Wall clock time and date at job start Mon Mar 30 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00037 * 2 1 4 4 C 1.39045 * 119.88654 * 359.97438 * 3 2 1 5 5 C 1.38022 * 120.40525 * 180.02562 * 4 3 2 6 6 C 1.38661 * 120.17383 * 0.02562 * 5 4 3 7 7 O 1.35676 * 120.11568 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00259 * 354.51473 * 7 6 5 9 9 H 1.08996 * 109.46607 * 324.93419 * 8 7 6 10 10 C 1.53002 * 109.46430 * 84.92814 * 8 7 6 11 11 C 1.52990 * 109.47362 * 204.92940 * 8 7 6 12 12 C 1.50699 * 109.47083 * 65.00010 * 11 8 7 13 13 H 1.07995 * 120.00057 * 0.02562 * 12 11 8 14 14 C 1.37883 * 119.99802 * 179.72304 * 12 11 8 15 15 N 1.31517 * 120.00321 * 0.27912 * 14 12 11 16 16 Si 1.86800 * 119.99731 * 180.27839 * 14 12 11 17 17 H 1.48500 * 109.47378 * 60.00000 * 16 14 12 18 18 H 1.48503 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47071 * 299.99755 * 16 14 12 20 20 C 1.40397 * 119.77236 * 0.27481 * 6 5 4 21 21 C 1.46781 * 120.20202 * 179.70421 * 20 6 5 22 22 O 1.21303 * 119.99886 * 359.97438 * 21 20 6 23 23 C 1.38127 * 119.89331 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46822 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47178 * 60.00200 * 1 2 3 27 27 H 1.08002 * 119.80246 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.91490 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47310 * 299.99717 * 10 8 7 30 30 H 1.09003 * 109.46959 * 60.00713 * 10 8 7 31 31 H 1.09004 * 109.46739 * 179.97438 * 10 8 7 32 32 H 1.09005 * 109.47217 * 305.00321 * 11 8 7 33 33 H 1.09002 * 109.47523 * 185.00336 * 11 8 7 34 34 H 0.96995 * 119.99822 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.00336 * 179.97438 * 21 20 6 36 36 H 1.08001 * 120.08433 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2868 2.3763 -0.0005 5 6 1.9022 3.6117 -0.0011 6 6 3.2860 3.7010 -0.0016 7 8 3.8897 4.9160 -0.0016 8 6 3.0434 6.0610 -0.1228 9 1 2.2047 5.8251 -0.7776 10 6 2.5169 6.4543 1.2589 11 6 3.8412 7.2246 -0.7147 12 6 4.2556 6.8844 -2.1231 13 1 3.9774 5.9336 -2.5531 14 6 4.9847 7.7896 -2.8649 15 7 5.3231 8.9477 -2.3414 16 14 5.4917 7.3711 -4.6133 17 1 4.2793 7.1274 -5.4355 18 1 6.2620 8.5024 -5.1896 19 1 6.3375 6.1505 -4.6047 20 6 4.0602 2.5298 -0.0075 21 6 5.5256 2.6133 -0.0146 22 8 6.0713 3.6967 -0.0160 23 6 3.4259 1.2814 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2086 2.3139 -0.0005 28 1 1.3045 4.5112 -0.0019 29 1 1.9485 5.6254 1.6806 30 1 3.3557 6.6902 1.9138 31 1 1.8717 7.3280 1.1666 32 1 4.7289 7.4025 -0.1077 33 1 3.2222 8.1217 -0.7248 34 1 5.8356 9.5846 -2.8634 35 1 6.1180 1.7103 -0.0187 36 1 4.0138 0.3753 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709957223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:50 Heat of formation + Delta-G solvation = -108.333437 kcal Electronic energy + Delta-G solvation = -19864.090607 eV Core-core repulsion = 16699.593532 eV Total energy + Delta-G solvation = -3164.497075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60998 -40.11629 -39.48591 -37.35220 -35.39304 -33.44622 -32.49637 -30.31422 -29.41333 -27.93711 -25.53013 -25.29670 -24.16129 -21.82547 -21.55611 -19.19485 -18.59579 -18.52214 -17.73335 -16.78912 -16.62719 -16.44481 -16.12995 -15.87479 -15.51505 -15.16336 -14.96076 -14.42084 -14.35636 -13.78102 -13.70294 -13.43973 -13.40681 -13.25608 -13.03208 -12.67051 -12.65039 -12.37472 -12.12500 -11.83136 -11.46831 -11.36026 -10.96126 -10.61853 -10.54169 -10.10704 -8.67340 -8.22361 -6.30757 -0.31778 0.46286 1.33496 1.38479 1.45628 1.60330 2.34605 2.38346 2.48152 2.80435 3.12152 3.41048 3.73352 3.89800 4.00925 4.12212 4.21738 4.34322 4.39207 4.47538 4.50137 4.56680 4.65999 4.79919 4.81360 4.92355 5.01175 5.13750 5.23295 5.29302 5.33072 5.45195 5.55610 5.73854 6.16658 6.42798 6.65789 6.74693 6.80016 7.35768 8.89599 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.005374 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.409466 B = 5208.639484 C = 5392.692987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.061 3.939 4 C -0.123 4.123 5 C -0.200 4.200 6 C 0.131 3.869 7 O -0.296 6.296 8 C 0.087 3.913 9 H 0.069 0.931 10 C -0.165 4.165 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.046 0.954 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.959 3.041 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.278 1.278 20 C -0.219 4.219 21 C 0.374 3.626 22 O -0.490 6.490 23 C -0.055 4.055 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.084 0.916 32 H -0.009 1.009 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -19.204 6.006 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.016 3.984 4 C -0.141 4.141 5 C -0.219 4.219 6 C 0.083 3.917 7 O -0.208 6.208 8 C 0.031 3.969 9 H 0.087 0.913 10 C -0.223 4.223 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.065 0.935 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.204 1.204 20 C -0.221 4.221 21 C 0.234 3.766 22 O -0.364 6.364 23 C -0.073 4.073 24 H 0.139 0.861 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.179 0.821 28 H 0.160 0.840 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.173 0.827 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.728 -18.574 5.987 22.269 hybrid contribution -0.009 0.621 -0.832 1.038 sum -10.737 -17.953 5.155 21.544 Atomic orbital electron populations 1.23333 0.76758 1.05617 1.02060 1.86056 1.23073 1.25482 1.89596 1.18779 0.92339 0.84840 1.02419 1.21526 1.01572 0.90689 1.00359 1.21306 0.92723 0.99908 1.07950 1.19909 0.92292 0.86197 0.93345 1.86402 1.36878 1.12172 1.85315 1.22677 0.92661 0.84585 0.96932 0.91309 1.22305 1.01409 1.02793 0.95762 1.19070 0.94614 0.92128 0.94757 1.21351 1.34433 1.01440 0.99263 0.93539 1.25859 0.95856 0.94887 1.02894 1.70058 1.39692 1.08521 1.38895 0.85599 0.78787 0.77709 0.79566 1.18622 1.20142 1.20383 1.20513 0.97243 0.91141 1.13170 1.24575 0.88387 0.93700 0.69902 1.90695 1.74906 1.35390 1.35418 1.20621 0.92040 0.96571 0.98114 0.86126 0.91774 0.92127 0.82095 0.83976 0.90718 0.93025 0.89752 0.99065 0.95506 0.92691 0.82701 0.80668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.23 10.49 -93.40 -0.98 -7.21 16 3 C 0.06 1.38 6.67 22.44 0.15 1.53 16 4 C -0.12 -2.82 9.02 22.41 0.20 -2.62 16 5 C -0.20 -5.97 8.23 22.32 0.18 -5.79 16 6 C 0.13 4.86 6.62 22.90 0.15 5.02 16 7 O -0.30 -13.77 7.62 -68.95 -0.53 -14.29 16 8 C 0.09 3.84 2.17 30.59 0.07 3.90 16 9 H 0.07 2.85 6.31 -2.39 -0.02 2.83 16 10 C -0.17 -5.76 9.17 71.98 0.66 -5.10 16 11 C 0.03 1.74 4.68 29.84 0.14 1.88 16 12 C -0.53 -32.04 8.88 25.60 0.23 -31.82 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -58.91 13.29 21.45 0.28 -58.63 16 16 Si 0.96 47.17 29.54 68.60 2.03 49.20 16 17 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 20 C -0.22 -6.89 5.88 -20.08 -0.12 -7.01 16 21 C 0.37 11.94 11.44 70.06 0.80 12.74 16 22 O -0.49 -22.37 15.97 17.88 0.29 -22.09 16 23 C -0.05 -1.28 9.73 22.68 0.22 -1.06 16 24 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.59 7.65 -2.39 -0.02 0.57 16 26 H 0.06 0.61 7.65 -2.39 -0.02 0.59 16 27 H 0.16 2.55 6.27 -2.91 -0.02 2.53 16 28 H 0.14 4.01 5.42 -2.91 -0.02 3.99 16 29 H 0.07 2.17 6.91 -2.39 -0.02 2.15 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -80.40 309.07 6.43 -73.97 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.08 Total: 5.46 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.26 Total: -26.39 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.22 Total: -43.59 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -80.40 6.43 -73.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709957223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.367 kcal (2) G-P(sol) polarization free energy of solvation -80.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds