Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38490 * 120.10695 * 2 1 4 4 O 1.35906 * 119.98003 * 359.97438 * 3 2 1 5 5 C 1.42902 * 117.00320 * 174.87740 * 4 3 2 6 6 H 1.09000 * 109.46773 * 322.60295 * 5 4 3 7 7 C 1.53000 * 109.46914 * 82.59863 * 5 4 3 8 8 C 1.52999 * 109.47489 * 202.60247 * 5 4 3 9 9 C 1.50693 * 109.47120 * 64.99789 * 8 5 4 10 10 H 1.08000 * 120.00496 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00118 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99580 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00295 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47086 * 59.99778 * 13 11 9 15 15 H 1.48497 * 109.47331 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47294 * 300.00369 * 13 11 9 17 17 C 1.38813 * 120.03609 * 180.24616 * 3 2 1 18 18 C 1.38301 * 120.24848 * 359.45474 * 17 3 2 19 19 C 1.37951 * 120.21059 * 0.54791 * 18 17 3 20 20 C 1.39537 * 120.10708 * 179.97438 * 2 1 3 21 21 C 1.47739 * 120.12583 * 0.04199 * 20 2 1 22 22 O 1.21475 * 119.99575 * 5.85807 * 21 20 2 23 23 O 1.34709 * 120.00503 * 185.85312 * 21 20 2 24 24 H 1.09003 * 109.47018 * 96.85521 * 1 2 3 25 25 H 1.09000 * 109.46865 * 216.85159 * 1 2 3 26 26 H 1.08999 * 109.46922 * 336.85267 * 1 2 3 27 27 H 1.08998 * 109.47333 * 300.00338 * 7 5 4 28 28 H 1.09000 * 109.47047 * 60.00601 * 7 5 4 29 29 H 1.08995 * 109.46820 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46918 * 305.00028 * 8 5 4 31 31 H 1.08994 * 109.46968 * 185.00197 * 8 5 4 32 32 H 0.96997 * 119.99740 * 179.97438 * 12 11 9 33 33 H 1.08002 * 119.87363 * 179.70009 * 17 3 2 34 34 H 1.07996 * 119.89253 * 180.26946 * 18 17 3 35 35 H 1.08003 * 120.01709 * 179.74647 * 19 18 17 36 36 H 0.96695 * 117.00101 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1981 0.0000 4 8 1.5239 2.3761 -0.0005 5 6 2.2995 3.5709 0.1132 6 1 3.1309 3.4006 0.7972 7 6 2.8430 3.9591 -1.2634 8 6 1.4196 4.7009 0.6514 9 6 0.9843 4.3730 2.0563 10 1 1.3036 3.4510 2.5193 11 6 0.1791 5.2505 2.7511 12 7 -0.2093 6.3735 2.1875 13 14 -0.3599 4.8444 4.4929 14 1 0.8369 4.6931 5.3589 15 1 -1.2140 5.9411 5.0152 16 1 -1.1316 3.5756 4.4892 17 6 3.5898 1.1964 -0.0052 18 6 4.2850 0.0008 0.0010 19 6 3.6034 -1.1985 0.0010 20 6 2.2069 -1.2071 0.0005 21 6 1.4734 -2.4896 0.0002 22 8 0.2635 -2.4972 -0.1080 23 8 2.1463 -3.6505 0.1197 24 1 -0.3633 -0.1227 -1.0204 25 1 -0.3633 -0.8223 0.6163 26 1 -0.3633 0.9449 0.4040 27 1 3.4698 3.1540 -1.6468 28 1 2.0116 4.1294 -1.9474 29 1 3.4349 4.8701 -1.1765 30 1 0.5414 4.8118 0.0154 31 1 1.9858 5.6323 0.6544 32 1 -0.7760 6.9906 2.6762 33 1 4.1289 2.1322 -0.0101 34 1 5.3650 0.0062 0.0014 35 1 4.1495 -2.1303 0.0017 36 1 1.6231 -4.4637 0.1138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710003997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -114.351809 kcal Electronic energy + Delta-G solvation = -19825.352151 eV Core-core repulsion = 16660.594100 eV Total energy + Delta-G solvation = -3164.758051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65028 -39.55611 -37.24122 -36.19150 -33.60754 -32.56317 -31.46410 -30.11537 -27.55990 -26.79204 -24.38204 -23.41847 -21.95058 -21.22372 -19.82367 -18.30215 -17.55259 -16.44070 -16.17536 -15.78504 -15.54126 -15.39335 -14.61989 -14.45400 -13.98831 -13.27675 -13.13098 -12.95209 -12.72067 -12.15967 -12.04853 -11.94186 -11.81386 -11.54692 -11.53536 -11.35605 -11.21434 -10.83096 -10.74021 -10.47322 -10.12606 -9.99104 -9.43998 -9.16578 -8.84761 -8.40593 -7.80358 -6.03853 -4.05517 0.75094 1.55117 2.59302 2.90076 3.33490 3.37638 3.41341 3.83995 3.90992 4.44604 4.84812 4.95836 5.10153 5.19385 5.33301 5.39322 5.57896 5.64095 5.70657 5.84189 5.90515 6.01150 6.11130 6.15048 6.29166 6.36446 6.43957 6.54399 6.61718 6.66036 6.69699 6.90044 7.44217 7.54370 7.86287 7.92227 8.04202 8.32701 8.97746 9.58145 11.07456 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005463 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.799633 B = 5124.028713 C = 5844.304986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C 0.137 3.863 4 O -0.283 6.283 5 C 0.086 3.914 6 H 0.062 0.938 7 C -0.180 4.180 8 C 0.027 3.973 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.177 4.177 18 C -0.102 4.102 19 C -0.112 4.112 20 C -0.103 4.103 21 C 0.527 3.473 22 O -0.505 6.505 23 O -0.514 6.514 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.262 0.738 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -14.623 -5.868 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.056 4.056 3 C 0.090 3.910 4 O -0.195 6.195 5 C 0.030 3.970 6 H 0.080 0.920 7 C -0.237 4.237 8 C -0.010 4.010 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.196 4.196 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.104 4.104 21 C 0.372 3.628 22 O -0.394 6.394 23 O -0.326 6.326 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.869 -14.032 -5.877 17.128 hybrid contribution -0.343 -0.583 0.978 1.189 sum 7.527 -14.615 -4.900 17.154 Atomic orbital electron populations 1.20938 0.89289 1.04055 1.02873 1.19319 0.97300 0.88931 1.00028 1.18801 0.90230 0.87217 0.94754 1.86313 1.35888 1.11564 1.85726 1.22928 0.95194 0.83942 0.94926 0.91956 1.22450 1.01437 1.01392 0.98437 1.19253 0.94934 0.90442 0.96365 1.21065 1.30834 1.04904 0.98587 0.92658 1.24964 0.96021 0.95009 0.98221 1.69935 1.35950 1.10109 1.37535 0.86653 0.78697 0.78027 0.84660 1.20271 1.21250 1.20118 1.21686 0.93492 0.99807 1.04591 1.20850 0.99874 0.91497 0.99807 1.21151 0.92404 0.98704 1.00794 1.18533 0.93374 0.89029 1.09511 1.20897 0.85357 0.84154 0.72364 1.90865 1.15230 1.87569 1.45783 1.84565 1.45393 1.17064 1.85602 0.91115 0.89702 0.90369 0.93247 0.91780 0.91259 0.95198 0.94283 0.92852 0.84478 0.85372 0.84949 0.73099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 8.57 36.00 0.31 -1.69 16 2 C -0.05 -0.94 5.93 -104.05 -0.62 -1.55 16 3 C 0.14 2.45 6.54 -39.28 -0.26 2.19 16 4 O -0.28 -5.83 8.49 -19.45 -0.17 -5.99 16 5 C 0.09 1.70 2.18 -26.73 -0.06 1.65 16 6 H 0.06 1.20 6.46 -51.93 -0.34 0.86 16 7 C -0.18 -2.90 9.11 37.16 0.34 -2.57 16 8 C 0.03 0.67 4.68 -27.89 -0.13 0.54 16 9 C -0.52 -14.34 8.88 -34.44 -0.31 -14.65 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C -0.18 -2.65 8.14 -39.35 -0.32 -2.97 16 18 C -0.10 -1.27 10.03 -39.66 -0.40 -1.67 16 19 C -0.11 -1.41 9.61 -39.16 -0.38 -1.79 16 20 C -0.10 -1.53 5.87 -105.00 -0.62 -2.14 16 21 C 0.53 7.17 8.21 34.61 0.28 7.45 16 22 O -0.50 -7.98 14.13 -19.25 -0.27 -8.25 16 23 O -0.51 -5.00 12.69 -40.52 -0.51 -5.52 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.46 5.87 -51.93 -0.30 1.15 16 26 H 0.08 1.48 7.33 -51.93 -0.38 1.10 16 27 H 0.05 0.69 6.64 -51.93 -0.34 0.35 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 33 H 0.14 1.91 5.31 -52.49 -0.28 1.63 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.35 7.62 -52.48 -0.40 0.95 16 36 H 0.41 2.04 9.11 45.56 0.42 2.45 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -31.87 305.83 -6.58 -38.45 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.71 Total: 1.28 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.25 Total: -15.62 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.95 Total: -19.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.87 -6.58 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.902 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds