 7.52730 7.92173 7.96629 8.16630 8.31578 8.97985 9.58027 11.07274 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.006636 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.384417 B = 4218.568613 C = 4811.336621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.009 4.009 3 C -0.176 4.176 4 C -0.053 4.053 5 C -0.222 4.222 6 C 0.196 3.804 7 O -0.286 6.286 8 C 0.085 3.915 9 H 0.067 0.933 10 C -0.179 4.179 11 C 0.025 3.975 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.160 4.160 21 C 0.553 3.447 22 O -0.512 6.512 23 O -0.502 6.502 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.140 0.860 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.261 0.739 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 13.039 4.367 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.072 4.072 5 C -0.240 4.240 6 C 0.147 3.853 7 O -0.197 6.197 8 C 0.030 3.970 9 H 0.085 0.915 10 C -0.236 4.236 11 C -0.012 4.012 12 C -0.553 4.553 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.162 4.162 21 C 0.396 3.604 22 O -0.400 6.400 23 O -0.313 6.313 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -8.703 12.872 4.608 16.207 hybrid contribution -0.307 -0.690 -0.942 1.207 sum -9.010 12.183 3.666 15.589 Atomic orbital electron populations 1.20903 0.90629 1.03292 1.03012 1.19561 0.95712 0.90813 0.94888 1.20689 0.94123 0.96856 1.07777 1.21056 0.93970 0.97530 0.94599 1.21319 1.01075 0.91583 1.10053 1.19016 0.89752 0.86829 0.89700 1.86254 1.22599 1.26246 1.84608 1.23012 0.75476 1.03249 0.95246 0.91509 1.22428 1.01431 1.01662 0.98090 1.19295 0.96230 0.89613 0.96067 1.21148 1.29610 1.06575 0.97930 0.92484 1.24976 0.95117 0.95774 0.98447 1.69961 1.35690 1.10749 1.37148 0.86521 0.78712 0.78213 0.84561 1.19577 1.21027 1.20945 1.18083 0.90551 0.90995 1.16566 1.20559 0.74768 0.84025 0.81062 1.90872 1.51854 1.63941 1.33374 1.84727 1.70822 1.40695 1.35059 0.90206 0.91507 0.90575 0.85488 0.85499 0.84276 0.91064 0.93132 0.91755 0.95234 0.94084 0.92964 0.73346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.61 36.01 0.35 -1.00 16 2 C -0.01 -0.13 5.91 -104.22 -0.62 -0.75 16 3 C -0.18 -2.15 9.68 -39.64 -0.38 -2.53 16 4 C -0.05 -0.67 10.03 -39.53 -0.40 -1.07 16 5 C -0.22 -3.43 8.24 -39.48 -0.33 -3.76 16 6 C 0.20 3.70 6.61 -38.68 -0.26 3.44 16 7 O -0.29 -6.27 9.00 -18.61 -0.17 -6.44 16 8 C 0.09 1.76 2.17 -26.73 -0.06 1.70 16 9 H 0.07 1.31 6.31 -51.93 -0.33 0.98 16 10 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 11 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 12 C -0.51 -14.54 8.88 -34.44 -0.31 -14.84 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.16 -2.86 5.76 -104.86 -0.60 -3.46 16 21 C 0.55 10.29 5.78 34.46 0.20 10.49 16 22 O -0.51 -10.48 17.89 -19.27 -0.34 -10.83 16 23 O -0.50 -8.30 13.44 -40.64 -0.55 -8.85 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.80 7.09 -51.93 -0.37 0.44 16 26 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.99 5.43 -52.49 -0.28 1.71 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.75 6.91 -51.93 -0.36 0.39 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.41 4.72 9.11 45.56 0.42 5.14 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -33.94 312.27 -6.77 -40.71 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.84 Total: 2.21 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.29 Total: -12.39 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.06 Total: -26.12 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.94 -6.77 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706588788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.910 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds