Wall clock time and date at job start Mon Mar 30 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00037 * 2 1 4 4 C 1.39045 * 119.88654 * 359.97438 * 3 2 1 5 5 C 1.38022 * 120.40525 * 180.02562 * 4 3 2 6 6 C 1.38661 * 120.17383 * 0.02562 * 5 4 3 7 7 O 1.35676 * 120.11568 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00259 * 354.51473 * 7 6 5 9 9 H 1.08996 * 109.46607 * 324.93419 * 8 7 6 10 10 C 1.53002 * 109.46430 * 84.92814 * 8 7 6 11 11 C 1.52990 * 109.47362 * 204.92940 * 8 7 6 12 12 C 1.50699 * 109.47083 * 65.00010 * 11 8 7 13 13 H 1.07995 * 120.00057 * 0.02562 * 12 11 8 14 14 C 1.37883 * 119.99802 * 179.72304 * 12 11 8 15 15 N 1.31517 * 120.00321 * 0.27912 * 14 12 11 16 16 Si 1.86800 * 119.99731 * 180.27839 * 14 12 11 17 17 H 1.48500 * 109.47378 * 60.00000 * 16 14 12 18 18 H 1.48503 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47071 * 299.99755 * 16 14 12 20 20 C 1.40397 * 119.77236 * 0.27481 * 6 5 4 21 21 C 1.46781 * 120.20202 * 179.70421 * 20 6 5 22 22 O 1.21303 * 119.99886 * 359.97438 * 21 20 6 23 23 C 1.38127 * 119.89331 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46822 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47178 * 60.00200 * 1 2 3 27 27 H 1.08002 * 119.80246 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.91490 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47310 * 299.99717 * 10 8 7 30 30 H 1.09003 * 109.46959 * 60.00713 * 10 8 7 31 31 H 1.09004 * 109.46739 * 179.97438 * 10 8 7 32 32 H 1.09005 * 109.47217 * 305.00321 * 11 8 7 33 33 H 1.09002 * 109.47523 * 185.00336 * 11 8 7 34 34 H 0.96995 * 119.99822 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.00336 * 179.97438 * 21 20 6 36 36 H 1.08001 * 120.08433 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2868 2.3763 -0.0005 5 6 1.9022 3.6117 -0.0011 6 6 3.2860 3.7010 -0.0016 7 8 3.8897 4.9160 -0.0016 8 6 3.0434 6.0610 -0.1228 9 1 2.2047 5.8251 -0.7776 10 6 2.5169 6.4543 1.2589 11 6 3.8412 7.2246 -0.7147 12 6 4.2556 6.8844 -2.1231 13 1 3.9774 5.9336 -2.5531 14 6 4.9847 7.7896 -2.8649 15 7 5.3231 8.9477 -2.3414 16 14 5.4917 7.3711 -4.6133 17 1 4.2793 7.1274 -5.4355 18 1 6.2620 8.5024 -5.1896 19 1 6.3375 6.1505 -4.6047 20 6 4.0602 2.5298 -0.0075 21 6 5.5256 2.6133 -0.0146 22 8 6.0713 3.6967 -0.0160 23 6 3.4259 1.2814 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2086 2.3139 -0.0005 28 1 1.3045 4.5112 -0.0019 29 1 1.9485 5.6254 1.6806 30 1 3.3557 6.6902 1.9138 31 1 1.8717 7.3280 1.1666 32 1 4.7289 7.4025 -0.1077 33 1 3.2222 8.1217 -0.7248 34 1 5.8356 9.5846 -2.8634 35 1 6.1180 1.7103 -0.0187 36 1 4.0138 0.3753 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709957223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:51 Heat of formation + Delta-G solvation = -86.033949 kcal Electronic energy + Delta-G solvation = -19863.123629 eV Core-core repulsion = 16699.593532 eV Total energy + Delta-G solvation = -3163.530097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42203 -39.00076 -38.03901 -36.16504 -33.37252 -31.73364 -31.23612 -29.24648 -27.52543 -27.05604 -24.34352 -23.52409 -22.66641 -20.68627 -19.99135 -18.01256 -17.36277 -16.58589 -16.31476 -15.79183 -15.48396 -14.81026 -14.68694 -14.47936 -14.30636 -13.76273 -13.49310 -13.18704 -12.74793 -12.56005 -12.37576 -12.14736 -11.88386 -11.66903 -11.42985 -11.31974 -10.93639 -10.71562 -10.63099 -10.28909 -9.95290 -9.38818 -9.23011 -9.06843 -8.98478 -8.32418 -7.48385 -5.95831 -3.96298 0.82580 1.61685 2.79249 3.23411 3.38108 3.41892 3.46244 3.82277 3.96842 4.49190 4.51426 4.75029 4.91216 4.99407 5.00745 5.24701 5.31686 5.40538 5.43100 5.61921 5.65200 5.70474 5.78218 5.92525 6.02062 6.17004 6.28773 6.40276 6.54407 6.62311 6.76172 7.32703 7.50929 7.64097 7.92950 7.99958 8.12364 8.41352 9.05581 9.66224 11.15860 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.005374 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.409466 B = 5208.639484 C = 5392.692987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.055 3.945 4 C -0.131 4.131 5 C -0.194 4.194 6 C 0.175 3.825 7 O -0.258 6.258 8 C 0.080 3.920 9 H 0.062 0.938 10 C -0.177 4.177 11 C 0.028 3.972 12 C -0.510 4.510 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.201 4.201 21 C 0.368 3.632 22 O -0.419 6.419 23 C -0.066 4.066 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.097 0.903 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -16.176 6.478 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.011 3.989 4 C -0.150 4.150 5 C -0.212 4.212 6 C 0.125 3.875 7 O -0.168 6.168 8 C 0.024 3.976 9 H 0.080 0.920 10 C -0.235 4.235 11 C -0.009 4.009 12 C -0.548 4.548 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.203 4.203 21 C 0.224 3.776 22 O -0.289 6.289 23 C -0.085 4.085 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.893 -15.501 6.451 19.000 hybrid contribution -0.453 -0.100 -1.017 1.118 sum -9.346 -15.601 5.434 18.981 Atomic orbital electron populations 1.22979 0.78970 1.03540 1.01136 1.86043 1.20825 1.26627 1.90074 1.18609 0.92107 0.84124 1.04097 1.21205 0.99863 0.91776 1.02161 1.21227 0.93881 0.98531 1.07592 1.19441 0.90590 0.87028 0.90408 1.86491 1.35708 1.10806 1.83777 1.22997 0.93777 0.85858 0.94928 0.92039 1.22421 1.01527 1.01217 0.98303 1.19239 0.95687 0.89919 0.96041 1.21021 1.34183 1.01744 0.97832 0.92880 1.24946 0.95910 0.95028 0.98346 1.69936 1.39032 1.07553 1.37166 0.86654 0.78687 0.77966 0.84719 1.20365 1.21257 1.20157 1.20228 0.96939 0.90605 1.12500 1.23623 0.87836 0.93088 0.73038 1.90704 1.73843 1.32565 1.31812 1.20318 0.91394 0.96743 1.00002 0.88553 0.92967 0.92879 0.85340 0.84324 0.93427 0.91731 0.91278 0.95075 0.94422 0.92947 0.88701 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.74 10.49 -19.70 -0.21 -3.94 16 3 C 0.05 0.72 6.67 -39.32 -0.26 0.45 16 4 C -0.13 -1.71 9.02 -39.36 -0.36 -2.06 16 5 C -0.19 -3.01 8.23 -39.50 -0.32 -3.33 16 6 C 0.18 3.24 6.62 -38.61 -0.26 2.99 16 7 O -0.26 -5.73 7.62 -40.68 -0.31 -6.04 16 8 C 0.08 1.69 2.17 -26.73 -0.06 1.64 16 9 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 10 C -0.18 -3.04 9.17 37.16 0.34 -2.70 16 11 C 0.03 0.73 4.68 -27.89 -0.13 0.60 16 12 C -0.51 -14.89 8.88 -34.44 -0.31 -15.20 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 16 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 C -0.20 -3.25 5.88 -104.96 -0.62 -3.87 16 21 C 0.37 5.96 11.44 34.18 0.39 6.35 16 22 O -0.42 -9.17 15.97 -16.41 -0.26 -9.43 16 23 C -0.07 -0.86 9.73 -38.95 -0.38 -1.24 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 27 H 0.13 1.29 6.27 -52.49 -0.33 0.96 16 28 H 0.14 2.03 5.42 -52.49 -0.28 1.75 16 29 H 0.05 0.71 6.91 -51.93 -0.36 0.35 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -34.75 309.07 -6.06 -40.81 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.59 Total: -3.35 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.06 Total: -13.53 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.78 Total: -19.42 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.75 -6.06 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709957223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.223 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds