Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 117.00031 * 2 1 4 4 C 1.39045 * 119.88966 * 359.97438 * 3 2 1 5 5 C 1.38024 * 120.40459 * 180.02562 * 4 3 2 6 6 C 1.38658 * 120.17268 * 0.02562 * 5 4 3 7 7 O 1.35676 * 120.11409 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00264 * 5.41392 * 7 6 5 9 9 H 1.09002 * 109.46993 * 35.20510 * 8 7 6 10 10 C 1.53001 * 109.46806 * 275.21147 * 8 7 6 11 11 C 1.52999 * 109.47495 * 155.21029 * 8 7 6 12 12 C 1.50701 * 109.46940 * 294.99859 * 11 8 7 13 13 H 1.07999 * 120.00005 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99666 * 180.27715 * 12 11 8 15 15 N 1.31517 * 119.99527 * 179.72488 * 14 12 11 16 16 Si 1.86799 * 120.00349 * 359.72130 * 14 12 11 17 17 H 1.48498 * 109.46778 * 89.99882 * 16 14 12 18 18 H 1.48498 * 109.47484 * 210.00424 * 16 14 12 19 19 H 1.48502 * 109.47006 * 330.00447 * 16 14 12 20 20 C 1.40396 * 119.77137 * 0.27057 * 6 5 4 21 21 C 1.46795 * 120.19657 * 179.70087 * 20 6 5 22 22 O 1.21297 * 119.99663 * 180.02562 * 21 20 6 23 23 C 1.38128 * 119.88860 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46808 * 60.00279 * 1 2 3 25 25 H 1.08994 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46962 * 300.00634 * 1 2 3 27 27 H 1.08005 * 119.79563 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.91137 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47114 * 59.99762 * 10 8 7 30 30 H 1.08998 * 109.47038 * 179.97438 * 10 8 7 31 31 H 1.08997 * 109.47522 * 299.99432 * 10 8 7 32 32 H 1.09002 * 109.47041 * 174.99863 * 11 8 7 33 33 H 1.08999 * 109.47046 * 54.99860 * 11 8 7 34 34 H 0.97005 * 119.99900 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99912 * 0.02562 * 21 20 6 36 36 H 1.07998 * 120.08526 * 359.97214 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2869 2.3763 -0.0005 5 6 1.9024 3.6117 -0.0011 6 6 3.2861 3.7009 -0.0016 7 8 3.8900 4.9158 -0.0016 8 6 3.0437 6.0609 0.1191 9 1 2.2060 5.8260 0.7757 10 6 2.5148 6.4520 -1.2623 11 6 3.8423 7.2256 0.7079 12 6 4.2590 6.8877 2.1161 13 1 3.9817 5.9375 2.5481 14 6 4.9891 7.7942 2.8552 15 7 5.3482 7.5015 4.0861 16 14 5.4683 9.4380 2.1083 17 1 4.4076 10.4381 2.3910 18 1 6.7508 9.8958 2.7004 19 1 5.6272 9.2868 0.6396 20 6 4.0602 2.5296 -0.0074 21 6 5.5257 2.6131 -0.0146 22 8 6.1909 1.5988 -0.0201 23 6 3.4259 1.2812 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2086 2.3139 -0.0005 28 1 1.3047 4.5112 -0.0019 29 1 1.9458 5.6222 -1.6818 30 1 1.8689 7.3251 -1.1702 31 1 3.3524 6.6869 -1.9190 32 1 3.2230 8.1226 0.7175 33 1 4.7289 7.4027 0.0991 34 1 5.8621 8.1391 4.6060 35 1 6.0116 3.5776 -0.0151 36 1 4.0137 0.3752 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709957224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = -107.717196 kcal Electronic energy + Delta-G solvation = -19687.074597 eV Core-core repulsion = 16522.604245 eV Total energy + Delta-G solvation = -3164.470353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68750 -40.15574 -39.82809 -37.37776 -35.32139 -33.65388 -32.39939 -30.54498 -29.77733 -27.95941 -25.86025 -25.04232 -23.73917 -22.05439 -21.44282 -19.45288 -18.91434 -18.60806 -17.91717 -16.69899 -16.52207 -16.45630 -16.14789 -16.06369 -15.65788 -15.23262 -15.08097 -14.61483 -14.49328 -13.93326 -13.76447 -13.54307 -13.50937 -13.27467 -13.06560 -12.65516 -12.46426 -12.23381 -11.90277 -11.75904 -11.56000 -11.32162 -11.05563 -10.81381 -10.73384 -10.20103 -8.75900 -8.24411 -6.28454 -0.46874 0.38147 1.39190 1.39522 1.42879 1.53251 2.24000 2.36882 2.39744 2.70358 3.12439 3.37509 3.67633 3.85156 4.00120 4.02315 4.19483 4.28046 4.36960 4.44593 4.45103 4.48101 4.73654 4.78976 4.82640 4.91892 4.97635 5.08814 5.14934 5.19893 5.25649 5.39091 5.47422 5.66092 6.27153 6.34667 6.37558 6.56460 6.78902 7.34810 8.92605 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.005133 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.872113 B = 5453.608212 C = 5889.006033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.064 3.936 4 C -0.116 4.116 5 C -0.190 4.190 6 C 0.153 3.847 7 O -0.308 6.308 8 C 0.093 3.907 9 H 0.070 0.930 10 C -0.171 4.171 11 C -0.012 4.012 12 C -0.521 4.521 13 H 0.028 0.972 14 C 0.003 3.997 15 N -0.954 5.954 16 Si 0.949 3.051 17 H -0.262 1.262 18 H -0.292 1.292 19 H -0.242 1.242 20 C -0.214 4.214 21 C 0.400 3.600 22 O -0.501 6.501 23 C -0.069 4.069 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.170 0.830 28 H 0.159 0.841 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.121 0.879 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.859 -7.523 -12.642 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.019 3.981 4 C -0.134 4.134 5 C -0.208 4.208 6 C 0.105 3.895 7 O -0.221 6.221 8 C 0.037 3.963 9 H 0.088 0.912 10 C -0.228 4.228 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.046 0.954 14 C -0.194 4.194 15 N -0.595 5.595 16 Si 0.772 3.228 17 H -0.187 1.187 18 H -0.218 1.218 19 H -0.165 1.165 20 C -0.216 4.216 21 C 0.262 3.738 22 O -0.378 6.378 23 C -0.088 4.088 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.082 0.918 27 H 0.187 0.813 28 H 0.176 0.824 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.143 -8.108 -12.527 19.239 hybrid contribution 0.175 0.825 0.542 1.002 sum -11.969 -7.283 -11.986 18.438 Atomic orbital electron populations 1.23381 0.76323 1.05722 1.02407 1.86074 1.23532 1.25831 1.89560 1.18734 0.91650 0.85404 1.02291 1.21595 1.01779 0.90420 0.99654 1.21407 0.92706 0.99960 1.06755 1.19411 0.91988 0.85203 0.92854 1.86101 1.37946 1.12230 1.85808 1.22617 0.92598 0.83533 0.97505 0.91214 1.22378 1.02105 1.03202 0.95133 1.19723 0.96835 0.94105 0.94275 1.21310 1.33919 1.02291 0.98363 0.95371 1.26007 0.95510 1.02889 0.94954 1.70089 1.40167 1.37975 1.11287 0.85686 0.77843 0.79025 0.80260 1.18720 1.21783 1.16475 1.20025 0.96357 0.91294 1.13891 1.24017 0.87981 0.93834 0.67970 1.90450 1.68011 1.41497 1.37862 1.20458 0.92434 0.96864 0.99066 0.91191 0.86300 0.91794 0.81316 0.82406 0.90883 0.89122 0.91626 0.92848 0.95211 0.92705 0.86289 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.85 10.49 -93.37 -0.98 -8.83 16 3 C 0.06 1.70 6.67 22.44 0.15 1.85 16 4 C -0.12 -2.64 9.02 22.41 0.20 -2.44 16 5 C -0.19 -5.07 8.22 22.32 0.18 -4.89 16 6 C 0.15 5.10 6.62 22.90 0.15 5.25 16 7 O -0.31 -11.51 8.73 -89.93 -0.78 -12.30 16 8 C 0.09 3.19 2.17 30.59 0.07 3.26 16 9 H 0.07 2.36 6.32 -2.39 -0.02 2.35 16 10 C -0.17 -4.19 9.17 71.98 0.66 -3.53 16 11 C -0.01 -0.52 3.75 29.85 0.11 -0.41 16 12 C -0.52 -28.77 9.43 25.60 0.24 -28.52 16 13 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 14 C 0.00 0.15 5.47 84.65 0.46 0.62 16 15 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 16 Si 0.95 42.43 27.46 68.60 1.88 44.32 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.24 -9.81 6.55 99.48 0.65 -9.16 16 20 C -0.21 -7.26 5.88 -20.08 -0.12 -7.38 16 21 C 0.40 14.24 11.19 70.06 0.78 15.02 16 22 O -0.50 -19.78 17.16 -3.08 -0.05 -19.83 16 23 C -0.07 -2.16 9.53 22.68 0.22 -1.95 16 24 H 0.07 0.69 7.65 -2.39 -0.02 0.68 16 25 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.17 2.49 6.27 -2.91 -0.02 2.47 16 28 H 0.16 3.59 5.41 -2.91 -0.02 3.58 16 29 H 0.07 1.51 6.89 -2.39 -0.02 1.50 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 33 H 0.03 1.27 7.21 -2.39 -0.02 1.25 16 34 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 35 H 0.12 4.08 7.63 -2.91 -0.02 4.05 16 36 H 0.14 4.31 7.65 -2.91 -0.02 4.28 16 Total: -1.00 -71.49 306.46 5.62 -65.87 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.03 Total: 11.78 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.22 Total: -21.80 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.30 Total: -59.21 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.82 Total: -40.96 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Total: -71.49 5.62 -65.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709957224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.849 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds