Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37810 * 120.04632 * 2 1 4 4 C 1.38517 * 120.30866 * 180.02562 * 3 2 1 5 5 C 1.38096 * 120.40586 * 359.97183 * 4 3 2 6 6 C 1.38664 * 120.08578 * 0.02872 * 5 4 3 7 7 O 1.35636 * 120.15450 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00035 * 354.51607 * 7 6 5 9 9 H 1.09001 * 109.47289 * 324.95417 * 8 7 6 10 10 C 1.52999 * 109.47219 * 84.95270 * 8 7 6 11 11 C 1.53003 * 109.47322 * 204.95174 * 8 7 6 12 12 C 1.50704 * 109.46744 * 65.00186 * 11 8 7 13 13 H 1.07997 * 120.00302 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00139 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46892 * 119.99857 * 16 14 12 19 19 H 1.48498 * 109.47160 * 240.00061 * 16 14 12 20 20 C 1.39726 * 120.05652 * 180.27819 * 2 1 3 21 21 C 1.47408 * 120.19354 * 359.97288 * 20 2 1 22 22 O 1.21505 * 120.00098 * 270.23114 * 21 20 2 23 23 O 1.34756 * 119.99658 * 90.22890 * 21 20 2 24 24 H 1.08994 * 109.47174 * 90.00489 * 1 2 3 25 25 H 1.09003 * 109.46653 * 210.00365 * 1 2 3 26 26 H 1.09000 * 109.47275 * 329.99992 * 1 2 3 27 27 H 1.08003 * 119.84779 * 0.02581 * 3 2 1 28 28 H 1.08001 * 119.80201 * 179.97438 * 4 3 2 29 29 H 1.07994 * 119.95764 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47408 * 179.97438 * 10 8 7 31 31 H 1.08998 * 109.47291 * 300.00133 * 10 8 7 32 32 H 1.09003 * 109.47180 * 60.00329 * 10 8 7 33 33 H 1.08993 * 109.47688 * 305.00229 * 11 8 7 34 34 H 1.08998 * 109.47501 * 184.99434 * 11 8 7 35 35 H 0.97004 * 120.00371 * 180.02562 * 15 14 12 36 36 H 0.96703 * 116.99647 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1929 0.0000 4 6 3.5822 1.1993 -0.0005 5 6 4.2865 0.0114 -0.0005 6 6 3.6091 -1.1984 -0.0005 7 8 4.2995 -2.3659 -0.0010 8 6 5.7206 -2.2792 -0.1231 9 1 5.9789 -1.4469 -0.7779 10 6 6.3383 -2.0521 1.2581 11 6 6.2621 -3.5816 -0.7160 12 6 5.7500 -3.7435 -2.1241 13 1 5.1029 -2.9928 -2.5531 14 6 6.1070 -4.8505 -2.8645 15 7 6.8947 -5.7649 -2.3420 16 14 5.4718 -5.0516 -4.6096 17 1 4.6105 -3.8935 -4.9594 18 1 6.6195 -5.1161 -5.5497 19 1 4.6808 -6.3046 -4.7072 20 6 2.2068 -1.2094 -0.0059 21 6 1.4754 -2.4891 -0.0115 22 8 1.1706 -3.0194 1.0385 23 8 1.1446 -3.0710 -1.1811 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6553 2.1272 0.0004 28 1 4.1146 2.1389 -0.0009 29 1 5.3664 0.0248 -0.0013 30 1 7.4224 -1.9863 1.1650 31 1 5.9527 -1.1242 1.6805 32 1 6.0801 -2.8844 1.9129 33 1 5.9287 -4.4234 -0.1092 34 1 7.3516 -3.5506 -0.7270 35 1 7.1461 -6.5436 -2.8629 36 1 0.6649 -3.9093 -1.1342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706588788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = -140.815393 kcal Electronic energy + Delta-G solvation = -20151.310572 eV Core-core repulsion = 16985.404973 eV Total energy + Delta-G solvation = -3165.905598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83874 -40.61182 -38.83101 -37.10537 -35.55569 -33.63402 -33.60470 -31.24201 -29.48817 -28.06614 -25.61706 -25.24056 -23.49805 -22.41227 -21.07011 -19.38788 -18.93926 -18.54128 -18.02501 -17.54198 -16.61894 -16.21722 -15.98954 -15.77545 -15.19331 -14.84990 -14.67764 -14.31843 -14.17721 -13.84619 -13.56429 -13.44529 -13.26232 -12.93179 -12.75713 -12.69139 -12.66312 -12.58108 -12.35796 -12.17171 -11.81540 -11.65387 -11.32193 -11.09871 -10.62330 -9.89622 -9.16264 -8.24021 -6.33261 0.04763 0.40687 1.00388 1.35730 1.36976 1.50457 2.10829 2.26382 2.38108 2.66650 3.10478 3.76146 3.86956 4.00069 4.07043 4.18074 4.23885 4.28916 4.41652 4.41710 4.67336 4.71827 4.75233 4.80672 4.96125 5.12082 5.14108 5.22934 5.31841 5.36810 5.42602 5.44830 5.49820 5.72631 5.83650 6.14301 6.52384 6.78270 6.86658 7.34569 8.87943 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.006636 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.384417 B = 4218.568613 C = 4811.336621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.015 4.015 3 C -0.161 4.161 4 C -0.042 4.042 5 C -0.230 4.230 6 C 0.156 3.844 7 O -0.324 6.324 8 C 0.093 3.907 9 H 0.077 0.923 10 C -0.168 4.168 11 C 0.027 3.973 12 C -0.529 4.529 13 H 0.051 0.949 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.279 1.279 20 C -0.194 4.194 21 C 0.553 3.447 22 O -0.544 6.544 23 O -0.506 6.506 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.050 0.950 33 H -0.007 1.007 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 16.248 3.650 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 C -0.179 4.179 4 C -0.060 4.060 5 C -0.248 4.248 6 C 0.108 3.892 7 O -0.237 6.237 8 C 0.038 3.962 9 H 0.095 0.905 10 C -0.225 4.225 11 C -0.010 4.010 12 C -0.567 4.567 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.784 3.216 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.205 1.205 20 C -0.195 4.195 21 C 0.397 3.603 22 O -0.435 6.435 23 O -0.319 6.319 24 H 0.111 0.889 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.189 0.811 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.011 0.989 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.640 16.090 3.882 19.154 hybrid contribution -0.106 -1.615 -0.717 1.770 sum -9.746 14.475 3.164 17.735 Atomic orbital electron populations 1.20986 0.88581 1.04050 1.04027 1.20039 0.97318 0.90214 0.93938 1.21253 0.94262 0.97623 1.04718 1.21575 0.94413 0.97953 0.92050 1.21523 1.01627 0.91454 1.10199 1.19384 0.90189 0.86945 0.92650 1.86145 1.22741 1.28804 1.86055 1.22722 0.75892 1.00388 0.97198 0.90540 1.22333 1.02251 1.02309 0.95655 1.19139 0.95675 0.91290 0.94852 1.21453 1.29416 1.06607 0.99267 0.93106 1.25862 0.95299 0.95442 1.02812 1.70074 1.36830 1.11328 1.38885 0.85479 0.78449 0.78195 0.79482 1.19082 1.19709 1.20494 1.18455 0.90574 0.91842 1.18662 1.20937 0.74129 0.84402 0.80844 1.90835 1.53362 1.64961 1.34338 1.84695 1.70887 1.41841 1.34474 0.88939 0.93246 0.87300 0.81080 0.81243 0.83580 0.89376 0.90593 0.93131 0.98890 0.95125 0.92660 0.71367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 9.61 71.24 0.68 -1.65 16 2 C -0.01 -0.38 5.91 -19.61 -0.12 -0.50 16 3 C -0.16 -3.17 9.68 22.23 0.22 -2.96 16 4 C -0.04 -0.88 10.03 22.30 0.22 -0.65 16 5 C -0.23 -6.66 8.24 22.34 0.18 -6.48 16 6 C 0.16 5.89 6.61 22.86 0.15 6.04 16 7 O -0.32 -14.78 9.00 -89.49 -0.81 -15.58 16 8 C 0.09 3.94 2.17 30.59 0.07 4.01 16 9 H 0.08 3.02 6.31 -2.39 -0.02 3.00 16 10 C -0.17 -5.68 9.17 71.98 0.66 -5.02 16 11 C 0.03 1.46 4.68 29.85 0.14 1.60 16 12 C -0.53 -30.85 8.88 25.60 0.23 -30.63 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 16 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.19 -6.89 5.76 -20.02 -0.12 -7.01 16 21 C 0.55 21.19 5.78 70.24 0.41 21.60 16 22 O -0.54 -23.24 17.89 19.82 0.35 -22.88 16 23 O -0.51 -17.18 13.44 -56.67 -0.76 -17.94 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.14 7.09 -2.39 -0.02 1.12 16 26 H 0.11 1.38 8.09 -2.39 -0.02 1.36 16 27 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.15 3.90 5.43 -2.91 -0.02 3.88 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.08 2.16 6.91 -2.39 -0.02 2.14 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.43 10.22 9.11 -74.06 -0.67 9.55 16 Total: -1.00 -77.28 312.27 4.71 -72.56 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.43 Total: 14.06 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.19 Total: -20.97 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.21 Total: -56.41 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.28 4.71 -72.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706588788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.251 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds