Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37813 * 120.05010 * 2 1 4 4 C 1.38515 * 120.30831 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.40022 * 0.02562 * 4 3 2 6 6 C 1.38657 * 120.09544 * 359.78282 * 5 4 3 7 7 O 1.35639 * 120.15981 * 180.23330 * 6 5 4 8 8 C 1.42900 * 116.99790 * 5.48143 * 7 6 5 9 9 H 1.09000 * 109.46846 * 35.05737 * 8 7 6 10 10 C 1.52994 * 109.47389 * 275.05309 * 8 7 6 11 11 C 1.53002 * 109.46693 * 155.05274 * 8 7 6 12 12 C 1.50694 * 109.47298 * 295.00179 * 11 8 7 13 13 H 1.08006 * 120.00485 * 0.02562 * 12 11 8 14 14 C 1.37882 * 120.00032 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00045 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46819 * 60.00323 * 16 14 12 18 18 H 1.48500 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47382 * 300.00368 * 16 14 12 20 20 C 1.39732 * 120.04769 * 180.02562 * 2 1 3 21 21 C 1.47402 * 120.19870 * 359.95654 * 20 2 1 22 22 O 1.21510 * 119.99798 * 89.99322 * 21 20 2 23 23 O 1.34745 * 119.99917 * 269.99826 * 21 20 2 24 24 H 1.09003 * 109.47247 * 269.97808 * 1 2 3 25 25 H 1.08997 * 109.47294 * 29.97748 * 1 2 3 26 26 H 1.09003 * 109.47447 * 149.98204 * 1 2 3 27 27 H 1.07997 * 119.84475 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.79771 * 180.02562 * 4 3 2 29 29 H 1.08011 * 119.95169 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.46609 * 60.00310 * 10 8 7 31 31 H 1.09008 * 109.47035 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47476 * 300.00042 * 10 8 7 33 33 H 1.08998 * 109.47137 * 55.00859 * 11 8 7 34 34 H 1.09003 * 109.47062 * 175.00555 * 11 8 7 35 35 H 0.96996 * 120.00167 * 180.02562 * 15 14 12 36 36 H 0.96701 * 117.00332 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1929 0.0000 4 6 3.5822 1.1991 0.0005 5 6 4.2864 0.0112 0.0005 6 6 3.6090 -1.1987 0.0046 7 8 4.2993 -2.3662 0.0093 8 6 5.7204 -2.2791 0.1316 9 1 5.9785 -1.4447 0.7837 10 6 6.3386 -2.0568 -1.2501 11 6 6.2615 -3.5795 0.7291 12 6 5.7490 -3.7367 2.1375 13 1 5.1017 -2.9845 2.5638 14 6 6.1064 -4.8408 2.8821 15 7 6.8950 -5.7565 2.3633 16 14 5.4718 -5.0353 4.6281 17 1 3.9874 -5.0778 4.6134 18 1 5.9968 -6.2975 5.2080 19 1 5.9258 -3.8855 5.4509 20 6 2.2066 -1.2095 -0.0005 21 6 1.4751 -2.4892 -0.0001 22 8 1.1728 -3.0165 -1.0523 23 8 1.1416 -3.0742 1.1670 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6554 2.1272 0.0004 28 1 4.1147 2.1388 0.0009 29 1 5.3664 0.0245 0.0014 30 1 5.9530 -1.1302 -1.6757 31 1 7.4226 -1.9898 -1.1567 32 1 6.0805 -2.8912 -1.9022 33 1 5.9283 -4.4233 0.1249 34 1 7.3510 -3.5486 0.7404 35 1 7.1462 -6.5334 2.8869 36 1 1.4031 -2.6169 1.9779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706588791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = -139.116732 kcal Electronic energy + Delta-G solvation = -20178.201339 eV Core-core repulsion = 17012.369400 eV Total energy + Delta-G solvation = -3165.831939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83853 -40.43005 -38.76234 -37.49917 -35.54542 -33.60157 -33.59124 -31.16951 -29.48588 -28.04063 -25.50799 -25.11568 -23.49665 -22.66989 -21.22713 -19.74379 -18.65817 -18.50080 -17.54754 -17.47936 -16.62872 -16.26604 -15.93839 -15.89483 -15.27460 -14.82033 -14.74611 -14.54575 -14.17099 -13.84807 -13.57688 -13.44317 -13.27856 -12.93433 -12.78236 -12.70254 -12.63449 -12.58612 -12.36003 -12.14916 -11.80543 -11.47087 -11.22043 -11.09565 -10.59868 -9.91669 -9.17294 -8.22104 -6.32179 0.03956 0.40267 1.05684 1.38371 1.42140 1.49077 2.24195 2.37080 2.39382 2.62460 3.12889 3.50934 3.75831 3.90633 4.01425 4.09765 4.20672 4.26092 4.37846 4.41173 4.67311 4.70860 4.73076 4.80244 4.95521 5.13243 5.13823 5.22975 5.32565 5.39600 5.44068 5.46998 5.73190 5.83060 6.14437 6.16999 6.51138 6.70955 6.79366 7.35734 8.89666 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.006629 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.768600 B = 4222.913465 C = 4804.134385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.161 4.161 4 C -0.041 4.041 5 C -0.229 4.229 6 C 0.159 3.841 7 O -0.324 6.324 8 C 0.095 3.905 9 H 0.081 0.919 10 C -0.170 4.170 11 C 0.026 3.974 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.243 4.243 21 C 0.567 3.433 22 O -0.516 6.516 23 O -0.509 6.509 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.169 0.831 28 H 0.167 0.833 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.047 0.953 33 H -0.011 1.011 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 18.578 -1.776 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.010 4.010 3 C -0.179 4.179 4 C -0.058 4.058 5 C -0.248 4.248 6 C 0.111 3.889 7 O -0.237 6.237 8 C 0.040 3.960 9 H 0.098 0.902 10 C -0.227 4.227 11 C -0.011 4.011 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.185 1.185 20 C -0.246 4.246 21 C 0.409 3.591 22 O -0.404 6.404 23 O -0.321 6.321 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.065 0.935 27 H 0.186 0.814 28 H 0.184 0.816 29 H 0.162 0.838 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.008 0.992 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -8.979 17.541 -2.599 19.876 hybrid contribution 0.487 -0.697 1.115 1.402 sum -8.493 16.844 -1.484 18.922 Atomic orbital electron populations 1.21016 0.88726 1.03915 1.04358 1.19995 0.97028 0.90230 0.93725 1.21240 0.94190 0.97732 1.04696 1.21558 0.94439 0.97908 0.91913 1.21517 1.01571 0.91559 1.10127 1.19384 0.90271 0.86738 0.92476 1.86173 1.22720 1.28827 1.86021 1.22700 0.75874 1.00391 0.97027 0.90159 1.22343 1.02263 1.02218 0.95897 1.19137 0.95611 0.91273 0.95030 1.21420 1.29698 1.06810 0.98992 0.92314 1.25929 0.95283 0.95449 1.03029 1.70069 1.36805 1.11372 1.39074 0.85561 0.78920 0.77785 0.79233 1.19397 1.21051 1.18502 1.19451 0.91202 0.94196 1.19712 1.20349 0.73730 0.82594 0.82460 1.90791 1.53498 1.66334 1.29751 1.84431 1.74782 1.54757 1.18124 0.88272 0.87607 0.93521 0.81399 0.81564 0.83800 0.90641 0.89453 0.93336 0.99216 0.95343 0.92761 0.70251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.62 71.23 0.69 -1.47 16 2 C -0.01 -0.22 5.91 -19.60 -0.12 -0.33 16 3 C -0.16 -2.80 9.68 22.24 0.22 -2.59 16 4 C -0.04 -0.76 10.03 22.30 0.22 -0.53 16 5 C -0.23 -6.10 8.23 22.34 0.18 -5.91 16 6 C 0.16 5.51 6.61 22.86 0.15 5.66 16 7 O -0.32 -14.06 9.00 -89.53 -0.81 -14.86 16 8 C 0.10 3.88 2.17 30.59 0.07 3.95 16 9 H 0.08 2.98 6.31 -2.39 -0.02 2.97 16 10 C -0.17 -5.65 9.17 71.98 0.66 -4.99 16 11 C 0.03 1.38 4.68 29.85 0.14 1.52 16 12 C -0.53 -29.87 8.88 25.60 0.23 -29.65 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.00 0.05 5.46 84.66 0.46 0.52 16 15 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 16 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 C -0.24 -7.82 5.56 -20.02 -0.11 -7.93 16 21 C 0.57 21.51 5.84 70.24 0.41 21.92 16 22 O -0.52 -23.66 17.95 19.80 0.36 -23.30 16 23 O -0.51 -17.14 13.48 -56.56 -0.76 -17.90 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.05 1.06 7.08 -2.39 -0.02 1.04 16 27 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 29 H 0.14 3.57 5.43 -2.90 -0.02 3.56 16 30 H 0.07 2.10 6.91 -2.38 -0.02 2.09 16 31 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.44 9.95 8.96 -74.06 -0.66 9.28 16 Total: -1.00 -77.59 312.09 4.73 -72.86 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.44 Total: 13.61 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.20 Total: -19.83 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.58 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -1.21 Total: -56.07 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.59 4.73 -72.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706588791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.261 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds