Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37813 * 120.05010 * 2 1 4 4 C 1.38515 * 120.30831 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.40022 * 0.02562 * 4 3 2 6 6 C 1.38657 * 120.09544 * 359.78282 * 5 4 3 7 7 O 1.35639 * 120.15981 * 180.23330 * 6 5 4 8 8 C 1.42900 * 116.99790 * 5.48143 * 7 6 5 9 9 H 1.09000 * 109.46846 * 35.05737 * 8 7 6 10 10 C 1.52994 * 109.47389 * 275.05309 * 8 7 6 11 11 C 1.53002 * 109.46693 * 155.05274 * 8 7 6 12 12 C 1.50694 * 109.47298 * 295.00179 * 11 8 7 13 13 H 1.08006 * 120.00485 * 0.02562 * 12 11 8 14 14 C 1.37882 * 120.00032 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00045 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46819 * 60.00323 * 16 14 12 18 18 H 1.48500 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47382 * 300.00368 * 16 14 12 20 20 C 1.39732 * 120.04769 * 180.02562 * 2 1 3 21 21 C 1.47402 * 120.19870 * 359.95654 * 20 2 1 22 22 O 1.21510 * 119.99798 * 89.99322 * 21 20 2 23 23 O 1.34745 * 119.99917 * 269.99826 * 21 20 2 24 24 H 1.09003 * 109.47247 * 269.97808 * 1 2 3 25 25 H 1.08997 * 109.47294 * 29.97748 * 1 2 3 26 26 H 1.09003 * 109.47447 * 149.98204 * 1 2 3 27 27 H 1.07997 * 119.84475 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.79771 * 180.02562 * 4 3 2 29 29 H 1.08011 * 119.95169 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.46609 * 60.00310 * 10 8 7 31 31 H 1.09008 * 109.47035 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47476 * 300.00042 * 10 8 7 33 33 H 1.08998 * 109.47137 * 55.00859 * 11 8 7 34 34 H 1.09003 * 109.47062 * 175.00555 * 11 8 7 35 35 H 0.96996 * 120.00167 * 180.02562 * 15 14 12 36 36 H 0.96701 * 117.00332 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1929 0.0000 4 6 3.5822 1.1991 0.0005 5 6 4.2864 0.0112 0.0005 6 6 3.6090 -1.1987 0.0046 7 8 4.2993 -2.3662 0.0093 8 6 5.7204 -2.2791 0.1316 9 1 5.9785 -1.4447 0.7837 10 6 6.3386 -2.0568 -1.2501 11 6 6.2615 -3.5795 0.7291 12 6 5.7490 -3.7367 2.1375 13 1 5.1017 -2.9845 2.5638 14 6 6.1064 -4.8408 2.8821 15 7 6.8950 -5.7565 2.3633 16 14 5.4718 -5.0353 4.6281 17 1 3.9874 -5.0778 4.6134 18 1 5.9968 -6.2975 5.2080 19 1 5.9258 -3.8855 5.4509 20 6 2.2066 -1.2095 -0.0005 21 6 1.4751 -2.4892 -0.0001 22 8 1.1728 -3.0165 -1.0523 23 8 1.1416 -3.0742 1.1670 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6554 2.1272 0.0004 28 1 4.1147 2.1388 0.0009 29 1 5.3664 0.0245 0.0014 30 1 5.9530 -1.1302 -1.6757 31 1 7.4226 -1.9898 -1.1567 32 1 6.0805 -2.8912 -1.9022 33 1 5.9283 -4.4233 0.1249 34 1 7.3510 -3.5486 0.7404 35 1 7.1462 -6.5334 2.8869 36 1 1.4031 -2.6169 1.9779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706588791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = -116.998298 kcal Electronic energy + Delta-G solvation = -20177.242212 eV Core-core repulsion = 17012.369400 eV Total energy + Delta-G solvation = -3164.872812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57393 -39.00293 -37.55474 -36.04785 -33.65756 -32.59986 -31.85163 -29.95605 -27.70942 -27.01477 -24.09804 -23.48829 -22.07520 -21.39751 -19.83520 -18.48721 -17.30953 -16.46194 -16.27078 -16.03823 -15.14311 -14.72302 -14.60127 -14.48602 -14.09857 -13.65039 -13.41644 -13.38119 -12.73501 -12.43300 -12.10682 -11.97523 -11.87828 -11.72358 -11.47601 -11.29343 -11.12780 -10.99012 -10.78909 -10.52764 -10.21509 -9.91266 -9.48687 -9.21443 -8.86745 -8.44315 -8.00510 -6.07181 -4.09866 1.08455 1.46954 2.47380 3.29480 3.34844 3.35945 3.56519 3.58440 3.72297 4.40250 4.64498 4.70070 4.91651 5.12498 5.23092 5.25893 5.30195 5.42692 5.52977 5.58926 5.63315 5.68550 5.85831 5.93628 6.08922 6.26474 6.31114 6.44039 6.53272 6.63071 6.75235 7.37823 7.48313 7.51348 7.87071 7.89689 7.96790 8.27016 8.92356 9.53697 11.04179 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.006629 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.768600 B = 4222.913465 C = 4804.134385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.010 4.010 3 C -0.177 4.177 4 C -0.052 4.052 5 C -0.222 4.222 6 C 0.195 3.805 7 O -0.285 6.285 8 C 0.086 3.914 9 H 0.067 0.933 10 C -0.179 4.179 11 C 0.025 3.975 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.225 4.225 21 C 0.565 3.435 22 O -0.467 6.467 23 O -0.501 6.501 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 14.874 -2.840 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.010 4.010 3 C -0.195 4.195 4 C -0.070 4.070 5 C -0.241 4.241 6 C 0.146 3.854 7 O -0.197 6.197 8 C 0.031 3.969 9 H 0.084 0.916 10 C -0.236 4.236 11 C -0.012 4.012 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.228 4.228 21 C 0.404 3.596 22 O -0.351 6.351 23 O -0.311 6.311 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.156 0.844 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.019 13.795 -3.694 16.378 hybrid contribution 0.270 0.361 1.448 1.516 sum -7.749 14.156 -2.246 16.293 Atomic orbital electron populations 1.20934 0.90589 1.03668 1.02962 1.19606 0.95644 0.90935 0.94804 1.20723 0.94122 0.96996 1.07670 1.21071 0.93998 0.97539 0.94418 1.21352 1.01100 0.91707 1.09926 1.19077 0.89933 0.86768 0.89630 1.86277 1.22673 1.26168 1.84549 1.23019 0.75403 1.03228 0.95284 0.91551 1.22427 1.01435 1.01701 0.98077 1.19288 0.96235 0.89658 0.95989 1.21014 1.30054 1.06710 0.97921 0.92776 1.24979 0.95056 0.95735 0.98443 1.69927 1.35296 1.10725 1.37314 0.86641 0.79425 0.77401 0.84491 1.20027 1.21195 1.20274 1.19415 0.91559 0.94195 1.17621 1.19924 0.74694 0.82110 0.82824 1.90836 1.51377 1.64858 1.28033 1.84506 1.74971 1.54102 1.17471 0.90327 0.90517 0.91152 0.85601 0.85577 0.84361 0.93180 0.91052 0.91675 0.95144 0.94097 0.92755 0.72525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.62 36.00 0.35 -0.93 16 2 C -0.01 -0.12 5.91 -104.22 -0.62 -0.74 16 3 C -0.18 -1.99 9.68 -39.63 -0.38 -2.37 16 4 C -0.05 -0.61 10.03 -39.53 -0.40 -1.01 16 5 C -0.22 -3.23 8.23 -39.48 -0.33 -3.56 16 6 C 0.19 3.43 6.61 -38.67 -0.26 3.17 16 7 O -0.29 -6.00 9.00 -18.62 -0.17 -6.17 16 8 C 0.09 1.71 2.17 -26.73 -0.06 1.66 16 9 H 0.07 1.24 6.31 -51.93 -0.33 0.92 16 10 C -0.18 -2.98 9.17 37.15 0.34 -2.64 16 11 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 12 C -0.52 -14.22 8.88 -34.44 -0.31 -14.53 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.23 -3.68 5.56 -104.86 -0.58 -4.26 16 21 C 0.57 10.41 5.84 34.46 0.20 10.61 16 22 O -0.47 -10.19 17.95 -19.27 -0.35 -10.53 16 23 O -0.50 -8.25 13.48 -40.61 -0.55 -8.80 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 27 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.14 1.89 5.43 -52.48 -0.28 1.61 16 30 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.42 4.74 8.96 45.56 0.41 5.15 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -33.71 312.09 -6.76 -40.47 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.85 Total: 2.22 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.26 Total: -12.52 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.06 Total: -25.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.71 -6.76 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706588791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.529 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds