Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37820 * 120.04490 * 2 1 4 4 C 1.38516 * 120.30573 * 180.25362 * 3 2 1 5 5 C 1.38100 * 120.40307 * 359.78645 * 4 3 2 6 6 C 1.38671 * 120.08910 * 359.95739 * 5 4 3 7 7 O 1.35638 * 120.15393 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00118 * 359.97365 * 7 6 5 9 9 C 1.52995 * 109.47288 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.47359 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47410 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99516 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00331 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00377 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99795 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47211 * 89.99832 * 15 13 11 17 17 H 1.48501 * 109.47290 * 209.99960 * 15 13 11 18 18 H 1.48503 * 109.47259 * 330.00156 * 15 13 11 19 19 C 1.39723 * 120.05266 * 179.76629 * 2 1 3 20 20 C 1.47402 * 120.19680 * 0.02562 * 19 2 1 21 21 O 1.21513 * 120.00149 * 269.72615 * 20 19 2 22 22 O 1.34754 * 119.99824 * 89.44687 * 20 19 2 23 23 H 1.08998 * 109.47382 * 270.23238 * 1 2 3 24 24 H 1.08997 * 109.47409 * 30.23941 * 1 2 3 25 25 H 1.09007 * 109.46740 * 150.23248 * 1 2 3 26 26 H 1.08001 * 119.84490 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.79861 * 179.76144 * 4 3 2 28 28 H 1.07997 * 119.95477 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47234 * 300.00355 * 8 7 6 30 30 H 1.08997 * 109.47101 * 60.00234 * 8 7 6 31 31 H 1.08999 * 109.47030 * 300.00182 * 9 8 7 32 32 H 1.08997 * 109.47548 * 60.00232 * 9 8 7 33 33 H 1.08999 * 109.46514 * 300.00207 * 10 9 8 34 34 H 1.08997 * 109.46823 * 59.99516 * 10 9 8 35 35 H 0.97000 * 120.00226 * 179.97438 * 14 13 11 36 36 H 0.96692 * 117.00023 * 0.27887 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1930 0.0000 4 6 3.5822 1.1993 -0.0053 5 6 4.2865 0.0114 -0.0062 6 6 3.6090 -1.1985 -0.0009 7 8 4.2995 -2.3660 -0.0012 8 6 5.7256 -2.2763 -0.0078 9 6 6.3252 -3.6839 -0.0078 10 6 7.8522 -3.5879 -0.0142 11 6 8.4428 -4.9743 -0.0149 12 1 7.7938 -5.8377 -0.0107 13 6 9.8114 -5.1407 -0.0208 14 7 10.3268 -6.3506 -0.0209 15 14 10.9337 -3.6475 -0.0288 16 1 11.2375 -3.2491 1.3691 17 1 12.1972 -3.9816 -0.7339 18 1 10.2587 -2.5246 -0.7278 19 6 2.2068 -1.2094 0.0049 20 6 1.4753 -2.4891 0.0096 21 8 1.1778 -3.0151 1.0638 22 8 1.1317 -3.0730 -1.1553 23 1 -0.3634 0.0042 1.0276 24 1 -0.3634 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6553 2.1273 0.0004 27 1 4.1146 2.1389 -0.0092 28 1 5.3664 0.0248 -0.0107 29 1 6.0520 -1.7427 -0.9004 30 1 6.0600 -1.7387 0.8794 31 1 5.9988 -4.2178 0.8846 32 1 5.9909 -4.2213 -0.8953 33 1 8.1788 -3.0538 -0.9065 34 1 8.1862 -3.0507 0.8734 35 1 11.2897 -6.4677 -0.0254 36 1 1.3901 -2.6171 -1.9679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706612183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = -119.235830 kcal Electronic energy + Delta-G solvation = -19222.144453 eV Core-core repulsion = 16057.174614 eV Total energy + Delta-G solvation = -3164.969838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90929 -39.30826 -37.84708 -36.42795 -34.26498 -32.91598 -32.04763 -30.62938 -27.67762 -27.32412 -24.38794 -23.51187 -21.89687 -21.17380 -20.32789 -18.74082 -17.64673 -16.92448 -16.53115 -16.47349 -16.01219 -15.30900 -14.97898 -14.35681 -14.24105 -14.10177 -13.74060 -13.52017 -13.49553 -12.76653 -12.57443 -12.18040 -12.16915 -11.91828 -11.71619 -11.51756 -11.26350 -10.96106 -10.75058 -10.28421 -10.14772 -9.93420 -9.79862 -9.29555 -9.19294 -8.60986 -8.45012 -6.10241 -4.09762 0.75309 1.10617 2.11651 3.05961 3.20453 3.25057 3.32568 3.33887 3.35273 4.28021 4.38205 4.40244 4.59249 4.80495 4.92765 4.96361 5.20998 5.21596 5.26717 5.28190 5.35067 5.36297 5.66339 5.69023 5.92507 6.01809 6.14868 6.26281 6.30737 6.48780 6.68805 7.11091 7.13522 7.25263 7.28109 7.58909 7.69373 8.46455 8.94550 9.50480 11.03069 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003997 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.201742 B = 7003.439140 C = 7785.159060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.169 4.169 4 C -0.050 4.050 5 C -0.218 4.218 6 C 0.184 3.816 7 O -0.309 6.309 8 C 0.056 3.944 9 C -0.102 4.102 10 C -0.008 4.008 11 C -0.524 4.524 12 H 0.074 0.926 13 C 0.067 3.933 14 N -0.900 5.900 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.220 4.220 20 C 0.560 3.440 21 O -0.457 6.457 22 O -0.504 6.504 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.243 18.544 -3.457 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.009 4.009 3 C -0.187 4.187 4 C -0.068 4.068 5 C -0.237 4.237 6 C 0.136 3.864 7 O -0.222 6.222 8 C -0.018 4.018 9 C -0.140 4.140 10 C -0.046 4.046 11 C -0.561 4.561 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.223 4.223 20 C 0.399 3.601 21 O -0.340 6.340 22 O -0.313 6.313 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -17.502 17.543 -2.573 24.914 hybrid contribution 1.299 1.256 -0.428 1.857 sum -16.203 18.800 -3.001 25.000 Atomic orbital electron populations 1.20938 0.90243 1.03313 1.03549 1.19667 0.95863 0.90840 0.94522 1.20824 0.94149 0.97231 1.06499 1.21133 0.94030 0.97722 0.93886 1.21333 1.01139 0.91653 1.09532 1.18971 0.89825 0.86174 0.91424 1.86116 1.22271 1.27283 1.86495 1.23352 0.75185 1.02092 1.01201 1.21556 0.97549 0.91775 1.03120 1.19508 0.89927 0.98619 0.96522 1.21055 0.92272 0.91502 1.51311 0.90772 1.25022 0.98162 0.95758 0.94469 1.69905 1.12161 1.21143 1.50662 0.86772 0.80293 0.83609 0.78548 1.20201 1.21240 1.19100 1.19412 0.91325 0.94304 1.17244 1.19953 0.75077 0.82200 0.82881 1.90880 1.50860 1.64579 1.27719 1.84544 1.75086 1.54264 1.17448 0.89951 0.90307 0.91415 0.85198 0.85157 0.84332 0.91845 0.91859 0.91385 0.91413 0.96343 0.96760 0.92593 0.72678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.62 36.01 0.35 -0.57 16 2 C -0.01 -0.08 5.91 -104.22 -0.62 -0.70 16 3 C -0.17 -1.42 9.68 -39.63 -0.38 -1.81 16 4 C -0.05 -0.44 10.03 -39.53 -0.40 -0.84 16 5 C -0.22 -2.46 9.03 -39.47 -0.36 -2.81 16 6 C 0.18 2.51 6.70 -38.67 -0.26 2.25 16 7 O -0.31 -4.99 9.59 -18.61 -0.18 -5.17 16 8 C 0.06 0.88 4.74 37.15 0.18 1.05 16 9 C -0.10 -2.01 5.52 -26.73 -0.15 -2.16 16 10 C -0.01 -0.19 4.04 -27.88 -0.11 -0.31 16 11 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 12 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 15 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 19 C -0.22 -2.78 5.56 -104.86 -0.58 -3.36 16 20 C 0.56 8.08 5.84 34.46 0.20 8.28 16 21 O -0.46 -8.50 17.95 -19.28 -0.35 -8.84 16 22 O -0.50 -5.83 13.48 -40.64 -0.55 -6.38 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 25 H 0.07 0.51 7.09 -51.93 -0.37 0.14 16 26 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 28 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 29 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 30 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.42 2.40 8.96 45.56 0.41 2.80 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -34.85 312.37 -6.80 -41.64 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.97 Total: -1.36 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.56 Total: -14.27 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.86 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.07 Total: -20.39 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.85 -6.80 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706612183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.592 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds