Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 117.00031 * 2 1 4 4 C 1.39045 * 119.88966 * 359.97438 * 3 2 1 5 5 C 1.38024 * 120.40459 * 180.02562 * 4 3 2 6 6 C 1.38658 * 120.17268 * 0.02562 * 5 4 3 7 7 O 1.35676 * 120.11409 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00264 * 5.41392 * 7 6 5 9 9 H 1.09002 * 109.46993 * 35.20510 * 8 7 6 10 10 C 1.53001 * 109.46806 * 275.21147 * 8 7 6 11 11 C 1.52999 * 109.47495 * 155.21029 * 8 7 6 12 12 C 1.50701 * 109.46940 * 294.99859 * 11 8 7 13 13 H 1.07999 * 120.00005 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99666 * 180.27715 * 12 11 8 15 15 N 1.31517 * 119.99527 * 179.72488 * 14 12 11 16 16 Si 1.86799 * 120.00349 * 359.72130 * 14 12 11 17 17 H 1.48498 * 109.46778 * 89.99882 * 16 14 12 18 18 H 1.48498 * 109.47484 * 210.00424 * 16 14 12 19 19 H 1.48502 * 109.47006 * 330.00447 * 16 14 12 20 20 C 1.40396 * 119.77137 * 0.27057 * 6 5 4 21 21 C 1.46795 * 120.19657 * 179.70087 * 20 6 5 22 22 O 1.21297 * 119.99663 * 180.02562 * 21 20 6 23 23 C 1.38128 * 119.88860 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46808 * 60.00279 * 1 2 3 25 25 H 1.08994 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46962 * 300.00634 * 1 2 3 27 27 H 1.08005 * 119.79563 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.91137 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47114 * 59.99762 * 10 8 7 30 30 H 1.08998 * 109.47038 * 179.97438 * 10 8 7 31 31 H 1.08997 * 109.47522 * 299.99432 * 10 8 7 32 32 H 1.09002 * 109.47041 * 174.99863 * 11 8 7 33 33 H 1.08999 * 109.47046 * 54.99860 * 11 8 7 34 34 H 0.97005 * 119.99900 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99912 * 0.02562 * 21 20 6 36 36 H 1.07998 * 120.08526 * 359.97214 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2869 2.3763 -0.0005 5 6 1.9024 3.6117 -0.0011 6 6 3.2861 3.7009 -0.0016 7 8 3.8900 4.9158 -0.0016 8 6 3.0437 6.0609 0.1191 9 1 2.2060 5.8260 0.7757 10 6 2.5148 6.4520 -1.2623 11 6 3.8423 7.2256 0.7079 12 6 4.2590 6.8877 2.1161 13 1 3.9817 5.9375 2.5481 14 6 4.9891 7.7942 2.8552 15 7 5.3482 7.5015 4.0861 16 14 5.4683 9.4380 2.1083 17 1 4.4076 10.4381 2.3910 18 1 6.7508 9.8958 2.7004 19 1 5.6272 9.2868 0.6396 20 6 4.0602 2.5296 -0.0074 21 6 5.5257 2.6131 -0.0146 22 8 6.1909 1.5988 -0.0201 23 6 3.4259 1.2812 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2086 2.3139 -0.0005 28 1 1.3047 4.5112 -0.0019 29 1 1.9458 5.6222 -1.6818 30 1 1.8689 7.3251 -1.1702 31 1 3.3524 6.6869 -1.9190 32 1 3.2230 8.1226 0.7175 33 1 4.7289 7.4027 0.0991 34 1 5.8621 8.1391 4.6060 35 1 6.0116 3.5776 -0.0151 36 1 4.0137 0.3752 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709957224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = -87.136540 kcal Electronic energy + Delta-G solvation = -19686.182153 eV Core-core repulsion = 16522.604245 eV Total energy + Delta-G solvation = -3163.577909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49874 -39.03526 -38.44179 -36.18868 -33.54611 -31.97079 -31.16586 -29.43284 -28.14148 -27.11409 -24.65422 -23.49904 -22.25522 -20.85958 -20.02197 -18.25400 -17.48557 -16.83132 -16.68313 -15.78906 -15.36474 -14.98059 -14.84976 -14.61456 -14.34958 -13.81176 -13.66645 -13.33090 -12.89635 -12.65614 -12.47363 -12.34181 -12.24786 -11.94099 -11.78405 -11.57046 -11.02911 -10.78722 -10.66064 -10.27550 -9.87108 -9.65827 -9.44206 -9.30468 -9.02500 -8.61040 -7.58651 -6.09538 -4.08869 0.74904 1.55913 2.67283 3.23039 3.24962 3.34196 3.35340 3.58727 3.90342 4.38629 4.56944 4.74160 4.94272 5.00030 5.02146 5.13565 5.24253 5.30114 5.33586 5.44361 5.50581 5.59955 5.73759 5.89892 5.96254 6.11263 6.18657 6.26448 6.36058 6.43644 6.54894 6.92456 7.06447 7.35261 7.63422 7.70981 7.85977 8.44069 8.94455 9.50499 11.03702 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.005133 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.872113 B = 5453.608212 C = 5889.006033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.058 3.942 4 C -0.129 4.129 5 C -0.192 4.192 6 C 0.173 3.827 7 O -0.283 6.283 8 C 0.094 3.906 9 H 0.071 0.929 10 C -0.182 4.182 11 C -0.011 4.011 12 C -0.520 4.520 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.197 4.197 21 C 0.397 3.603 22 O -0.476 6.476 23 C -0.054 4.054 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -8.363 -10.670 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.014 3.986 4 C -0.148 4.148 5 C -0.210 4.210 6 C 0.124 3.876 7 O -0.195 6.195 8 C 0.039 3.961 9 H 0.089 0.911 10 C -0.239 4.239 11 C -0.048 4.048 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.199 4.199 21 C 0.257 3.743 22 O -0.351 6.351 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.649 -8.938 -10.528 16.847 hybrid contribution -0.468 1.260 -0.125 1.350 sum -10.118 -7.677 -10.653 16.577 Atomic orbital electron populations 1.22997 0.78906 1.03645 1.01123 1.86073 1.20868 1.26552 1.89924 1.18652 0.92034 0.84256 1.03622 1.21227 0.99953 0.91721 1.01905 1.21164 0.93726 0.98521 1.07620 1.19251 0.90797 0.86073 0.91433 1.86170 1.36851 1.11396 1.85112 1.22683 0.93575 0.84810 0.95081 0.91138 1.22468 1.01700 1.01663 0.98082 1.19740 0.95961 0.91514 0.97578 1.20981 1.34716 1.04282 0.95789 0.90851 1.24992 0.95346 0.98269 0.94641 1.69908 1.38403 1.36164 1.09237 0.86836 0.78294 0.84400 0.80106 1.20295 1.21221 1.18915 1.20056 0.96810 0.90544 1.12494 1.23886 0.87313 0.94101 0.68960 1.90472 1.67427 1.40868 1.36285 1.20418 0.91274 0.97489 0.98071 0.92941 0.88489 0.92803 0.85161 0.84201 0.92856 0.91146 0.91657 0.94796 0.95139 0.92622 0.86572 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.09 10.49 -19.69 -0.21 -4.30 16 3 C 0.06 0.82 6.67 -39.32 -0.26 0.56 16 4 C -0.13 -1.66 9.02 -39.36 -0.36 -2.02 16 5 C -0.19 -2.77 8.22 -39.50 -0.32 -3.09 16 6 C 0.17 2.91 6.62 -38.61 -0.26 2.65 16 7 O -0.28 -5.30 8.73 -18.73 -0.16 -5.47 16 8 C 0.09 1.69 2.17 -26.73 -0.06 1.63 16 9 H 0.07 1.24 6.32 -51.93 -0.33 0.92 16 10 C -0.18 -2.54 9.17 37.16 0.34 -2.20 16 11 C -0.01 -0.24 3.75 -27.88 -0.10 -0.34 16 12 C -0.52 -14.09 9.43 -34.44 -0.32 -14.41 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 16 Si 0.88 20.75 27.46 -169.99 -4.67 16.08 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -5.95 6.55 56.52 0.37 -5.58 16 20 C -0.20 -3.27 5.88 -104.96 -0.62 -3.89 16 21 C 0.40 6.73 11.19 34.19 0.38 7.11 16 22 O -0.48 -8.96 17.16 5.54 0.10 -8.86 16 23 C -0.05 -0.83 9.53 -38.95 -0.37 -1.20 16 24 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 27 H 0.13 1.28 6.27 -52.48 -0.33 0.95 16 28 H 0.14 1.82 5.41 -52.49 -0.28 1.53 16 29 H 0.05 0.65 6.89 -51.93 -0.36 0.30 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.03 0.68 7.21 -51.93 -0.37 0.30 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.12 1.87 7.63 -52.49 -0.40 1.47 16 36 H 0.14 2.15 7.65 -52.49 -0.40 1.75 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -31.75 306.46 -5.12 -36.87 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.52 Total: -0.49 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.06 Total: -12.12 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.27 Total: -18.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.75 -5.12 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709957224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.267 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds