Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38476 * 120.10522 * 2 1 4 4 O 1.35915 * 119.98499 * 359.97438 * 3 2 1 5 5 C 1.42901 * 117.00094 * 186.04404 * 4 3 2 6 6 H 1.09003 * 109.46988 * 30.66330 * 5 4 3 7 7 C 1.52994 * 109.47138 * 270.66294 * 5 4 3 8 8 C 1.53002 * 109.47137 * 150.66139 * 5 4 3 9 9 C 1.50701 * 109.47014 * 295.00111 * 8 5 4 10 10 H 1.07998 * 120.00137 * 0.02562 * 9 8 5 11 11 C 1.37876 * 119.99747 * 179.97438 * 9 8 5 12 12 N 1.31514 * 119.99845 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99954 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47018 * 89.99948 * 13 11 9 15 15 H 1.48501 * 109.46841 * 209.99737 * 13 11 9 16 16 H 1.48496 * 109.47107 * 329.99729 * 13 11 9 17 17 C 1.38823 * 120.03281 * 179.72540 * 3 2 1 18 18 C 1.38290 * 120.24918 * 0.51235 * 17 3 2 19 19 C 1.37953 * 120.21137 * 359.48590 * 18 17 3 20 20 C 1.39541 * 120.10377 * 179.97438 * 2 1 3 21 21 C 1.47735 * 120.12223 * 359.97438 * 20 2 1 22 22 O 1.21464 * 120.00181 * 353.90311 * 21 20 2 23 23 O 1.34715 * 120.00078 * 173.90375 * 21 20 2 24 24 H 1.08992 * 109.47065 * 263.11312 * 1 2 3 25 25 H 1.09004 * 109.46957 * 23.11121 * 1 2 3 26 26 H 1.08998 * 109.47117 * 143.10980 * 1 2 3 27 27 H 1.09004 * 109.47344 * 180.02562 * 7 5 4 28 28 H 1.08995 * 109.47463 * 299.99890 * 7 5 4 29 29 H 1.09007 * 109.47106 * 60.00094 * 7 5 4 30 30 H 1.08999 * 109.46905 * 54.99858 * 8 5 4 31 31 H 1.09000 * 109.46701 * 174.99946 * 8 5 4 32 32 H 0.97000 * 119.99519 * 179.97438 * 12 11 9 33 33 H 1.08004 * 119.87138 * 180.27703 * 17 3 2 34 34 H 1.07997 * 119.89594 * 179.76862 * 18 17 3 35 35 H 1.08004 * 120.01685 * 180.27387 * 19 18 17 36 36 H 0.96700 * 117.00288 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3761 -0.0005 5 6 2.2980 3.5698 -0.1346 6 1 3.1859 3.3619 -0.7317 7 6 2.7192 4.0627 1.2512 8 6 1.4592 4.6467 -0.8257 9 6 1.1476 4.2132 -2.2350 10 1 1.5111 3.2643 -2.6010 11 6 0.3976 5.0275 -3.0568 12 7 0.1261 4.6494 -4.2868 13 14 -0.2317 6.6684 -2.4235 14 1 0.7717 7.7260 -2.7066 15 1 -1.5093 7.0038 -3.1022 16 1 -0.4578 6.5798 -0.9586 17 6 3.5898 1.1962 0.0058 18 6 4.2850 0.0008 0.0008 19 6 3.6034 -1.1986 0.0009 20 6 2.2069 -1.2072 0.0005 21 6 1.4733 -2.4895 0.0017 22 8 0.2639 -2.4972 0.1139 23 8 2.1457 -3.6503 -0.1217 24 1 -0.3633 -0.1232 1.0202 25 1 -0.3633 0.9452 -0.4034 26 1 -0.3633 -0.8219 -0.6169 27 1 3.3093 4.9735 1.1490 28 1 1.8315 4.2706 1.8483 29 1 3.3169 3.2955 1.7436 30 1 0.5291 4.7912 -0.2760 31 1 2.0171 5.5828 -0.8484 32 1 -0.4019 5.2222 -4.8648 33 1 4.1289 2.1321 0.0103 34 1 5.3650 0.0061 0.0016 35 1 4.1495 -2.1304 0.0015 36 1 1.6225 -4.4635 -0.1160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710003993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = -109.696334 kcal Electronic energy + Delta-G solvation = -19851.107925 eV Core-core repulsion = 16686.551751 eV Total energy + Delta-G solvation = -3164.556175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62791 -39.55492 -37.27092 -36.15861 -33.62804 -32.51942 -31.63652 -30.10741 -28.07718 -26.80291 -24.41406 -23.23195 -21.81438 -21.24104 -19.76855 -18.32958 -17.56418 -16.78992 -16.19633 -15.76007 -15.54722 -15.39537 -14.68210 -14.26248 -13.98832 -13.26619 -13.08217 -12.90751 -12.86515 -12.41616 -12.09886 -12.05839 -11.90874 -11.79427 -11.53852 -11.50995 -11.26445 -10.88256 -10.69356 -10.38376 -10.00806 -9.76777 -9.64189 -9.26057 -8.83007 -8.57195 -7.80476 -6.05816 -4.04393 0.77801 1.57237 2.62178 2.92472 3.27519 3.36373 3.38576 3.81223 3.91056 4.42107 4.86863 4.97813 5.10744 5.21464 5.28010 5.36030 5.48312 5.56768 5.64905 5.82367 5.86994 6.01847 6.06186 6.14455 6.27825 6.36798 6.41830 6.42880 6.54718 6.63444 6.68377 6.86443 7.02156 7.15077 7.69031 7.89535 7.97424 8.48656 8.98456 9.54545 11.07604 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024382 B = 0.005215 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.107927 B = 5367.833513 C = 5898.829046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C 0.139 3.861 4 O -0.283 6.283 5 C 0.092 3.908 6 H 0.070 0.930 7 C -0.178 4.178 8 C -0.012 4.012 9 C -0.517 4.517 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.176 4.176 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.103 4.103 21 C 0.527 3.473 22 O -0.505 6.505 23 O -0.514 6.514 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -10.779 10.878 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C 0.092 3.908 4 O -0.196 6.196 5 C 0.037 3.963 6 H 0.088 0.912 7 C -0.236 4.236 8 C -0.049 4.049 9 C -0.554 4.554 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.195 4.195 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.104 4.104 21 C 0.373 3.627 22 O -0.394 6.394 23 O -0.326 6.326 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.134 -10.300 10.756 16.512 hybrid contribution -0.397 0.441 0.102 0.602 sum 6.737 -9.858 10.858 16.139 Atomic orbital electron populations 1.20931 0.89271 1.04186 1.02706 1.19306 0.97321 0.88905 0.99780 1.18731 0.90185 0.86960 0.94945 1.86256 1.35904 1.11648 1.85758 1.22643 0.95242 0.83558 0.94868 0.91220 1.22411 1.01857 1.01333 0.97955 1.19748 0.95741 0.92474 0.96937 1.20983 1.33669 1.06194 0.94594 0.90942 1.24991 0.95592 0.98019 0.94703 1.69911 1.39325 1.37801 1.06838 0.86829 0.78671 0.84438 0.79656 1.20284 1.21254 1.18960 1.21636 0.93448 0.99792 1.04579 1.20838 0.99887 0.91473 0.99802 1.21158 0.92410 0.98722 1.00606 1.18532 0.93378 0.89053 1.09456 1.20877 0.85344 0.84145 0.72370 1.90862 1.15240 1.87560 1.45766 1.84566 1.45406 1.17073 1.85572 0.91215 0.90365 0.89623 0.91253 0.91809 0.92989 0.95267 0.94924 0.92693 0.84549 0.85332 0.84904 0.73093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.56 36.01 0.31 -1.71 16 2 C -0.05 -0.91 5.93 -104.05 -0.62 -1.52 16 3 C 0.14 2.50 6.61 -39.28 -0.26 2.24 16 4 O -0.28 -5.76 8.47 -19.47 -0.16 -5.92 16 5 C 0.09 1.77 2.15 -26.73 -0.06 1.72 16 6 H 0.07 1.30 6.06 -51.93 -0.31 0.99 16 7 C -0.18 -2.68 9.28 37.15 0.34 -2.34 16 8 C -0.01 -0.27 3.75 -27.88 -0.10 -0.38 16 9 C -0.52 -14.51 9.43 -34.44 -0.32 -14.83 16 10 H 0.07 2.23 7.99 -52.49 -0.42 1.82 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 13 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 17 C -0.18 -2.66 8.45 -39.35 -0.33 -3.00 16 18 C -0.10 -1.30 10.02 -39.67 -0.40 -1.70 16 19 C -0.11 -1.43 9.61 -39.16 -0.38 -1.81 16 20 C -0.10 -1.56 5.87 -105.00 -0.62 -2.18 16 21 C 0.53 7.36 8.20 34.61 0.28 7.65 16 22 O -0.50 -8.14 14.13 -19.24 -0.27 -8.41 16 23 O -0.51 -5.18 12.70 -40.53 -0.51 -5.69 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.51 7.33 -51.93 -0.38 1.13 16 26 H 0.09 1.52 5.88 -51.93 -0.31 1.21 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.69 7.35 -51.92 -0.38 0.31 16 30 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 31 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.14 1.89 5.56 -52.48 -0.29 1.60 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.40 7.62 -52.48 -0.40 1.00 16 36 H 0.41 2.16 9.11 45.56 0.42 2.58 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -32.94 303.29 -6.23 -39.16 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.70 Total: 2.55 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.25 Total: -15.98 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.95 Total: -20.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.94 -6.23 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.535 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds