Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37820 * 120.04490 * 2 1 4 4 C 1.38516 * 120.30573 * 180.25362 * 3 2 1 5 5 C 1.38100 * 120.40307 * 359.78645 * 4 3 2 6 6 C 1.38671 * 120.08910 * 359.95739 * 5 4 3 7 7 O 1.35638 * 120.15393 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00118 * 359.97365 * 7 6 5 9 9 C 1.52995 * 109.47288 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.47359 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47410 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99516 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00331 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00377 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99795 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47211 * 89.99832 * 15 13 11 17 17 H 1.48501 * 109.47290 * 209.99960 * 15 13 11 18 18 H 1.48503 * 109.47259 * 330.00156 * 15 13 11 19 19 C 1.39723 * 120.05266 * 179.76629 * 2 1 3 20 20 C 1.47402 * 120.19680 * 0.02562 * 19 2 1 21 21 O 1.21513 * 120.00149 * 269.72615 * 20 19 2 22 22 O 1.34754 * 119.99824 * 89.44687 * 20 19 2 23 23 H 1.08998 * 109.47382 * 270.23238 * 1 2 3 24 24 H 1.08997 * 109.47409 * 30.23941 * 1 2 3 25 25 H 1.09007 * 109.46740 * 150.23248 * 1 2 3 26 26 H 1.08001 * 119.84490 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.79861 * 179.76144 * 4 3 2 28 28 H 1.07997 * 119.95477 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47234 * 300.00355 * 8 7 6 30 30 H 1.08997 * 109.47101 * 60.00234 * 8 7 6 31 31 H 1.08999 * 109.47030 * 300.00182 * 9 8 7 32 32 H 1.08997 * 109.47548 * 60.00232 * 9 8 7 33 33 H 1.08999 * 109.46514 * 300.00207 * 10 9 8 34 34 H 1.08997 * 109.46823 * 59.99516 * 10 9 8 35 35 H 0.97000 * 120.00226 * 179.97438 * 14 13 11 36 36 H 0.96692 * 117.00023 * 0.27887 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1930 0.0000 4 6 3.5822 1.1993 -0.0053 5 6 4.2865 0.0114 -0.0062 6 6 3.6090 -1.1985 -0.0009 7 8 4.2995 -2.3660 -0.0012 8 6 5.7256 -2.2763 -0.0078 9 6 6.3252 -3.6839 -0.0078 10 6 7.8522 -3.5879 -0.0142 11 6 8.4428 -4.9743 -0.0149 12 1 7.7938 -5.8377 -0.0107 13 6 9.8114 -5.1407 -0.0208 14 7 10.3268 -6.3506 -0.0209 15 14 10.9337 -3.6475 -0.0288 16 1 11.2375 -3.2491 1.3691 17 1 12.1972 -3.9816 -0.7339 18 1 10.2587 -2.5246 -0.7278 19 6 2.2068 -1.2094 0.0049 20 6 1.4753 -2.4891 0.0096 21 8 1.1778 -3.0151 1.0638 22 8 1.1317 -3.0730 -1.1553 23 1 -0.3634 0.0042 1.0276 24 1 -0.3634 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6553 2.1273 0.0004 27 1 4.1146 2.1389 -0.0092 28 1 5.3664 0.0248 -0.0107 29 1 6.0520 -1.7427 -0.9004 30 1 6.0600 -1.7387 0.8794 31 1 5.9988 -4.2178 0.8846 32 1 5.9909 -4.2213 -0.8953 33 1 8.1788 -3.0538 -0.9065 34 1 8.1862 -3.0507 0.8734 35 1 11.2897 -6.4677 -0.0254 36 1 1.3901 -2.6171 -1.9679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706612183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = -142.899300 kcal Electronic energy + Delta-G solvation = -19223.170578 eV Core-core repulsion = 16057.174614 eV Total energy + Delta-G solvation = -3165.995963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86995 -40.40085 -38.76992 -37.54049 -36.05482 -33.98909 -33.62348 -31.66170 -29.22107 -28.16619 -25.36333 -25.05289 -22.84946 -22.40184 -21.78346 -19.70424 -19.02516 -18.52823 -17.62195 -17.57137 -17.21794 -16.38390 -16.03142 -15.97628 -15.30065 -15.09071 -14.81852 -14.79299 -14.49565 -14.46644 -13.69171 -13.31493 -13.23070 -12.85398 -12.75370 -12.73933 -12.63583 -12.27032 -12.10199 -11.88843 -11.76150 -11.49966 -11.41552 -11.30806 -10.79032 -9.97973 -9.31072 -8.31136 -6.37824 -0.02792 0.31037 1.01812 1.37039 1.39729 1.51294 2.00859 2.29897 2.35788 2.55014 3.03921 3.48121 3.68215 3.83801 3.97933 4.01516 4.10942 4.19948 4.30203 4.38683 4.59596 4.66449 4.68446 4.70970 4.79648 4.90848 5.09789 5.15962 5.33739 5.36796 5.42805 5.46438 5.59748 5.71821 6.14641 6.22123 6.27636 6.70255 6.70799 7.26823 8.86091 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.003997 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.201742 B = 7003.439140 C = 7785.159060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.010 4.010 3 C -0.157 4.157 4 C -0.042 4.042 5 C -0.224 4.224 6 C 0.153 3.847 7 O -0.338 6.338 8 C 0.068 3.932 9 C -0.098 4.098 10 C -0.004 4.004 11 C -0.542 4.542 12 H 0.025 0.975 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.958 3.042 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.236 1.236 19 C -0.236 4.236 20 C 0.565 3.435 21 O -0.513 6.513 22 O -0.506 6.506 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.356 23.332 -4.159 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.010 4.010 3 C -0.175 4.175 4 C -0.060 4.060 5 C -0.243 4.243 6 C 0.107 3.893 7 O -0.252 6.252 8 C -0.006 4.006 9 C -0.136 4.136 10 C -0.041 4.041 11 C -0.579 4.579 12 H 0.043 0.957 13 C -0.196 4.196 14 N -0.594 5.594 15 Si 0.780 3.220 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.159 1.159 19 C -0.238 4.238 20 C 0.406 3.594 21 O -0.401 6.401 22 O -0.319 6.319 23 H 0.098 0.902 24 H 0.129 0.871 25 H 0.079 0.921 26 H 0.184 0.816 27 H 0.183 0.817 28 H 0.165 0.835 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -17.645 22.362 -3.321 28.678 hybrid contribution 1.194 -0.270 -0.260 1.252 sum -16.451 22.092 -3.581 27.776 Atomic orbital electron populations 1.21016 0.88732 1.04560 1.03743 1.19999 0.97020 0.90299 0.93715 1.21288 0.94273 0.97896 1.03999 1.21573 0.94412 0.98153 0.91865 1.21532 1.01744 0.91477 1.09514 1.19221 0.90053 0.86162 0.93883 1.86025 1.22136 1.29344 1.87664 1.23054 0.75568 0.98992 1.02978 1.21329 0.96064 0.94636 1.01570 1.19410 0.91676 0.95371 0.97634 1.21449 0.92353 0.92949 1.51189 0.95671 1.26135 1.00127 0.99582 0.93762 1.70084 1.12796 1.24233 1.52262 0.85547 0.77529 0.79528 0.79357 1.19069 1.21039 1.15877 1.19443 0.91099 0.94242 1.19007 1.20302 0.73959 0.82462 0.82655 1.90838 1.53292 1.66179 1.29768 1.84468 1.74669 1.54732 1.18025 0.90217 0.87137 0.92114 0.81592 0.81713 0.83471 0.89511 0.90520 0.93522 0.92633 0.94688 0.95314 0.92369 0.69940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.62 71.24 0.69 -0.85 16 2 C -0.01 -0.17 5.91 -19.60 -0.12 -0.29 16 3 C -0.16 -1.93 9.68 22.24 0.22 -1.72 16 4 C -0.04 -0.56 10.03 22.30 0.22 -0.34 16 5 C -0.22 -4.38 9.03 22.34 0.20 -4.18 16 6 C 0.15 4.01 6.70 22.86 0.15 4.16 16 7 O -0.34 -10.92 9.59 -89.52 -0.86 -11.77 16 8 C 0.07 2.06 4.74 71.98 0.34 2.40 16 9 C -0.10 -3.92 5.52 30.59 0.17 -3.76 16 10 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 11 C -0.54 -31.62 9.66 25.60 0.25 -31.38 16 12 H 0.02 1.64 7.99 -2.91 -0.02 1.62 16 13 C 0.00 0.03 5.47 84.65 0.46 0.49 16 14 N -0.95 -60.47 13.96 21.44 0.30 -60.17 16 15 Si 0.96 42.93 27.47 68.60 1.88 44.81 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 19 C -0.24 -5.75 5.56 -20.02 -0.11 -5.86 16 20 C 0.56 16.70 5.84 70.24 0.41 17.11 16 21 O -0.51 -20.04 17.95 19.79 0.36 -19.68 16 22 O -0.51 -11.86 13.48 -56.65 -0.76 -12.63 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 0.65 8.09 -2.39 -0.02 0.63 16 25 H 0.06 0.84 7.09 -2.38 -0.02 0.82 16 26 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 27 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 28 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 29 H 0.09 2.19 7.66 -2.39 -0.02 2.17 16 30 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 34 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.44 4.85 8.96 -74.06 -0.66 4.18 16 Total: -1.00 -80.40 312.37 4.30 -76.11 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.38 Total: 7.57 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.00 Total: -24.23 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.30 Total: -60.17 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.27 Total: -44.08 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Total: -80.40 4.30 -76.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706612183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.794 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds