Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38476 * 120.10522 * 2 1 4 4 O 1.35915 * 119.98499 * 359.97438 * 3 2 1 5 5 C 1.42901 * 117.00094 * 186.04404 * 4 3 2 6 6 H 1.09003 * 109.46988 * 30.66330 * 5 4 3 7 7 C 1.52994 * 109.47138 * 270.66294 * 5 4 3 8 8 C 1.53002 * 109.47137 * 150.66139 * 5 4 3 9 9 C 1.50701 * 109.47014 * 295.00111 * 8 5 4 10 10 H 1.07998 * 120.00137 * 0.02562 * 9 8 5 11 11 C 1.37876 * 119.99747 * 179.97438 * 9 8 5 12 12 N 1.31514 * 119.99845 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99954 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47018 * 89.99948 * 13 11 9 15 15 H 1.48501 * 109.46841 * 209.99737 * 13 11 9 16 16 H 1.48496 * 109.47107 * 329.99729 * 13 11 9 17 17 C 1.38823 * 120.03281 * 179.72540 * 3 2 1 18 18 C 1.38290 * 120.24918 * 0.51235 * 17 3 2 19 19 C 1.37953 * 120.21137 * 359.48590 * 18 17 3 20 20 C 1.39541 * 120.10377 * 179.97438 * 2 1 3 21 21 C 1.47735 * 120.12223 * 359.97438 * 20 2 1 22 22 O 1.21464 * 120.00181 * 353.90311 * 21 20 2 23 23 O 1.34715 * 120.00078 * 173.90375 * 21 20 2 24 24 H 1.08992 * 109.47065 * 263.11312 * 1 2 3 25 25 H 1.09004 * 109.46957 * 23.11121 * 1 2 3 26 26 H 1.08998 * 109.47117 * 143.10980 * 1 2 3 27 27 H 1.09004 * 109.47344 * 180.02562 * 7 5 4 28 28 H 1.08995 * 109.47463 * 299.99890 * 7 5 4 29 29 H 1.09007 * 109.47106 * 60.00094 * 7 5 4 30 30 H 1.08999 * 109.46905 * 54.99858 * 8 5 4 31 31 H 1.09000 * 109.46701 * 174.99946 * 8 5 4 32 32 H 0.97000 * 119.99519 * 179.97438 * 12 11 9 33 33 H 1.08004 * 119.87138 * 180.27703 * 17 3 2 34 34 H 1.07997 * 119.89594 * 179.76862 * 18 17 3 35 35 H 1.08004 * 120.01685 * 180.27387 * 19 18 17 36 36 H 0.96700 * 117.00288 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3761 -0.0005 5 6 2.2980 3.5698 -0.1346 6 1 3.1859 3.3619 -0.7317 7 6 2.7192 4.0627 1.2512 8 6 1.4592 4.6467 -0.8257 9 6 1.1476 4.2132 -2.2350 10 1 1.5111 3.2643 -2.6010 11 6 0.3976 5.0275 -3.0568 12 7 0.1261 4.6494 -4.2868 13 14 -0.2317 6.6684 -2.4235 14 1 0.7717 7.7260 -2.7066 15 1 -1.5093 7.0038 -3.1022 16 1 -0.4578 6.5798 -0.9586 17 6 3.5898 1.1962 0.0058 18 6 4.2850 0.0008 0.0008 19 6 3.6034 -1.1986 0.0009 20 6 2.2069 -1.2072 0.0005 21 6 1.4733 -2.4895 0.0017 22 8 0.2639 -2.4972 0.1139 23 8 2.1457 -3.6503 -0.1217 24 1 -0.3633 -0.1232 1.0202 25 1 -0.3633 0.9452 -0.4034 26 1 -0.3633 -0.8219 -0.6169 27 1 3.3093 4.9735 1.1490 28 1 1.8315 4.2706 1.8483 29 1 3.3169 3.2955 1.7436 30 1 0.5291 4.7912 -0.2760 31 1 2.0171 5.5828 -0.8484 32 1 -0.4019 5.2222 -4.8648 33 1 4.1289 2.1321 0.0103 34 1 5.3650 0.0061 0.0016 35 1 4.1495 -2.1304 0.0015 36 1 1.6225 -4.4635 -0.1160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710003993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = -131.701366 kcal Electronic energy + Delta-G solvation = -19852.062135 eV Core-core repulsion = 16686.551751 eV Total energy + Delta-G solvation = -3165.510385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.77768 -40.76613 -38.52494 -37.15986 -35.43016 -34.02882 -33.22154 -31.33343 -29.82356 -28.06906 -25.59358 -24.93278 -23.19880 -22.46677 -21.14369 -19.51052 -18.93992 -18.65106 -17.39652 -16.94703 -16.85367 -16.54736 -16.23432 -15.94117 -15.12797 -14.85028 -14.39674 -14.36998 -14.10656 -13.96626 -13.61583 -13.57629 -13.36974 -13.09162 -12.86470 -12.56323 -12.50642 -12.48786 -12.16054 -12.00567 -11.67306 -11.31323 -11.24399 -11.16882 -10.77002 -9.99141 -9.07053 -8.28003 -6.31953 -0.37229 0.41183 1.35237 1.39030 1.50002 1.51443 1.90244 2.36399 2.54338 2.73867 3.08573 3.74796 3.86657 3.97723 4.02345 4.11596 4.19079 4.34584 4.42995 4.57453 4.73232 4.74327 4.77360 4.83718 4.96661 5.07246 5.17289 5.23634 5.25746 5.32272 5.38369 5.43030 5.61799 5.62545 5.76716 6.24643 6.60740 6.74797 6.98294 7.30836 8.89309 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024382 B = 0.005215 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.107927 B = 5367.833513 C = 5898.829046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.084 4.084 3 C 0.106 3.894 4 O -0.316 6.316 5 C 0.091 3.909 6 H 0.069 0.931 7 C -0.166 4.166 8 C -0.012 4.012 9 C -0.521 4.521 10 H 0.024 0.976 11 C 0.002 3.998 12 N -0.953 5.953 13 Si 0.951 3.049 14 H -0.259 1.259 15 H -0.288 1.288 16 H -0.246 1.246 17 C -0.178 4.178 18 C -0.091 4.091 19 C -0.095 4.095 20 C -0.114 4.114 21 C 0.533 3.467 22 O -0.535 6.535 23 O -0.498 6.498 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.265 0.735 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 -10.817 12.732 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C 0.060 3.940 4 O -0.229 6.229 5 C 0.036 3.964 6 H 0.087 0.913 7 C -0.224 4.224 8 C -0.050 4.050 9 C -0.559 4.559 10 H 0.042 0.958 11 C -0.194 4.194 12 N -0.594 5.594 13 Si 0.774 3.226 14 H -0.183 1.183 15 H -0.214 1.214 16 H -0.170 1.170 17 C -0.196 4.196 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.115 4.115 21 C 0.379 3.621 22 O -0.427 6.427 23 O -0.312 6.312 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 9.457 -10.378 12.631 18.886 hybrid contribution -1.013 0.228 -0.529 1.165 sum 8.444 -10.150 12.102 17.910 Atomic orbital electron populations 1.20748 0.90532 1.02025 1.02655 1.19418 0.96944 0.90126 1.02031 1.19014 0.91631 0.86161 0.97206 1.86176 1.37348 1.12692 1.86730 1.22573 0.94061 0.82655 0.97132 0.91332 1.22311 1.02292 1.02707 0.95042 1.19726 0.96559 0.94761 0.93917 1.21277 1.33051 1.04254 0.97297 0.95754 1.26031 0.95927 1.02727 0.94753 1.70087 1.40864 1.39840 1.08649 0.85648 0.78069 0.79008 0.79851 1.18347 1.21447 1.16954 1.21888 0.92232 1.01561 1.03937 1.21333 1.01886 0.90217 0.97464 1.21590 0.91370 1.00328 0.98056 1.18754 0.94629 0.88817 1.09331 1.20712 0.84809 0.84833 0.71742 1.90853 1.16502 1.88089 1.47238 1.84493 1.45081 1.17031 1.84593 0.90721 0.93465 0.90221 0.89081 0.92037 0.91019 0.95814 0.92888 0.92619 0.83361 0.81102 0.81561 0.70402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.91 8.56 71.24 0.61 -3.30 16 2 C -0.08 -3.02 5.93 -19.49 -0.12 -3.14 16 3 C 0.11 3.89 6.61 22.47 0.15 4.04 16 4 O -0.32 -13.32 8.47 -92.60 -0.78 -14.10 16 5 C 0.09 3.48 2.15 30.59 0.07 3.55 16 6 H 0.07 2.56 6.06 -2.39 -0.01 2.55 16 7 C -0.17 -4.63 9.28 71.98 0.67 -3.97 16 8 C -0.01 -0.57 3.75 29.85 0.11 -0.46 16 9 C -0.52 -30.36 9.43 25.60 0.24 -30.12 16 10 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 11 C 0.00 0.11 5.47 84.65 0.46 0.57 16 12 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 13 Si 0.95 44.19 27.47 68.60 1.88 46.08 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 17 C -0.18 -5.11 8.45 22.42 0.19 -4.92 16 18 C -0.09 -2.01 10.02 22.21 0.22 -1.79 16 19 C -0.10 -2.16 9.61 22.54 0.22 -1.94 16 20 C -0.11 -3.35 5.87 -20.11 -0.12 -3.47 16 21 C 0.53 14.29 8.20 70.33 0.58 14.86 16 22 O -0.53 -17.34 14.13 19.95 0.28 -17.05 16 23 O -0.50 -8.61 12.70 -56.24 -0.71 -9.32 16 24 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.05 2.00 7.33 -2.38 -0.02 1.99 16 26 H 0.08 3.03 5.88 -2.39 -0.01 3.02 16 27 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.71 7.35 -2.38 -0.02 1.69 16 30 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 31 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.15 3.81 5.56 -2.91 -0.02 3.79 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.17 2.66 7.62 -2.91 -0.02 2.64 16 36 H 0.43 3.31 9.11 -74.06 -0.67 2.64 16 Total: -1.00 -76.05 303.29 4.63 -71.42 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.38 Total: 13.82 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.28 Total: -30.08 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.30 Total: -60.76 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.22 Total: -40.48 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -76.05 4.63 -71.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.279 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds